Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0001930 | OGI:12003960 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:1422734-1425846 | ||||||||
| Gene Symbol | OsFbox637, Os_F0061 | ||||||||||
| DNA seq | ttacagaattgtgagtacaccatccatatcttctggaacaagcttctcatctgcctcctcgcgcccaaaacatccatccaaccgatatctcccttttcggtcgatgatcatttgctccaatattaacgcatttctgagaatgtattttgctagctccacctggcctgtgttgccacaaaatccaaatatgcacaccatcttgagatgatagtgaggctgatccacgatgtcatccaaatccaaagggcacctgttcaagctacaatacatctgcaagaaatttatgtcatcattaacaaggagcaaagctaacacgtaataattagggaaaagaagatcaaagattcatgatcgaggaagagaaggagaaggatagcctgtatatcttgtcaaaacaaatgcgggggatggaattctgagattttgttagaaaaaagaagcttttgctctgtttggatacgaatatattcaatcaaggaaacacatggctaatcggtttccaaacatattatcaccttgattcatactatttggtatcttgtacagtgcataaatatggtgatgtgatgatcagggtaaacagtgatatcgatatagcaaaagcttctacagatgtcccaaataattatgattaaaatttacaaagtccactgtcaaatggaaaaaaatgcagttgccaactaatgctgaacaatactactttcgccgggccgaacaatattactttgccaaagctatgttcgatggtctgatgatcgttaaaaaggatcaatagtctgcagcgaatgttccagtttctgggacttatgagttcatggatcatgcatagggcacattggacaagcaggtaattcctaattagattgacagtactggcttagcaggttattctgattgggtttccaaaccaatgaaataacattaaataggaaaaaagaggtaatcggtcaatgagaatacaaaaggcgaactgtaactggctagggaagaaggcaataaaagtagtgaagtacaaattgtgaattctagaatgaaattggggattcaactgttcatccattgagttggccctaagggctaatatgttgagaagagtacaacgcaaaaagacagaaataccccttaacacatacacactaatacatatattcttaacacaaatgatatagctacttacatccaaataaagatcctccaaaaatggagctgctacgaaaagataagccaactggagactgaatttctatcgaatgaacctctctcaaaagttatttccaaagttacacttcaattgagtgaacttgagaggcgattgtgtaaatccagacatctggagggtgaccaggccacacataggttcaaacaacaagatgtgaaacagaaaatcaaatagaattaaatgtatatagagagtacaagaataatcagacctgagttttgacattaacttcaacgtataacgtttcaacatgaggtaatacacttggaattccagttaatatattttggagggttttctcatcaaaaagtctgatggttgatgctttgatattggagcattcattgagcgttaccaatgccagggaaccgtcgtactcaaatgttgtgagattcggagcatgtaactccattctttgtaaatgacaaccctgaattgacaaacattgcagacggcataatggttccgacacatgtaaattatgcagctggttacatgattggatgcttaaccactctagaacatggcatttcgatattaactgctctaaatgttgcaacctaacattgtcaagagcaagcagtttaaggtttgcaaatccgcagaaatctagaggtggattcaaagtaacactgtcaagccgaagagcctcaaggtaagatccattatgtttgtcgaaaatatgacaaggaaagtcatagttgttttcatgtgatttccaatctggggagaagtcaagaatgataacccttgcctttgatgcaatagcaaacgcaacccagccattgacatggttagcatgctcatttgacaaaccaaacttaacagcaaacttatttaccattgttccacaatgtttttccagaatagcatcaacccttttaatgaacttgttagcacttgatattctacagttcagatcagagcttgttccttttctcttggcattatttccaaggactgttttaataccaaagtacagattaggatggaatgtccaagcctgtctccagtttgttgacacaacactcaaccgagcgacttcctttaatgttaattttgatattacccttagtacaatatcctgacaatgcattttgaacaagcatcagaatacagcctcctagtcctagcacaaaaggagttgagagtttcatgacttcatgtcatgatatgacatacctcgggaagagactgaaaattaagcagacatggtcttgtcctctgtaaattaagctgcccccgacttatcttctgaaaattatgttgtgttcttctcctcttactaatacgttgtccgcaaattatacaattccttttggctgttgtgctcttactcctgaaaccaacaatcagcatgctctgccagtatgcaatgatacttctttcagaagttttaagtagcacacagaattgacttcttgaaacTttttttttagcaaaataacacatatgtcagagggtattttgcattattattagtagtaacagtacacaaataaatgaatataagcatataatgtgatggaattctgccatgtaaggatgcctttctttagattctctatttatttattttttgcgggggcctttgtttagattccatatcgtattaaaatcacaagcaaataaagaaaaaggtgcatgagttgggagtcaccttccatggattttcgaggagacaagaacgttgtcctccattgttggacgtggaggcagtggatcagggacaagagaaaccctgaatccctccaccgcaggtccgcagcccaatccaatcagcagactcctgatcccagcaaggtagccatgaagggggatggaatgatttatgattctgagacagggagaggctatttagggctggagccgctcgatcgcgaggcgcagcatc
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| CDS seq | atggaggacaacgttcttgtctcctcgaaaatccatggaaggagtaagagcacaacagccaaaaggaattgtataatttgcggacaacgtattagtaagaggagaagaacacaacataattttcagaagataagtcgggggcagcttaatttacagaggacaagaccatgtctgcttaattttcagtctcttcccgaggatattgtactaagggtaatatcaaaattaacattaaaggaagtcgctcggttgagtgttgtgtcaacaaactggagacaggcttggacattccatcctaatctgtactttggtattaaaacagtccttggaaataatgccaagagaaaaggaacaagctctgatctgaactgtagaatatcaagtgctaacaagttcattaaaagggttgatgctattctggaaaaacattgtggaacaatggtaaataagtttgctgttaagtttggtttgtcaaatgagcatgctaaccatgtcaatggctgggttgcgtttgctattgcatcaaaggcaagggttatcattcttgacttctccccagattggaaatcacatgaaaacaactatgactttccttgtcatattttcgacaaacataatggatcttaccttgaggctcttcggcttgacagtgttactttgaatccacctctagatttctgcggatttgcaaaccttaaactgcttgctcttgacaatgttaggttgcaacatttagagcagttaatatcgaaatgccatgttctagagtggttaagcatccaatcatgtaaccagctgcataatttacatgtgtcggaaccattatgccgtctgcaatgtttgtcaattcagggttgtcatttacaaagaatggagttacatgctccgaatctcacaacatttgagtacgacggttccctggcattggtaacgctcaatgaatgctccaatatcaaagcatcaaccatcagactttttgatgagaaaaccctccaaaatatattaactggaattccaagtgtattacctcatgttgaaacgttatacgttgaagttaatgtcaaaactcagatgtattgtagcttgaacaggtgccctttggatttggatgacatcgtggatcagcctcactatcatctcaagatggtgtgcatatttggattttgtggcaacacaggccaggtggagctagcaaaatacattctcagaaatgcgttaatattggagcaaatgatcatcgaccgaaaagggagatatcggttggatggatgttttgggcgcgaggaggcagatgagaagcttgttccagaagatatggatggtgtactcacaattctgtaa
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| Protein seq | MEDNVLVSSKIHGRSKSTTAKRNCIICGQRISKRRRTQHNFQKISRGQLNLQRTRPCLLNFQSLPEDIVLRVISKLTLKEVARLSVVSTNWRQAWTFHPNLYFGIKTVLGNNAKRKGTSSDLNCRISSANKFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKSHENNYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFANLKLLALDNVRLQHLEQLISKCHVLEWLSIQSCNQLHNLHVSEPLCRLQCLSIQGCHLQRMELHAPNLTTFEYDGSLALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVETLYVEVNVKTQMYCSLNRCPLDLDDIVDQPHYHLKMVCIFGFCGNTGQVELAKYILRNALILEQMIIDRKGRYRLDGCFGREEADEKLVPEDMDGVLTIL |
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| Function | F-box/LRR-repeat protein At3g26922 [UniProtKB/Swiss-Prot:Q9LJF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0001930 | OsLiXu_12g0001930.01 | Chr12 | 1422734 | 1425846 | - | NAM | ||
| CDS seq | atggaggacaacgttcttgtctcctcgaaaatccatggaaggagtaagagcacaacagccaaaaggaattgtataatttgcggacaacgtattagtaagaggagaagaacacaacataattttcagaagataagtcgggggcagcttaatttacagaggacaagaccatgtctgcttaattttcagtctcttcccgaggatattgtactaagggtaatatcaaaattaacattaaaggaagtcgctcggttgagtgttgtgtcaacaaactggagacaggcttggacattccatcctaatctgtactttggtattaaaacagtccttggaaataatgccaagagaaaaggaacaagctctgatctgaactgtagaatatcaagtgctaacaagttcattaaaagggttgatgctattctggaaaaacattgtggaacaatggtaaataagtttgctgttaagtttggtttgtcaaatgagcatgctaaccatgtcaatggctgggttgcgtttgctattgcatcaaaggcaagggttatcattcttgacttctccccagattggaaatcacatgaaaacaactatgactttccttgtcatattttcgacaaacataatggatcttaccttgaggctcttcggcttgacagtgttactttgaatccacctctagatttctgcggatttgcaaaccttaaactgcttgctcttgacaatgttaggttgcaacatttagagcagttaatatcgaaatgccatgttctagagtggttaagcatccaatcatgtaaccagctgcataatttacatgtgtcggaaccattatgccgtctgcaatgtttgtcaattcagggttgtcatttacaaagaatggagttacatgctccgaatctcacaacatttgagtacgacggttccctggcattggtaacgctcaatgaatgctccaatatcaaagcatcaaccatcagactttttgatgagaaaaccctccaaaatatattaactggaattccaagtgtattacctcatgttgaaacgttatacgttgaagttaatgtcaaaactcagatgtattgtagcttgaacaggtgccctttggatttggatgacatcgtggatcagcctcactatcatctcaagatggtgtgcatatttggattttgtggcaacacaggccaggtggagctagcaaaatacattctcagaaatgcgttaatattggagcaaatgatcatcgaccgaaaagggagatatcggttggatggatgttttgggcgcgaggaggcagatgagaagcttgttccagaagatatggatggtgtactcacaattctgtaa
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| Protein seq | MEDNVLVSSKIHGRSKSTTAKRNCIICGQRISKRRRTQHNFQKISRGQLNLQRTRPCLLNFQSLPEDIVLRVISKLTLKEVARLSVVSTNWRQAWTFHPNLYFGIKTVLGNNAKRKGTSSDLNCRISSANKFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKSHENNYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFANLKLLALDNVRLQHLEQLISKCHVLEWLSIQSCNQLHNLHVSEPLCRLQCLSIQGCHLQRMELHAPNLTTFEYDGSLALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVETLYVEVNVKTQMYCSLNRCPLDLDDIVDQPHYHLKMVCIFGFCGNTGQVELAKYILRNALILEQMIIDRKGRYRLDGCFGREEADEKLVPEDMDGVLTIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.150071 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0127400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03390 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0127400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001800 | RBH | 0.0 | 0.0 | 0.282371 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002010 | RBH | 0.0 | 0.0 | 0.497569 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002020 | RBH | 0.000000 | 0.0 | 2.625421 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001820 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001950 | RBH | 1.364845 | 0.0 | 2.560427 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0024100 | RBH | 0.0856695 | 0.4903105 | 0.8877565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001940 | RBH | 0.0 | 0.0 | 0.212798 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0025200 | RBH | 0.171729 | 0.715059 | 1.919769 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001920 | RBH | 0.109224 | 0.0 | 0.094894 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001340 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001240 | RBH | 0.000000 | 0.0 | 0.777750 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001430 | RBH | 0.0 | 0.000000 | 1.023357 |
