Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0021800 | OGI:11074130 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:29154549-29157332 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagatcagctcgtgatcggctcagtcaagggcgtcctcgacacgctgctgggccgcatcagcaccgtgctcgctgacaaggcacggctgcttggccgcgtccgccgcgacatgcagttcatcaaggacgagatggagatgatggacgccttcctcctgctgctcctgaaacagcaggccagcaccctcgaccgccaccactacaacaagtgcgcgccatggatcaagcaggcggtggaactcgcccacgactgtcaggactgcgttgagcagtatgcgcagtgtgtcgcagccggccggccgccatccaagggcctcctcagccacttccagcgagtctcccgtcttgtccggaacctttccgtctgccaccggctggcctcgcggatccaagacatcaaggtccgactgagtgaggtgaacgaccggcggaaaacgtatgatatttgcccccgctttgacaccttaagtcaattgtgggaacaggatgacgatggtgaacatggagatgaaactgcttggagacgttcttttgctttcgctgaaccaccagccaacctgaagaagagcactgtaaacgagctgatcagatggctcatggaggatcaatctgcagggcccaggctcatacctattgtgggagtcggcgtggaagccggtaagatcattgctgaaagagtttaccaggactcctccgtcgccatcttatttgactgcaaggcctggatcactgtcaacggagctcaatctcacgttcagatattaaaagatatactatgtcaggttgttctccctctgaacaagttcaggagtgaaatggatggctggaacgaggaggagctggtggagaagattcggtgctatttgagaggtaaaatcttccttgttattcttcacgatgtccgtgacaaattgatctgggatcatataaagcttgctttcccagatgattgtcctgctggtagtgccattatagtcacaacagataatgatgataaagtggcccagactttctctccgtataaaaccttcaatccagatagctccggtcatgttctcaacttcttcctcagtagagctatatctctgcttaaacatgaaagggaaggttggctacggaaaattctaccatgcatgttgatctatcttgaacctcaaatctactttatgaagatgctccttcggtttctgtattataatgagagtggttcttcaagccaagtgtacgatgcactaggcaatagaggatcactgcatgattactggcctaagaagatggtagagttatgctactttgatatgcctaataagtatcggagttgcatgctgtatctatctattttcccacctggctacaaaatcaggaggaccagcttagtaagacgatggattgttgaaggcctcatcactgacggacaagaaatgaatgcactagaacaagctgataactgttttgattcccttgttggcaggctgcttctctgtccaagcgacattgatgcttcaggcaaggtcaagacctgcacggtacttgacttggttcatgatgtcattactgatctggtatccggaggatatgatactacttttgttgtcacggttttggcaccacgagaactggctcgccatctttcaatccgcttcagcacaaagttgcatatatctctgtctgaacctatcgatgatattcttacctttctcaagtccctgccatcgtcttctttgctgtgtctgctcaaagtgctagatttggatagctgcaaaggtttgaagaggcgccacctgaagaacatctgtggcatatattcgctcaagtatttgagcctgcgggatacagatgtcaccgaactgccgaaggaaatggagaagctgatccacttggaaacgctagacatcaggcagacgaatgtcagtgtcttccccaggaaatctttagtgctccctaggctcaagcatttgctctcaggccatactgtctgtccaagtgaagacatcgtcaggcaacaggaatcattctctgccgtccacattccccaccgaattgggaagatgagaaacatggagatactatcccatattgaagtttcacatggtggaaaggagttgactgctgttagccagctactgaagctgaggaaattaggtgtggtcttccatgatgctgataaggatggttctgattgtttgcttcatgtaatcggcacgttgcacaagtgcctacgctctctgtccgtccaaatcagatcatcttctgccgatgatggaagcaagggctttgacatgagcatgatggatgccacactcccaaggtttctcgagagcctgacaatctctggcatcagaagtggattgcctctgtggatagaacatctccacaaacttaccaaggttactctgcgtgatacctccctgacagagagtgctatccatgtcctgggcaagctcgtgggcttgcgctatctcaggctccgacacaggtcatacatcccaggcaacctcaccatctccggaagggaattcagaaacctccagtttcttttgatcgagaactcagacattgtcagcatcaggttcgatgagggagcagctcctaggctcgagaggttggtctggcgtttcaccataatggattctcttgtcgggatcgatcacctcctaagcttcagggagctccagcttcacggtgactgtgacacggagaagattggagtgattctgcatgacatcagtgcacaccccaatgaccccagtctgaagcacattccagcagcagggaactaa
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| CDS seq | atggcagatcagctcgtgatcggctcagtcaagggcgtcctcgacacgctgctgggccgcatcagcaccgtgctcgctgacaaggcacggctgcttggccgcgtccgccgcgacatgcagttcatcaaggacgagatggagatgatggacgccttcctcctgctgctcctgaaacagcaggccagcaccctcgaccgccaccactacaacaagtgcgcgccatggatcaagcaggcggtggaactcgcccacgactgtcaggactgcgttgagcagtatgcgcagtgtgtcgcagccggccggccgccatccaagggcctcctcagccacttccagcgagtctcccgtcttgtccggaacctttccgtctgccaccggctggcctcgcggatccaagacatcaaggtccgactgagtgaggtgaacgaccggcggaaaacgtatgatatttgcccccgctttgacaccttaagtcaattgtgggaacaggatgacgatggtgaacatggagatgaaactgcttggagacgttcttttgctttcgctgaaccaccagccaacctgaagaagagcactgtaaacgagctgatcagatggctcatggaggatcaatctgcagggcccaggctcatacctattgtgggagtcggcgtggaagccggtaagatcattgctgaaagagtttaccaggactcctccgtcgccatcttatttgactgcaaggcctggatcactgtcaacggagctcaatctcacgttcagatattaaaagatatactatgtcaggttgttctccctctgaacaagttcaggagtgaaatggatggctggaacgaggaggagctggtggagaagattcggtgctatttgagaggtaaaatcttccttgttattcttcacgatgtccgtgacaaattgatctgggatcatataaagcttgctttcccagatgattgtcctgctggtagtgccattatagtcacaacagataatgatgataaagtggcccagactttctctccgtataaaaccttcaatccagatagctccggtcatgttctcaacttcttcctcagtagagctatatctctgcttaaacatgaaagggaagtgctagatttggatagctgcaaaggtttgaagaggcgccacctgaagaacatctgtggcatatattcgctcaagtatttgagcctgcgggatacagatgtcaccgaactgccgaaggaaatggagaagctgatccacttggaaacgctagacatcaggcagacgaattgcctacgctctctgtccgtccaaatcagatcatcttctgccgatgatggaagcaagggctttgacatgagcatgatggatgccacactcccaaggtttctcgagagcctgacaatctctggcatcagaagtggattgcctctgtggatagaacatctccacaaacttaccaaggttactctgcgtgatacctccctgacagagagtgctatccatgtcctgggcaagctcgtgggcttgcgctatctcaggctccgacacaggtcatacatcccaggcaacctcaccatctccggaagggaattcagaaacctccagtttcttttgatcgagaactcagacattgtcagcatcaggttcgatgagggagcagctcctaggctcgagaggttggtctggcgtttcaccataatggattctcttgtcgggatcgatcacctcctaagcttcagggagctccagcttcacggtgactgtgacacggagaagattggagtgattctgcatgacatcagtgcacaccccaatgaccccagtctgaagcacattccagcagcagggaactaa
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| Protein seq | MADQLVIGSVKGVLDTLLGRISTVLADKARLLGRVRRDMQFIKDEMEMMDAFLLLLLKQQASTLDRHHYNKCAPWIKQAVELAHDCQDCVEQYAQCVAAGRPPSKGLLSHFQRVSRLVRNLSVCHRLASRIQDIKVRLSEVNDRRKTYDICPRFDTLSQLWEQDDDGEHGDETAWRRSFAFAEPPANLKKSTVNELIRWLMEDQSAGPRLIPIVGVGVEAGKIIAERVYQDSSVAILFDCKAWITVNGAQSHVQILKDILCQVVLPLNKFRSEMDGWNEEELVEKIRCYLRGKIFLVILHDVRDKLIWDHIKLAFPDDCPAGSAIIVTTDNDDKVAQTFSPYKTFNPDSSGHVLNFFLSRAISLLKHEREVLDLDSCKGLKRRHLKNICGIYSLKYLSLRDTDVTELPKEMEKLIHLETLDIRQTNCLRSLSVQIRSSSADDGSKGFDMSMMDATLPRFLESLTISGIRSGLPLWIEHLHKLTKVTLRDTSLTESAIHVLGKLVGLRYLRLRHRSYIPGNLTISGREFRNLQFLLIENSDIVSIRFDEGAAPRLERLVWRFTIMDSLVGIDHLLSFRELQLHGDCDTEKIGVILHDISAHPNDPSLKHIPAAGN |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0021800 | OsLiXu_11g0021800.01 | Chr11 | 29154549 | 29157332 | + | NAM | ||
| CDS seq | atggcagatcagctcgtgatcggctcagtcaagggcgtcctcgacacgctgctgggccgcatcagcaccgtgctcgctgacaaggcacggctgcttggccgcgtccgccgcgacatgcagttcatcaaggacgagatggagatgatggacgccttcctcctgctgctcctgaaacagcaggccagcaccctcgaccgccaccactacaacaagtgcgcgccatggatcaagcaggcggtggaactcgcccacgactgtcaggactgcgttgagcagtatgcgcagtgtgtcgcagccggccggccgccatccaagggcctcctcagccacttccagcgagtctcccgtcttgtccggaacctttccgtctgccaccggctggcctcgcggatccaagacatcaaggtccgactgagtgaggtgaacgaccggcggaaaacgtatgatatttgcccccgctttgacaccttaagtcaattgtgggaacaggatgacgatggtgaacatggagatgaaactgcttggagacgttcttttgctttcgctgaaccaccagccaacctgaagaagagcactgtaaacgagctgatcagatggctcatggaggatcaatctgcagggcccaggctcatacctattgtgggagtcggcgtggaagccggtaagatcattgctgaaagagtttaccaggactcctccgtcgccatcttatttgactgcaaggcctggatcactgtcaacggagctcaatctcacgttcagatattaaaagatatactatgtcaggttgttctccctctgaacaagttcaggagtgaaatggatggctggaacgaggaggagctggtggagaagattcggtgctatttgagaggtaaaatcttccttgttattcttcacgatgtccgtgacaaattgatctgggatcatataaagcttgctttcccagatgattgtcctgctggtagtgccattatagtcacaacagataatgatgataaagtggcccagactttctctccgtataaaaccttcaatccagatagctccggtcatgttctcaacttcttcctcagtagagctatatctctgcttaaacatgaaagggaagtgctagatttggatagctgcaaaggtttgaagaggcgccacctgaagaacatctgtggcatatattcgctcaagtatttgagcctgcgggatacagatgtcaccgaactgccgaaggaaatggagaagctgatccacttggaaacgctagacatcaggcagacgaattgcctacgctctctgtccgtccaaatcagatcatcttctgccgatgatggaagcaagggctttgacatgagcatgatggatgccacactcccaaggtttctcgagagcctgacaatctctggcatcagaagtggattgcctctgtggatagaacatctccacaaacttaccaaggttactctgcgtgatacctccctgacagagagtgctatccatgtcctgggcaagctcgtgggcttgcgctatctcaggctccgacacaggtcatacatcccaggcaacctcaccatctccggaagggaattcagaaacctccagtttcttttgatcgagaactcagacattgtcagcatcaggttcgatgagggagcagctcctaggctcgagaggttggtctggcgtttcaccataatggattctcttgtcgggatcgatcacctcctaagcttcagggagctccagcttcacggtgactgtgacacggagaagattggagtgattctgcatgacatcagtgcacaccccaatgaccccagtctgaagcacattccagcagcagggaactaa
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| Protein seq | MADQLVIGSVKGVLDTLLGRISTVLADKARLLGRVRRDMQFIKDEMEMMDAFLLLLLKQQASTLDRHHYNKCAPWIKQAVELAHDCQDCVEQYAQCVAAGRPPSKGLLSHFQRVSRLVRNLSVCHRLASRIQDIKVRLSEVNDRRKTYDICPRFDTLSQLWEQDDDGEHGDETAWRRSFAFAEPPANLKKSTVNELIRWLMEDQSAGPRLIPIVGVGVEAGKIIAERVYQDSSVAILFDCKAWITVNGAQSHVQILKDILCQVVLPLNKFRSEMDGWNEEELVEKIRCYLRGKIFLVILHDVRDKLIWDHIKLAFPDDCPAGSAIIVTTDNDDKVAQTFSPYKTFNPDSSGHVLNFFLSRAISLLKHEREVLDLDSCKGLKRRHLKNICGIYSLKYLSLRDTDVTELPKEMEKLIHLETLDIRQTNCLRSLSVQIRSSSADDGSKGFDMSMMDATLPRFLESLTISGIRSGLPLWIEHLHKLTKVTLRDTSLTESAIHVLGKLVGLRYLRLRHRSYIPGNLTISGREFRNLQFLLIENSDIVSIRFDEGAAPRLERLVWRFTIMDSLVGIDHLLSFRELQLHGDCDTEKIGVILHDISAHPNDPSLKHIPAAGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.141306 | 0.0 | 0.094193 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0654100 | RBH | 0.150427 | 0.077134 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43320 | RBH | 0.094236 | 0.048059 | 0.209171 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0654100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022350 | RBH | 0.000000 | 0.000000 | 0.282980 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022390 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022110 | RBH | 0.228264 | 0.0 | 1.313893 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021780 | SBH | 0.000000 | 0.053727 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022100 | SBH | 0.378057 | 4.880860 | 3.471084 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0389300 | RBH | 0.890511 | 4.566477 | 2.743759 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023070 | SBH | 0.000000 | 0.000000 | 0.052397 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0412800 | SBH | 2.745179 | 11.8742955 | 8.6976625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022560 | SBH | 0.026109 | 0.114884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022630 | RBH | 0.070251 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022290 | RBH | 0.543565 | 5.181969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021930 | SBH | 0.127916 | 1.502349 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022150 | RBH | 0.0 | 0.319478 | 0.286570 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022760 | SBH | 0.772342 | 7.133319 | 2.679777 |
