Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0021930 | OGI:11074160 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:28011383-28014151 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggagctcgtggtcagctcggccaagggcgccgtgaagtcgctgctgggccgcatcagcaccatgctcgtcaacgaggcacagctgcttggccgcgtccgccgcgacatgcagttcatcaaggacgagatggagatgatggacgccttcctcctgctcctcctgcaccagcaggccggcaccctcgaccaccactaccacagccaatgcacgccatggatcaggcaggcgatggagctcgcccgcgactgccaggactgcgtcgagcagtacgcgcagtgcatcgcagctgggccaccctccaagagcctcctcctcggcctcctccgccgggtgtcccggcttgtccgtagcttccccgaacgccacaggctggccgtgcagatccaagacatcaaggtccggctgggcgaggtgagccaccggcggaagacgtatgacatttgtgccaacctcaacagctaccgtccacctgagcaggataacggcggtgagcaggaagatgaagctgcttggaggcgttatttggcttctgctgaaccaccggctgacctgaagaacactgtgaacgagcttgtcaggtggctcatggaggatcaacctgcagggcttaggatcatacctgtggtcggaatctgcgtggatacaagtgcgattattgctgagagagtctaccagcactcctctgtcaccagcctgtttgactgcaaggcttggatcactgtccgtgattgtcaatctcctcttcagattctcaaggatatactatgtcaacttgttctccctctgaacaagttcaggagtgagatgattggctggaacgaggagcagctggtggagaagctgcgctgctatttgcgaggtaaaatcttcctcattgttcttcacgatgtccgtgatgaatcaatctggagtcatataaagcttgccttgccagatgattgttctgctggtagtgccatcataatcaccacagatgatgataaagtggccgagtctttctctgcgtataaaatcttcaacccagatagccccggctatgttctcaatttcttccttagtaaagctatagctctgcttaaacatgaaaatgaaaaacagctaaggaaaatcctaccgtgcatgctgatccatcttgaacctgaaaccttttttatgaagatgctccttcggtacctgtattatgggagatatcctatgtcacgactgcgtgatgcactacagcatacgtcatcgctgcatgattattggcctaagaagatggtgtacttatgctacaattatttgcctgataagtacaggagctgcatgctgtatctgtctattttcccacctggttgcagcatcaggaggaccagcttagtaagacgatggattgttgaagtcctcatcactgatgagcaagagaggagtgcactaaaacaagctgatcactgttttgatgccctcgttggcaggttgattctctgtccacgcgacattgatgcttcaggcaaggtcaggacctgcatagtacctgacttggttcacgatgctcttactgatctagtagccagaggaagcaacattacttctgtggacacagttttggcaccaccagagttggcccgtcatctttcaatccgcttcagcacgaagttgcacatgtctccatctgaaccaatcaatagtattctttcctttctcaagtccttgctttcatcatctcggcttggtctgcttaaagtgctagatttggatggctgcagaggtttgaagaggcaccacctcaagaacatctgtggcatctatttgctcaagtatttgagcctacgggacacagatgtcaccagacttcccagagaaatagagaatctgatccacttggaaacacttgacatccgacagacgaagatcaataccttccccaggaaatctttagtgctccctatgctcaagcatttgttctcaggctacactgtctgctcaagtgaagacatcatcaggcagcaggaatcattctctgccatccacattcctcaccgaattgggaggatgagaaatatggagatactgtcccacatcgaagtttcacatggtggaatggagttgattgatgttggccagctactgaaactgacgaagctaggtgtggtcatccatgacactgataaggatggttttgatcatttacttcatgtaatcagcaggttgcacaagtgcctacgctctctgtcaatccggatcagattatattctcccgatgatggaagcaggggctttgacatgagcatgatggatgccacactcccaaggcttctcgagagcctgacaatctctggcatcagaagtggattacctcactggattgaacatctccaccaacttaccaaggttactctgcatgatacctccctgacagagagtgctatccatgtccttggcaagcttgtgggcttgcgctatctcaggctccgacacaggtcagacatcccaggcaacctcaccatctccggaagggaattcaaaaatctccagcttctttcgatcgagaactcagacattgtcagcatcaggttcgatgagggagcagctcctaggctcgagaggttggtctggtgtttcaccgtaatggattctcttgtcgggatcgatcacctcctaagcttcagggagctccagcttcacggtgactgtgacacagagaagattggggtgattatgcatgacatcaatgcacaccccaatgaccccagtctaacgcacattccagcagcagggaactaa
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| CDS seq | atggcggagctcgtggtcagctcggccaagggcgccgtgaagtcgctgctgggccgcatcagcaccatgctcgtcaacgaggcacagctgcttggccgcgtccgccgcgacatgcagttcatcaaggacgagatggagatgatggacgccttcctcctgctcctcctgcaccagcaggccggcaccctcgaccaccactaccacagccaatgcacgccatggatcaggcaggcgatggagctcgcccgcgactgccaggactgcgtcgagcagtacgcgcagtgcatcgcagctgggccaccctccaagagcctcctcctcggcctcctccgccgggtgtcccggcttgtccgtagcttccccgaacgccacaggctggccgtgcagatccaagacatcaaggtccggctgggcgaggtgagccaccggcggaagacgtatgacatttgtgccaacctcaacagctaccgtccacctgagcaggataacggcggtgagcaggaagatgaagctgcttggaggcgttatttggcttctgctgaaccaccggctgacctgaagaacactgtgaacgagcttgtcaggtggctcatggaggatcaacctgcagggcttaggatcatacctgtggtcggaatctgcgtggatacaagtgcgattattgctgagagagtctaccagcactcctctgtcaccagcctgtttgactgcaaggcttggatcactgtccgtgattgtcaatctcctcttcagattctcaaggatatactatgtcaacttgttctccctctgaacaagttcaggagtgagatgattggctggaacgaggagcagctggtggagaagctgcgctgctatttgcgaggtaaaatcttcctcattgttcttcacgatgtccgtgatgaatcaatctggagtcatataaagcttgccttgccagatgattgttctgctggtagtgccatcataatcaccacagatgatgataaagtggccgagtctttctctgcgtataaaatcttcaacccagatagccccggctatgttctcaatttcttccttagtaaagctatagctctgcttaaacatgaaaatgaaaaacagctaaggaaaatcctaccgtgcatgctgatccatcttgaacctgaaaccttttttatgaagatgctccttcggtacctgtattatgggagatatcctatgtcacgactgcgtgatgcactacagcatacgtcatcgctgcatgattattggcctaagaagatggtgtacttatgctacaattatttgcctgataagtacaggagctgcatgctgtatctgtctattttcccacctggttgcagcatcaggaggaccagcttagtaagacgatggattgttgaagtcctcatcactgatgagcaagagaggagtgcactaaaacaagctgatcactgttttgatgccctcgttggcaggttgattctctgtccacgcgacattgatgcttcaggcaaggtcaggacctgcatagtacctgacttggttcacgatgctcttactgatctagtagccagaggaagcaacattacttctgtggacacagttttggcaccaccagagttggcccgtcatctttcaatccgcttcagcacgaagttgcacatgtctccatctgaaccaatcaatagtattctttcctttctcaagtccttgctttcatcatctcggcttggtctgcttaaagtgctagatttggatggctgcagaggtttgaagaggcaccacctcaagaacatctgtggcatctatttgctcaagtatttgagcctacgggacacagatgtcaccagacttcccagagaaatagagaatctgatccacttggaaacacttgacatccgacagacgaagatcaataccttccccaggaaatctttagtgctccctatgctcaagcatttgttctcaggctacactgtctgctcaagtgaagacatcatcaggcagcaggaatcattctctgccatccacattcctcaccgaattgggaggatgagaaatatggagatactgtcccacatcgaagtttcacatggtggaatggagttgattgatgttggccagctactgaaactgacgaagctaggtgtggtcatccatgacactgataaggatggttttgatcatttacttcatgtaatcagcaggttgcacaagtgcctacgctctctgtcaatccggatcagattatattctcccgatgatggaagcaggggctttgacatgagcatgatggatgccacactcccaaggcttctcgagagcctgacaatctctggcatcagaagtggattacctcactggattgaacatctccaccaacttaccaaggttactctgcatgatacctccctgacagagagtgctatccatgtccttggcaagcttgtgggcttgcgctatctcaggctccgacacaggtcagacatcccaggcaacctcaccatctccggaagggaattcaaaaatctccagcttctttcgatcgagaactcagacattgtcagcatcaggttcgatgagggagcagctcctaggctcgagaggttggtctggtgtttcaccgtaatggattctcttgtcgggatcgatcacctcctaagcttcagggagctccagcttcacggtgactgtgacacagagaagattggggtgattatgcatgacatcaatgcacaccccaatgaccccagtctaacgcacattccagcagcagggaactaa
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| Protein seq | MAELVVSSAKGAVKSLLGRISTMLVNEAQLLGRVRRDMQFIKDEMEMMDAFLLLLLHQQAGTLDHHYHSQCTPWIRQAMELARDCQDCVEQYAQCIAAGPPSKSLLLGLLRRVSRLVRSFPERHRLAVQIQDIKVRLGEVSHRRKTYDICANLNSYRPPEQDNGGEQEDEAAWRRYLASAEPPADLKNTVNELVRWLMEDQPAGLRIIPVVGICVDTSAIIAERVYQHSSVTSLFDCKAWITVRDCQSPLQILKDILCQLVLPLNKFRSEMIGWNEEQLVEKLRCYLRGKIFLIVLHDVRDESIWSHIKLALPDDCSAGSAIIITTDDDKVAESFSAYKIFNPDSPGYVLNFFLSKAIALLKHENEKQLRKILPCMLIHLEPETFFMKMLLRYLYYGRYPMSRLRDALQHTSSLHDYWPKKMVYLCYNYLPDKYRSCMLYLSIFPPGCSIRRTSLVRRWIVEVLITDEQERSALKQADHCFDALVGRLILCPRDIDASGKVRTCIVPDLVHDALTDLVARGSNITSVDTVLAPPELARHLSIRFSTKLHMSPSEPINSILSFLKSLLSSSRLGLLKVLDLDGCRGLKRHHLKNICGIYLLKYLSLRDTDVTRLPREIENLIHLETLDIRQTKINTFPRKSLVLPMLKHLFSGYTVCSSEDIIRQQESFSAIHIPHRIGRMRNMEILSHIEVSHGGMELIDVGQLLKLTKLGVVIHDTDKDGFDHLLHVISRLHKCLRSLSIRIRLYSPDDGSRGFDMSMMDATLPRLLESLTISGIRSGLPHWIEHLHQLTKVTLHDTSLTESAIHVLGKLVGLRYLRLRHRSDIPGNLTISGREFKNLQLLSIENSDIVSIRFDEGAAPRLERLVWCFTVMDSLVGIDHLLSFRELQLHGDCDTEKIGVIMHDINAHPNDPSLTHIPAAGN |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0021930 | OsLaMu_11g0021930.01 | Chr11 | 28011383 | 28014151 | + | NAM | ||
| CDS seq | atggcggagctcgtggtcagctcggccaagggcgccgtgaagtcgctgctgggccgcatcagcaccatgctcgtcaacgaggcacagctgcttggccgcgtccgccgcgacatgcagttcatcaaggacgagatggagatgatggacgccttcctcctgctcctcctgcaccagcaggccggcaccctcgaccaccactaccacagccaatgcacgccatggatcaggcaggcgatggagctcgcccgcgactgccaggactgcgtcgagcagtacgcgcagtgcatcgcagctgggccaccctccaagagcctcctcctcggcctcctccgccgggtgtcccggcttgtccgtagcttccccgaacgccacaggctggccgtgcagatccaagacatcaaggtccggctgggcgaggtgagccaccggcggaagacgtatgacatttgtgccaacctcaacagctaccgtccacctgagcaggataacggcggtgagcaggaagatgaagctgcttggaggcgttatttggcttctgctgaaccaccggctgacctgaagaacactgtgaacgagcttgtcaggtggctcatggaggatcaacctgcagggcttaggatcatacctgtggtcggaatctgcgtggatacaagtgcgattattgctgagagagtctaccagcactcctctgtcaccagcctgtttgactgcaaggcttggatcactgtccgtgattgtcaatctcctcttcagattctcaaggatatactatgtcaacttgttctccctctgaacaagttcaggagtgagatgattggctggaacgaggagcagctggtggagaagctgcgctgctatttgcgaggtaaaatcttcctcattgttcttcacgatgtccgtgatgaatcaatctggagtcatataaagcttgccttgccagatgattgttctgctggtagtgccatcataatcaccacagatgatgataaagtggccgagtctttctctgcgtataaaatcttcaacccagatagccccggctatgttctcaatttcttccttagtaaagctatagctctgcttaaacatgaaaatgaaaaacagctaaggaaaatcctaccgtgcatgctgatccatcttgaacctgaaaccttttttatgaagatgctccttcggtacctgtattatgggagatatcctatgtcacgactgcgtgatgcactacagcatacgtcatcgctgcatgattattggcctaagaagatggtgtacttatgctacaattatttgcctgataagtacaggagctgcatgctgtatctgtctattttcccacctggttgcagcatcaggaggaccagcttagtaagacgatggattgttgaagtcctcatcactgatgagcaagagaggagtgcactaaaacaagctgatcactgttttgatgccctcgttggcaggttgattctctgtccacgcgacattgatgcttcaggcaaggtcaggacctgcatagtacctgacttggttcacgatgctcttactgatctagtagccagaggaagcaacattacttctgtggacacagttttggcaccaccagagttggcccgtcatctttcaatccgcttcagcacgaagttgcacatgtctccatctgaaccaatcaatagtattctttcctttctcaagtccttgctttcatcatctcggcttggtctgcttaaagtgctagatttggatggctgcagaggtttgaagaggcaccacctcaagaacatctgtggcatctatttgctcaagtatttgagcctacgggacacagatgtcaccagacttcccagagaaatagagaatctgatccacttggaaacacttgacatccgacagacgaagatcaataccttccccaggaaatctttagtgctccctatgctcaagcatttgttctcaggctacactgtctgctcaagtgaagacatcatcaggcagcaggaatcattctctgccatccacattcctcaccgaattgggaggatgagaaatatggagatactgtcccacatcgaagtttcacatggtggaatggagttgattgatgttggccagctactgaaactgacgaagctaggtgtggtcatccatgacactgataaggatggttttgatcatttacttcatgtaatcagcaggttgcacaagtgcctacgctctctgtcaatccggatcagattatattctcccgatgatggaagcaggggctttgacatgagcatgatggatgccacactcccaaggcttctcgagagcctgacaatctctggcatcagaagtggattacctcactggattgaacatctccaccaacttaccaaggttactctgcatgatacctccctgacagagagtgctatccatgtccttggcaagcttgtgggcttgcgctatctcaggctccgacacaggtcagacatcccaggcaacctcaccatctccggaagggaattcaaaaatctccagcttctttcgatcgagaactcagacattgtcagcatcaggttcgatgagggagcagctcctaggctcgagaggttggtctggtgtttcaccgtaatggattctcttgtcgggatcgatcacctcctaagcttcagggagctccagcttcacggtgactgtgacacagagaagattggggtgattatgcatgacatcaatgcacaccccaatgaccccagtctaacgcacattccagcagcagggaactaa
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| Protein seq | MAELVVSSAKGAVKSLLGRISTMLVNEAQLLGRVRRDMQFIKDEMEMMDAFLLLLLHQQAGTLDHHYHSQCTPWIRQAMELARDCQDCVEQYAQCIAAGPPSKSLLLGLLRRVSRLVRSFPERHRLAVQIQDIKVRLGEVSHRRKTYDICANLNSYRPPEQDNGGEQEDEAAWRRYLASAEPPADLKNTVNELVRWLMEDQPAGLRIIPVVGICVDTSAIIAERVYQHSSVTSLFDCKAWITVRDCQSPLQILKDILCQLVLPLNKFRSEMIGWNEEQLVEKLRCYLRGKIFLIVLHDVRDESIWSHIKLALPDDCSAGSAIIITTDDDKVAESFSAYKIFNPDSPGYVLNFFLSKAIALLKHENEKQLRKILPCMLIHLEPETFFMKMLLRYLYYGRYPMSRLRDALQHTSSLHDYWPKKMVYLCYNYLPDKYRSCMLYLSIFPPGCSIRRTSLVRRWIVEVLITDEQERSALKQADHCFDALVGRLILCPRDIDASGKVRTCIVPDLVHDALTDLVARGSNITSVDTVLAPPELARHLSIRFSTKLHMSPSEPINSILSFLKSLLSSSRLGLLKVLDLDGCRGLKRHHLKNICGIYLLKYLSLRDTDVTRLPREIENLIHLETLDIRQTKINTFPRKSLVLPMLKHLFSGYTVCSSEDIIRQQESFSAIHIPHRIGRMRNMEILSHIEVSHGGMELIDVGQLLKLTKLGVVIHDTDKDGFDHLLHVISRLHKCLRSLSIRIRLYSPDDGSRGFDMSMMDATLPRLLESLTISGIRSGLPHWIEHLHQLTKVTLHDTSLTESAIHVLGKLVGLRYLRLRHRSDIPGNLTISGREFKNLQLLSIENSDIVSIRFDEGAAPRLERLVWCFTVMDSLVGIDHLLSFRELQLHGDCDTEKIGVIMHDINAHPNDPSLTHIPAAGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.127916 | 1.502349 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0655200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43410 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0655200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022440 | SBH | 0.0 | 1.864795 | 0.721100 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022500 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022180 | RBH | 0.0 | 0.0 | 0.717332 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021660 | RBH | 0.019316 | 0.010651 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022100 | RBH | 0.378057 | 4.880860 | 3.471084 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0389300 | RBH | 0.890511 | 4.566477 | 2.743759 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022950 | RBH | 0.000000 | 0.000000 | 0.289307 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0412800 | RBH | 2.745179 | 11.8742955 | 8.6976625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022560 | RBH | 0.026109 | 0.114884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022720 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022420 | RBH | 3.487519 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021900 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021950 | RBH | 0.0 | 0.950097 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022280 | RBH | 0.169676 | 0.641354 | 0.860469 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022760 | RBH | 0.772342 | 7.133319 | 2.679777 |
