Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0018730 | OGI:11066080 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:25788316-25795177 | ||||||||
| Gene Symbol | OsWD40-189 | ||||||||||
| DNA seq | ccctagttgaccatctcgcttcccccttccccgcctcctctcgagttcacctgccacccgcccgccgccgccgccgccgccgccgagcagctactggtgccggccgccgtcctcctgcttccgccgccggtgagcttccgcacgcacgcacgcacatcctcttcctcatctctctctctctctctctctctctctctctctgccttaacaaaatttggggttcaactgacggattcttcaactgactgatccccatcccgctccttgctagggatttcagatggagaaccgagatcagcaggagcccggcagcggcagcggcagcggaagcgtgatgtgccagctcgtcaatcccgagggagaccacctcggcgccgccctctacctgccgcagaacgtcggcccgccgcagcttcaggagatcgtcaaccatcttctccacaacgtatgcacgcttgcgttttttacactgctattgttaccatgccggccggagggctagctcccttggtttagcgacaattttaaaattcatattcatatcggatttggggaaccacttgtcacatcgatttatttgttgagaaaacattgtgaaaccacctaactagagtactaggcaacatcacaagctgtctggagttgtttcccttaattctgtgattttttttgcataattcattggcgggagatgaaattaatgcctttacaacaaggacaagtctacttttaagctttcacataaaaagaaaaaaaaatctgaatggatgtatcatgggaaatttatgttcagctatgtaatgtactacttgtgtgacctcattactttaaacatttactttaggaggacaagttgccctatgcattctacatcggagatgaagagctatctgtccagcttggtgcttacatgcagcaaaaaaatggtgggactccaatctgaagttcatctatactttttttcattggggaagaaaaataatatacgctaggtgtggtgtatcatttctgatttgtatattttggtttaatgaatgaagcaaatgttgaggtcaccctgcgcatagtatatcaaccacaagcagttttccgcatcaggccagtcaaccgatgctctgctacaattgctggtaagtcggattatgttcattacacttgttttcttttctattacaattttatgactctttgtttggtaatttctcatagaactgtaattatcatgggaatatcatcggacagaaatctttgcatttgttttatctgttgtagatgccactgtatgtatccatggttcacaatactagtttgtacaggcctattattcaatagtaatgaatgtagttttatgtagatactttttttgtgtgtttggggtggggaggaggtagaagagtctagagcaggcatattaagatgcttttggacatgtttatcctaggtgatcatcaaatgtttaccatatgcatgaaaaatcaaaactacttatttattttgtgcttagattacactgctgtgaaatgatttgattatcttatccatctgcaggccatacagaagccgtattagctgtctctttcagccctgatggaagatgtttggctagtggttcaggtgacaccactgttcggttttgggatctgaacacgcagaccccattgttcacatgcaaaggtggttctttgaattcttgcatattggtattggtaatttgcagtcatgtttctcatgtcttaaacaactgtaacatttacaatgcattgatgctggtttttatgcttatggcatggctattcttcttgatgataactaagtgcttaccaacatttgtgatttaccatgagagatatcaagctggtcaaactcacaataaacatgtaaattatttttagcattaattaatcttcatagtcagtgtttaatgttgtagtaattcattgttgttccttttagattagttctgttgggcaaagctgtgagttagtagccctggaactttaaaatacagaataatttatttcttgttaataacacatcacataaaccgatttttggtcaatatccgatagttccttttgcatactttgtatccaatatcttctaccattagtatttgaaagttagttgttgcatactttgcatcttccaggccacaaaaactgggtgctctgcattgcatggtcacctgatgggaaccatcttgttagtggaagcaagtcaggggagcttatattatgggacccaaaaacaggcaaacaattgggcactccacttacggtgagatcatgaaatccttctcagttaagtacttaagtggtaacctgtaggctgtgtagaaatatgaattaaaaatttatgctagctattgatctgcatatttccagatctcactgccctatgtgtgaatttatgtgtatgtggaaaattagtttgttgaaaagaactgctgcgatgttttttcttggtatgatagattcacatgcacatagttttggacagaatatatggacactgtacttagatattgtggatgtttcattttttcgtgccatccagtactcatttgttgtggacttatacaaattaggggcatagaaaatggattactgctgtatcttgggagccagttcatttgcaagctccctgccgccgttttgtaagtgcaagtaaggatggtgacgcacgtatttgggatattaccacaaggaagtgcgttattgcccttacaggtcacactaattcggtgacctgtgtcaagtggggtggagacggtttgatttacactgggtaagactattgtatacataggtcgtcctttcttcctttttagacaaaggatcacggctttgtcctttatcttttatatgaattattagtttactagcttcagaatatgaattggtttgctaaaacaggtatgccaataaatgcagtaatgccatctgtattcaggattctaccatgtaccagtgttgtcatacacattaacatattttatagtaaaatcgatatattgactttgcagatatatgatgtaaaacctctgtgtttgtcaactctgctaccttttgacagattaatttattgaggccacaaatgactcaaaacaatttttttatttgtcatggtaaattctgaatatgataggataacgaacatatttaatctgtattttgaatggaaatcaatatgcataccagtgcttactgtttctactttggcaatcgtgagcaagaaactacaaatatagctcttagcaacccaggctacaaccctctcttggtgcctcagtattccctgcatttaccaaaatttattaaatctacttatagtgaaatatccaatacttgattttttttaacaccataatttggcttctgatggtaggcatagacctttatctggctaaggcttccagttattttctttttcctcatgcacccattgctattttgttcactcctaatagacagcataactttatgcaaaaatggttgaattctgcactgtagttggttaatctaagttcttattttaacatttaccatgagtgtttgtagtaatgccacacatgaatacatgatacttgatggttgatggcgctatacgattatctgtacaaagagctgtttttgagaagtacacttttagaaacaatgatagatggataaaattctaaaaccaatgtatgtgtactgcagttctgaagattgcttaatcaaagtctgggaaacttctcagggaaagttggtcaaaacactgcaggtaatgtaccagcattttcactgggcattctaaagtttatggaaatgtttatgctcccatgagtcagtgtccacattgttatacagatgtactggatctggagatgaatttcaattcaaaacatttggtcctgctgaactgtcaagtttgcatggatctgtagtgaaaccatgtaggaggctgattttagcacaccatattctaattttccttcatcctgaccgacaaaataagctcatgtgaatgcatattctttatgaacaaccaatctgactattcatgtttatttccttctgaaaatacttcgatggctaaaataattcggtcatttaagatacaggtaggctatgaaaggccatatttgcttggtttgggctcaaagaccaaggaacaattcatatttactaggatgcccatatacgaaatgctaagccaaaccctcctgatactaattgcaccaggcgcatgctgacagcctgtgtgcaatagctagctgataatggttgctttgtgaatagaaaaattcattgccaaatagttgaaggtttactctaaatgggggttgggggtatgaaaatttattttggacaatatgtgcttcccacaatgatcaaactaacccctccatttttttaataTttttaagttttaaccaacgtcttacaaaagaaaatggaggaagtaatattgtattcttgaattcatgaatcaagtaccaaataccaagtatcctttcaattgtgaatcatcagtcgtatccaagaaacgattttgtggattatttttaatattattttgttgctatttttgcacatttactggacttaatatttttgtagcagtgaattatttccatactttcaagtcagctattctatgctagttgtcagtgtctgtcatctttttaaagtagttactacacatatgcagggtcatgggcactgggtcaattcacttgctttgagcaccgagtatattttgcgcactggggcttatgaccatactggcaaaacatattcaactgcagatgaaatgaaggaggtatgatgcaatcataaatcagtgctaaaactgtttttgttgtttccatttgtcgcttgctgaaatgatttttgtgacttgagaattttgaatattcaggcagcccttgcaagatacaagaagatgaggggcaatgcgcctgagagactagtatcaggttctgatgattttactatgtttctctgggaaccaacaattagtaaacagcccaaagctcgcatgactggtcatcaaaaggtatgttgtcttgacagctccagcaaattttcttgcatttgtacatttcaacttgtgccgtttcttgctctcagttctgccccattgaatactgagaacagattgggaatcctctgagttccctcccccaaactttacaataataatgaatcagtgtcattgaattaatggtctgaaagcgtccaaacccatctagagatcagattattgttataatcattagaacttttctaagttgtcaaatggctcgaacaagttgacataaaccaactgatattatggctttgttttattaagccaggttaaattctttatctatacctgtgcttataaatgattttgtcatttgctttgctttgtgcagctcgtaaaccatgtctacttctctcctgatgggcagtggttggccagtgcctcctttgacaaatctgtcaagttatggaacggtattacaggcaaattcgttgcagctttcagaggacatgttgcagatgtctaccagatcaggtagggtttccatcttcctagtgtgccattaatacatgctgtgatgcctaatatcattatttctttgttcagctggtctgccgacagtaggcttctactcagtggaagcaaggattccaccctaaaggtatatatttgtctccatttggttctggcatacaaaatcctgtcttttatgtggcgagcaccaacaatccattcagtttgtatgttgcctttgaggagttactgtgatgcttcaataatcatcccaaaaactggtgaatccaacatgaaaatttgctgaaactgctactgagatgtcataattgtttctaattttatgcatactggattataaactcaaattacttgtatagcatggaccttgatagcacaaactgaccgatacacttatctttttttatgaggctctatctccccgtgaatatctaactgctgagcgctgacgctctctgtttgtataattcaggtttgggatattcgaacacacaagttgaaacaggacttgccaggccacgcagatgaggtacgcatatattttccttttgttgtctagtaagtccattttgttccagactaactgcgcgggtaagtctagaacaatcagcatgatattcacatttgtatgtaacatctgtaaggtgtatgctgtggattggagccctgacggtgagaaggttgcatctggtgggaaagacagggtcctcaagctttggatgaactagggccggctgattcttctgaccacccgttaagcttgttctcatggtggcactaaacattgaactcatcaatcggtcacaaagtcggaagctgggagtagatcatggcggttaacttgcaaggttgttcaagaggagattgattacctaggaaggacatacattcaaaccatactccatgaagtcaacatgcaattcccaatttgttggagcaatcacaaccgatttcagttcaatgatttgaagggatgtgagcgccatggaaatgcaagttcttcccatggctggccacccaaaataggatttacttacatcggtcaggctagctgttagagactttttagaggccatatcaccgaacatgcaaaggaaaaccaccatgatcagcaaacagttgttcctgtcctcacatcctgcagtctgcagatagtctgggtttgggcatatgtaatcataggatgagtctcctttgctgtattgcaatctgacacgggtcactgacatatgggcccattggttttggggatatatgtcagccactgaaagttagaggatctgattccataatcatatgatcggtgtatggt
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| CDS seq | atggagaaccgagatcagcaggagcccggcagcggcagcggcagcggaagcgtgatgtgccagctcgtcaatcccgagggagaccacctcggcgccgccctctacctgccgcagaacgtcggcccgccgcagcttcaggagatcgtcaaccatcttctccacaacgaggacaagttgccctatgcattctacatcggagatgaagagctatctgtccagcttggtgcttacatgcagcaaaaaaatgcaaatgttgaggtcaccctgcgcatagtatatcaaccacaagcagttttccgcatcaggccagtcaaccgatgctctgctacaattgctggccatacagaagccgtattagctgtctctttcagccctgatggaagatgtttggctagtggttcaggtgacaccactgttcggttttgggatctgaacacgcagaccccattgttcacatgcaaaggtggttctttgaattcttgcatattggtattggccacaaaaactgggtgctctgcattgcatggtcacctgatgggaaccatcttgttagtggaagcaagtcaggggagcttatattatgggacccaaaaacaggcaaacaattgggcactccacttacgttctgaagattgcttaatcaaagtctgggaaacttctcagggaaagttggtcaaaacactgcagggtcatgggcactgggtcaattcacttgctttgagcaccgagtatattttgcgcactggggcttatgaccatactggcaaaacatattcaactgcagatgaaatgaaggaggcagcccttgcaagatacaagaagatgaggggcaatgcgcctgagagactagtatcaggttctgatgattttactatgtttctctgggaaccaacaattagtaaacagcccaaagctcgcatgactggtcatcaaaagctcgtaaaccatgtctacttctctcctgatgggcagtggttggccagtgcctcctttgacaaatctgtcaagttatggaacggtattacaggcaaattcgttgcagctttcagaggacatgttgcagatgtctaccagatcagctggtctgccgacagtaggcttctactcagtggaagcaaggattccaccctaaaggtttgggatattcgaacacacaagttgaaacaggacttgccaggccacgcagatgaggtgtatgctgtggattggagccctgacggtgagaaggttgcatctggtgggaaagacagggtcctcaagctttggatgaactag
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| Protein seq | MENRDQQEPGSGSGSGSVMCQLVNPEGDHLGAALYLPQNVGPPQLQEIVNHLLHNEDKLPYAFYIGDEELSVQLGAYMQQKNANVEVTLRIVYQPQAVFRIRPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLNTQTPLFTCKGGSLNSCILVLATKTGCSALHGHLMGTILLVEASQGSLYYGTQKQANNWALHLRSEDCLIKVWETSQGKLVKTLQGHGHWVNSLALSTEYILRTGAYDHTGKTYSTADEMKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWSADSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWMN |
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| Function | Notchless protein homolog [UniProtKB/Swiss-Prot:Q9FLX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0018730 | OsLiXu_11g0018730.01 | Chr11 | 25788358 | 25794593 | + | NAM | ||
| CDS seq | atggagaaccgagatcagcaggagcccggcagcggcagcggcagcggaagcgtgatgtgccagctcgtcaatcccgagggagaccacctcggcgccgccctctacctgccgcagaacgtcggcccgccgcagcttcaggagatcgtcaaccatcttctccacaacgaggacaagttgccctatgcattctacatcggagatgaagagctatctgtccagcttggtgcttacatgcagcaaaaaaatgcaaatgttgaggtcaccctgcgcatagtatatcaaccacaagcagttttccgcatcaggccagtcaaccgatgctctgctacaattgctggccatacagaagccgtattagctgtctctttcagccctgatggaagatgtttggctagtggttcaggtgacaccactgttcggttttgggatctgaacacgcagaccccattgttcacatgcaaaggtggttctttgaattcttgcatattggtattggccacaaaaactgggtgctctgcattgcatggtcacctgatgggaaccatcttgttagtggaagcaagtcaggggagcttatattatgggacccaaaaacaggcaaacaattgggcactccacttacgttctgaagattgcttaatcaaagtctgggaaacttctcagggaaagttggtcaaaacactgcagggtcatgggcactgggtcaattcacttgctttgagcaccgagtatattttgcgcactggggcttatgaccatactggcaaaacatattcaactgcagatgaaatgaaggaggcagcccttgcaagatacaagaagatgaggggcaatgcgcctgagagactagtatcaggttctgatgattttactatgtttctctgggaaccaacaattagtaaacagcccaaagctcgcatgactggtcatcaaaagctcgtaaaccatgtctacttctctcctgatgggcagtggttggccagtgcctcctttgacaaatctgtcaagttatggaacggtattacaggcaaattcgttgcagctttcagaggacatgttgcagatgtctaccagatcagctggtctgccgacagtaggcttctactcagtggaagcaaggattccaccctaaaggtttgggatattcgaacacacaagttgaaacaggacttgccaggccacgcagatgaggtgtatgctgtggattggagccctgacggtgagaaggttgcatctggtgggaaagacagggtcctcaagctttggatgaactag
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| Protein seq | MENRDQQEPGSGSGSGSVMCQLVNPEGDHLGAALYLPQNVGPPQLQEIVNHLLHNEDKLPYAFYIGDEELSVQLGAYMQQKNANVEVTLRIVYQPQAVFRIRPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLNTQTPLFTCKGGSLNSCILVLATKTGCSALHGHLMGTILLVEASQGSLYYGTQKQANNWALHLRSEDCLIKVWETSQGKLVKTLQGHGHWVNSLALSTEYILRTGAYDHTGKTYSTADEMKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWSADSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWMN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0018730 | OsLiXu_11g0018730.02 | Chr11 | 25788316 | 25795177 | + | IsoSeq | ||
| CDS seq | ctagttgaccatctcgcttcccccttccccgcctcctctcgagttcacctgccacccgcccgccgccgccgccgccgccgccgagcagctactggtgccggccgccgtcctcctgcttccgccgccgggatttcagatggagaaccgagatcagcaggagcccggcagcggcagcggcagcggaagcgtgatgtgccagctcgtcaatcccgagggagaccacctcggcgccgccctctacctgccgcagaacgtcggcccgccgcagcttcaggagatcgtcaaccatcttctccacaacgaggacaagttgccctatgcattctacatcgg
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| Protein seq | LVDHLASPFPASSRVHLPPARRRRRRRRAATGAGRRPPASAAGISDGEPRSAGARQRQRQRKRDVPARQSRGRPPRRRPLPAAERRPAAASGDRQPSSPQRGQVALCILHR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 25788444 | 25788596 | + | OsLiXu_11g0018730.02 | OsLiXu_11g0018730.01,OsLiXu_11g0018730.02 | All |
| SE | Chr11 | 25790592 | 25792017 | + | OsLiXu_11g0018730.02 | OsLiXu_11g0018730.01,OsLiXu_11g0018730.02 | All |
| A5 | Chr11 | 25789989 | 25790465 | + | OsLiXu_11g0018730.01 | OsLiXu_11g0018730.01,OsLiXu_11g0018730.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.252674 | 0.0 | 0.369698 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0594200 | RBH | 1.673088 | 1.318215 | 4.028183 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38170 | RBH | 1.117154 | 0.877927 | 1.073239 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0594200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019100 | RBH | 1.228075 | 4.986028 | 4.417761 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019280 | RBH | 0.189479 | 2.956726 | 2.284397 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019100 | RBH | 1.041299 | 11.861526 | 5.295037 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018770 | RBH | 0.051661 | 0.224717 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019050 | RBH | 2.943973 | 12.779589 | 12.920444 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0348700 | SBH | 2.7087335 | 10.17656 | 8.811277 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019620 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0361400 | SBH | 2.6441715 | 7.917672 | 13.9191795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019390 | RBH | 0.108573 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019550 | RBH | 0.972678 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019050 | RBH | 0.000000 | 10.693826 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018870 | RBH | 0.000000 | 0.606924 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019050 | RBH | 0.531295 | 3.310673 | 4.148380 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019320 | RBH | 0.726930 | 10.342424 | 1.850067 |
