Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0016490 | OGI:11060270 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:23338660-23340547 | ||||||||
| Gene Symbol | OsLTPx3, OsLtpY.3 | ||||||||||
| DNA seq | ggagctcttccaaatgggcaaaccatagcagtcaagaggctgtcgcgttgctcacagcaggggataggagagttgaaaaatgagctagttttggttgggaagcttcaacacaaaaaccttgtgagactagtgggtgtttgccttgaggacgaggagaagCTACTTGTGTATGAATACTTGCCCAATAGGAGTTTGGACACTATTCTTTTTGGTATATTATTTGTCTTTTTTTTAATACTATTAAGTTTTCTTTTAACATTATACTCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTTGTCTTATTCAAAAAATTTACGCAATTATAATTTATTTTGTTATGAGTTGTTTTATCACTTATAGTACTTTAAGTGTGATTTATATCTTGTACATTTACATAAAATTTTTGAATAAGACGAATGGTAAAACATGTGAGAAAAAGTCAACGGCGTTATTTATTAAAAAACGGAGGTAGTACTATTAAGTTCGGTATATATTCATCACTCACAATGACGCGAAATCTCCTTttatatttattggtggcagatcaagataaaagcaaggaattggactgggagaagagattcaggatcataagtgaaattgctcgagggctacagtacctgcacgaagaatctcggttgaaaatcattcaccgggatctcaaagctaacaacattctactagattccgatttaacccctaagatttcagactttggcttggcgaagttatttggaggggaccagtcgcacattgtcacaaatcgtgtagctgggacatagtaagtgccttctcaaattcaatccattcattctgttttatcttactttctttctttgctaatttttatgcccttaTttgtcttcaaatattaatgaaaattataaaccttggttacaacttacatgttaagaaaaatagtttctatccatgtgacatcacacaaaaccataatttcattctctgagattattttctaaaaagaactagtatatttgtaggacttatattgtgcacatttctttaggcgtaccatgatactagttgaattttgtttccattatagtggatatatggcaccggaatacgctatgtgcgggcaatactccatcaagtccgatgtgttcagcttcggtgttataattctcgagatcctcaccggaagaaaaagcatgggctcctacaactatgacaatctgtcagccttttgggccttgtgagtaacaatgatgcataatacggaggatttatattatgggcttgttcggcatagtttaactgcggctgtacagcacagcagctgcagccatcatgctatgctttatatagtagatactgttataacagcgctgtggctgcagcagccatctgaaccgaacaagccctatttacacattacaatgcagatttagcccccattcactcgcaatttcaaatttgaacaagacaaagattcagtccacccatttagaattcaaaatatagtcgatctgcaattcgtggtatctccttataaaaaatcatcctaattaacaaagtgcttgtcaactatatatgtgccacagatatgacagcattggacggctggaacagttctagagctgcttgatccttcactgatcagcagcagccagcagtgctgtgacgacagagaccagatgctgaggtgcatccacatcggcctgctctgtgtccaggagaaccccgctgaccggccgatgctgtcgtcggtcaccgtgatgctccggagcggcacgccgccgctccgggctccgacgaggccggcgttctgcatgccctgggctgccggtggtgagaactcgaggcaagataggtcagaccaattttattaaaccttgaaac
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| CDS seq | atgatgcataatacggaggatttatattatgggcttgttcggcatagtttaactgcggctgtacagcacagcagctgcagccatcatgctatgctttatatacattggacggctggaacagttctagagctgcttgatccttcactgatcagcagcagccagcagtgctgtgacgacagagaccagatgctgaggtgcatccacatcggcctgctctgtgtccaggagaaccccgctgaccggccgatgctgtcgtcggtcaccgtgatgctccggagcggcacgccgccgctccgggctccgacgaggccggcgttctgcatgccctgggctgccggtggtgagaactcgaggcaagataggtcagaccaattttattaa |
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| Protein seq | MMHNTEDLYYGLVRHSLTAAVQHSSCSHHAMLYIHWTAGTVLELLDPSLISSSQQCCDDRDQMLRCIHIGLLCVQENPADRPMLSSVTVMLRSGTPPLRAPTRPAFCMPWAAGGENSRQDRSDQFY |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0016490 | OsLiXu_11g0016490.01 | Chr11 | 23338660 | 23339904 | + | NAM | ||
| CDS seq | atgatactagttgaattttgtttccattatagtggatatatggcaccggaatacgctatgtgcgggcaatactccatcaagtccgatgtgttcagcttcggtgttataattctcgagatcctcaccggaagaaaaagcatgggctcctacaactatgacaatctgtcagccttttgggccttgtga |
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| Protein seq | MILVEFCFHYSGYMAPEYAMCGQYSIKSDVFSFGVIILEILTGRKSMGSYNYDNLSAFWAL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0016490 | OsLiXu_11g0016490.02 | Chr11 | 23339911 | 23340547 | + | NAM | ||
| CDS seq | atgatgcataatacggaggatttatattatgggcttgttcggcatagtttaactgcggctgtacagcacagcagctgcagccatcatgctatgctttatatacattggacggctggaacagttctagagctgcttgatccttcactgatcagcagcagccagcagtgctgtgacgacagagaccagatgctgaggtgcatccacatcggcctgctctgtgtccaggagaaccccgctgaccggccgatgctgtcgtcggtcaccgtgatgctccggagcggcacgccgccgctccgggctccgacgaggccggcgttctgcatgccctgggctgccggtggtgagaactcgaggcaagataggtcagaccaattttattaa
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| Protein seq | MMHNTEDLYYGLVRHSLTAAVQHSSCSHHAMLYIHWTAGTVLELLDPSLISSSQQCCDDRDQMLRCIHIGLLCVQENPADRPMLSSVTVMLRSGTPPLRAPTRPAFCMPWAAGGENSRQDRSDQFY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0672200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g34610 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0672200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016900 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016880 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016840 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016760 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0318000 | SBH | 0 | 0.053749 | 0.022863 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017240 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0327900 | SBH | 0 | 0.0245965 | 0.023496 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017110 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016650 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016610 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016950 | RBH | 0.0 | 0.0 | 0.0 |
