Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0672200 | OGI:11077460 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27152574-27153181 | ||||||||
| Gene Symbol | RLCK351, OsRLCK351 | ||||||||||
| DNA seq | AAAGAAAAGGAAGTCTGAACTTACATGTATCAGGCATGGGTGAGATCATGGTGCTGCGGCGCGCGCGTGGCGCGGAGGCTGAAGGAGCTGGTCGACCCGCCGCTGCACGCCGCGTCGTTCCGCGGCGGGGCGCTGCCGCGCTGCCTCTCGCTCCCGGCGAGGCGGCGCGCGCTGTCGCAGCAGCGGGAGATGCGGCGGTGCGCCCGCGCGGCGCTGCTCTGCATCCAGGAGAGCCCCAAGCGGCGACCCGCCATGCCGGAGGTTGTCCACATGCTGCGCCCCAGGGGGAAGGCCACGCCGCCGCTGCCCGGCCGGTCTCGATTCACCGCGGCGAGGGCGAGCTCGATCCACGGCGGCGAGACGAGCAGCTGATTGATGGATTGTTCATCATTGGAAGAGAGCAATTTGTAGTATTCATGAACTGAAAACAGTTCAGAGTTTTTCAGACGAACACAAGAGCACTGAACTGAATAGCTGAAGAGGTTCAGGAATGATCAAATCCTGATATATGGAAACATTTTGGTGGGTTTTCACTCATTTTCACTGGTGTAAACTAATGCCGTCAGGTGAAATGCTGATACGAAATGAAATCCTTTTGTAGTTGCAGT
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| CDS seq | ATGTATCAGGCATGGGTGAGATCATGGTGCTGCGGCGCGCGCGTGGCGCGGAGGCTGAAGGAGCTGGTCGACCCGCCGCTGCACGCCGCGTCGTTCCGCGGCGGGGCGCTGCCGCGCTGCCTCTCGCTCCCGGCGAGGCGGCGCGCGCTGTCGCAGCAGCGGGAGATGCGGCGGTGCGCCCGCGCGGCGCTGCTCTGCATCCAGGAGAGCCCCAAGCGGCGACCCGCCATGCCGGAGGTTGTCCACATGCTGCGCCCCAGGGGGAAGGCCACGCCGCCGCTGCCCGGCCGGTCTCGATTCACCGCGGCGAGGGCGAGCTCGATCCACGGCGGCGAGACGAGCAGCTGA |
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| Protein seq | MYQAWVRSWCCGARVARRLKELVDPPLHAASFRGGALPRCLSLPARRRALSQQREMRRCARAALLCIQESPKRRPAMPEVVHMLRPRGKATPPLPGRSRFTAARASSIHGGETSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0672200 | OsNip_11t0672200-01 | Chr11 | 27152574 | 27153181 | + | RAP2018-11-26 | ||
| CDS seq | ATGTATCAGGCATGGGTGAGATCATGGTGCTGCGGCGCGCGCGTGGCGCGGAGGCTGAAGGAGCTGGTCGACCCGCCGCTGCACGCCGCGTCGTTCCGCGGCGGGGCGCTGCCGCGCTGCCTCTCGCTCCCGGCGAGGCGGCGCGCGCTGTCGCAGCAGCGGGAGATGCGGCGGTGCGCCCGCGCGGCGCTGCTCTGCATCCAGGAGAGCCCCAAGCGGCGACCCGCCATGCCGGAGGTTGTCCACATGCTGCGCCCCAGGGGGAAGGCCACGCCGCCGCTGCCCGGCCGGTCTCGATTCACCGCGGCGAGGGCGAGCTCGATCCACGGCGGCGAGACGAGCAGCTGA
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| Protein seq | MYQAWVRSWCCGARVARRLKELVDPPLHAASFRGGALPRCLSLPARRRALSQQREMRRCARAALLCIQESPKRRPAMPEVVHMLRPRGKATPPLPGRSRFTAARASSIHGGETSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44860 | RBH | 0.082263 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0672200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023410 | SBH | 0.000000 | 5.904353 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023330 | SBH | 0.052809 | 0.0 | 1.302209 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022980 | SBH | 0.510524 | 4.293020 | 1.155933 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022780 | SBH | 0.081396 | 0.030739 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022980 | SBH | 0.618538 | 11.096627 | 0.796510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0409100 | RBH | 0.061856 | 1.994199 | 0.0070065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023820 | SBH | 0.000000 | 0.302426 | 0.116180 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0427700 | RBH | 0.02804 | 2.38737 | 0.08786 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023700 | SBH | 0.680464 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023160 | SBH | 0.000000 | 4.842212 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022810 | SBH | 1.314679 | 0.0 | 0.581604 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022930 | SBH | 0.000000 | 1.447865 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023200 | RBH | 0.0 | 0.0 | 0.801179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023610 | RBH | 0.0 | 39.693550 | 0.0 |
