Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0013200 | OGI:11047000 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:18723268-18725649 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaatatcaaagcaatatttttcaaattctcactcaaatgtgttccaaacatacacaaaataattgtgtcagaacagacatggtaaatgccatgcaagtcgcgattatatgaataggacaagagagaAGaaaaaaaaagagaatacatgttctacgtgcaactcacaagtaaatatccacttgttgacgtgaagaacatagatacatatacaaataaatagcatttacacacaatcaaaataagcacatttatttagaacaccattcacctggctgaaagttgtgatatcgaaacagtagctttggatgcagaagatgaactggaggttgatgtttcacctggcactctacgagttgcatcgataaaagtcggtctcgtgggctggaactctagagcatttcttgtcagcaacaacacaactacctccgacatcattggccgtgatgtgacagccgattgagtgcacagaagggcaatctccattgttcttttcacctcctcgttattgtattcttctgggtctaatgatctgtccaccaattcaatcaagttgttgtcttcataaagcttccaggcctgtaaaacaagaaggcatgatcaaatttacatttaacaaaatgtccataatacagtcttgcattacaaaagatcttaatagtcattacaagatgatcatatgatctacgaagacatttctttctcaaattgaaaatgaacaattcaaattgtttggtcctgatcttaacatggacaaattttggtggaaccttgatattagaaaatatgccatctcggcaataactttatcaaatttaatatgtacaataaaaaatagcaaatacattcatatcaggaattgtacgaatataatcataagcgcaaacacctgtacggttgtatgagaaatatgcagttaaaatgtggtatgtgtccaagagaaaaaagaagtttttagaatgactgatacccattcaagtaggtactggctatcaggctccagccttgcatcattgagcttcctaccacctattatttctaaagtgactacaccaaagccgtatgtgtcaaccttctctgagagttgcccatggatggcatattcaggagctgtgtaacccctgcttaagtaaacataattagaaacacaacatatgcccttaaaacgatattttcatcttcaaacttacaatgttcctgcaaaattagtgctgagatgactatgatcatcaggtatgagccttgctaaaccgaaatcagcaatctttggttgaaactcgtcatcaagaagaacattgctagatttaatgtcacggtgtatgatgcgcacatggaattcttcatgaagatatgcaaggccacgagccatgccgataatgatattaaatcgctgcttccaattgagggcgacacttttctcacctataacaacaaaaatgaggccattgccaaaagagaatgtaggtcagcacgatcatctttaagctaattaacttcagtctacacttgatcattagcaatgcgattccccctcttaaactacacatataagtatgtttggatcccccaatcaccatgccttgcctggcaaggataaactagcccatcatagctaaagccaatagaagctaacatgaacgtttggttgcgtagcttagctaagagtaactgctccgcatgccagggatccaaacatcccctcagaatgtgtaccaattgaagtatgatatcaaatggaaatgccacatgaacaaaaaaaaaaaagcttccatatgtccatcaagtgcccagaaaatttaaacaataaaaacaataaagacttgaggtctttgcttaatgaaatgacacacagatcccctgcatgttcaaaagaaaactaaagaactgagaaacataccaaagaggaacttatcaaggcttccatttgccatgtattcataaacaagcaggcattctgagcccttgcttgcgcaaccaagaagccggacaagattccgatgatgaacattgctaatcaacttcacttcactttcaaaatctgctttggccctgctagtttccataactgttaaccgttttacagctacagttttcccatttttcagcgaagcctgtcataaatgtacttttttcaatatttattttaccattttgtatagtcaaatagcaacactggtgatcagatgtttttattctacttagagttgcatcttgtcttagaatcagtacagaagattcaatatttgactattgtaataccttaaatacatctccaaatcccccttctccaagtttgctttgctcactgaaattattggttgcaacctttagatctttatagtaaaaacttgttggaccctgcagttctgttgctccaagaatatc
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| CDS seq | atggaaactagcagggccaaagcagattttgaaagtgaagtgaagttgattagcaatgttcatcatcggaatcttgtccggcttcttggttgcgcaagcaagggctcagaatgcctgcttaaaagtgtcgccctcaattggaagcagcgatttaatatcattatcggcatggctcgtggccttgcatatcttcatgaagaattccatgtgcgcatcatacaccgtgacattaaatctagcaatgttcttcttgatgacgagtttcaaccaaagattgctgatttcggtttagcaaggctcatacctgatgatcatagtcatctcagcactaattttgcaggaacattgggttacacagctcctgaatatgccatccatgggcaactctcagagaaggttgacacatacggctttggtgtagtcactttagaaataataggtggtaggaagctcaatgatgcaaggctggagcctgatagccagtacctacttgaatgggcctggaagctttatgaagacaacaacttgattgaattggtggacagatcattagacccagaagaatacaataacgaggaggtgaaaagaacaatggagattgcccttctgtgcactcaatcggctgtcacatcacggccaatgatgtcggaggtagttgtgttgttgctgacaagaaatgctctagagttccagcccacgagaccgacttttatcgatgcaactcgtagagtgccaggtgaaacatcaacctccagttcatcttctgcatccaaagctactgtttcgatatcacaactttcagccaggtga
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| Protein seq | METSRAKADFESEVKLISNVHHRNLVRLLGCASKGSECLLKSVALNWKQRFNIIIGMARGLAYLHEEFHVRIIHRDIKSSNVLLDDEFQPKIADFGLARLIPDDHSHLSTNFAGTLGYTAPEYAIHGQLSEKVDTYGFGVVTLEIIGGRKLNDARLEPDSQYLLEWAWKLYEDNNLIELVDRSLDPEEYNNEEVKRTMEIALLCTQSAVTSRPMMSEVVVLLLTRNALEFQPTRPTFIDATRRVPGETSTSSSSSASKATVSISQLSAR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 [UniProtKB/Swiss-Prot:C0LGH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0013200 | OsLiXu_11g0013200.01 | Chr11 | 18723268 | 18725649 | - | NAM | ||
| CDS seq | atggaaactagcagggccaaagcagattttgaaagtgaagtgaagttgattagcaatgttcatcatcggaatcttgtccggcttcttggttgcgcaagcaagggctcagaatgcctgcttaaaagtgtcgccctcaattggaagcagcgatttaatatcattatcggcatggctcgtggccttgcatatcttcatgaagaattccatgtgcgcatcatacaccgtgacattaaatctagcaatgttcttcttgatgacgagtttcaaccaaagattgctgatttcggtttagcaaggctcatacctgatgatcatagtcatctcagcactaattttgcaggaacattgggttacacagctcctgaatatgccatccatgggcaactctcagagaaggttgacacatacggctttggtgtagtcactttagaaataataggtggtaggaagctcaatgatgcaaggctggagcctgatagccagtacctacttgaatgggcctggaagctttatgaagacaacaacttgattgaattggtggacagatcattagacccagaagaatacaataacgaggaggtgaaaagaacaatggagattgcccttctgtgcactcaatcggctgtcacatcacggccaatgatgtcggaggtagttgtgttgttgctgacaagaaatgctctagagttccagcccacgagaccgacttttatcgatgcaactcgtagagtgccaggtgaaacatcaacctccagttcatcttctgcatccaaagctactgtttcgatatcacaactttcagccaggtga
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| Protein seq | METSRAKADFESEVKLISNVHHRNLVRLLGCASKGSECLLKSVALNWKQRFNIIIGMARGLAYLHEEFHVRIIHRDIKSSNVLLDDEFQPKIADFGLARLIPDDHSHLSTNFAGTLGYTAPEYAIHGQLSEKVDTYGFGVVTLEIIGGRKLNDARLEPDSQYLLEWAWKLYEDNNLIELVDRSLDPEEYNNEEVKRTMEIALLCTQSAVTSRPMMSEVVVLLLTRNALEFQPTRPTFIDATRRVPGETSTSSSSSASKATVSISQLSAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.184463 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0470500 | SBH | 0.0 | 0.118605 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g28104 | SBH | 0.0 | 0.072868 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0470500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013610 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013550 | RBH | 0.338670 | 0.000000 | 1.718607 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013510 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013290 | SBH | 0.031450 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013580 | RBH | 0.493559 | 0.0 | 8.945413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0248700 | RBH | 3.559532 | 10.889134 | 0.3170075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013540 | RBH | 0.619767 | 0.0 | 0.083274 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0264000 | SBH | 3.831233 | 18.659854 | 0.3127725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013650 | RBH | 0.090061 | 0.140203 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013720 | RBH | 1.110686 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013350 | RBH | 10.748864 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013350 | RBH | 0.240992 | 0.0 | 0.840026 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013540 | RBH | 0.973562 | 3.245612 | 3.853918 |
