Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0007200 | OGI:11017610 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:6294740-6302145 | ||||||||
| Gene Symbol | RLCK316, OsWD40-186, OsRLCK316 | ||||||||||
| DNA seq | attggctagatctgattatataagttttgaaactataaactctgttttatttttgctcgacagaaatattctgaaaattttcagaatatgctgggactgttaattcattcaaaaaagaaaaaaaaagcactggaatgcaaaaggaatgagaaaaaacaaagtttgttttcttaatacaggtaatatccactacatcagattacaaaactttggttatccaagtcttctctccacgttgctcatttagtcttctgaatgagttaattaagcgcagtaccattatctgtctccaatccagtctgcctagcttgacaccaacactccaacagtttgaatatccttatctgttgctgggaccaggcttttcatggcgaatttcagtaatcactaatccagcatcatgtccaatcacaactctgcaacagtaagatcatttcaaaaagaactctgaattaaataaagaatgcagagcacatccttaatgcatagtgcatcatacatctttgtagtcacagaagaagaaaaaaacatgccagctacaaatgttaagaagagttcatatggtaaggtgtgaatgtgtgatgacagtttttacaaaaatagacaattgcagcaaaggcagatcttctactttaaaactcaagaactgagttaacaaatttgaggaaaagataaattttaatttcaacaaatttatcaaaattgatgttttcagtcaagtttattttgatttacacaattacacttgcagaagtattatcagggaagcagtaatattcccaacaatctaacatcaagatgaatacccttttaattactcaccgttttgagcccttcaaacaaattatagcagtaacttgtccgagctcaaagtccagtacaccctcaagcctagaagattatgaaaaacaatgtcatctctgaaactttcggacagaaaaaacatggcaagatcacatctaaatcctagaagttatgtgttgggcgcagttagatgtacttacttgaaggttatggagttccacagacgaactgtctcatcatttgaacctgtaagtagtactggaagatctggatgggaacaaacacaggtaatgcaatccgtatgtccttcaagtgtttgaacacaagtccttctctggcaatcccagatctgacataacaagatgaattgcattgcaatgatatttccaaaaaaatgatctcaactcctatgaaaatattcttctttagtgaagatgccttaccttggctgttttgtcccaggaaccagttatcatgtacagttgattgcctcgagtaaagtaatccaagcaactcactatatatccgtgcccagacaatgtgaattcatgacgggaagaacggatattccaaacctgtatttattttcatcaattttttttcatcaataaaagtatacatatgttcgtgttaataacctacactctaaaattgtgcttaccaaattgattggagctaaaccaaaataagaaacaaaaattcattgtacctgtgcatcctgcaagctcgcaatagcaaatttatgtgtatcttttgggttaaattttatttgatatgctatgccatggaggtcaaatgtcttaatgcactcccagcccttgttccagtcccacagcttgatctggtcttgtgagcctactgacagtaggtaaggctcagttggatggacatccaaagttgtgatgttccatacatgagctttgaatctcttcacttgctttactggggactcatatgtgtaaactcttatgaaaccatcttgatgtccaaccacaaaccattgctttcgcgcgatgaacttggccgcggtaactgtagagatggaatttgtaaataagttagcattgttgtgatttgtgacactaggttaaagactatgcatgattagtagcaagtcataaagcatgcctagtgatccatatgagccttgaatcaggttcattgtttcctgtggacaaatatatgggaaaaaaatcttagttcttgaacatacaaaagcatatttcaacttgctaaaattttaagcatgagataacttatgatgaattctatttacagtgtgtagtatatactccctccgtttcatattagttgtttcacttttttcttagtcaaacttctttaagtttgatcaaatttatagcaaaatatagtaatattttcaatacaaaacaaatattgtatcaaaatatattcaatgttaaatttaatgaaactaatttggtgttgtggatgttgctatttttttctataaacatgatcaaaccttaaaaactttgattaagaaaaaagtcaaatgacttatagtatgaaacggaggaagtatatttttaaataacaaaagatgtttcttttttacatccctggcttctttatcagaaatataaccaaatatcagtccctcgagaaaacatgtatctaaatatttgaattaaaaaacaagttattgagaaacctaggacctcacactccatacatagccaccttactatcccatgtactatgaatcacctcgttttgcttacaatatttctattagtatggttattcagttatgtcaagttacctccctgtgagttgacatattttgaaactagatattagtgaataactacattaaaggaaatattgacctcataacattaaaggaaatattgtaggaatcccaaataactttggttggcctcaatcagaattaaaatgatttttctaagaatttgtaaatatcaagcattttcaaagaataagtaaacaaataataaaaaaaaggatatggaggcttgttacaaatgtttgagcccttaaaagacctcaaatgaaaataaaaacattaaagtacaaagctatctcaccgagagtcataattttcatataaagtttgttctaatccaacttcatatgaaaaggttgtgaTttttttttttttggaatagggtcgtttccactttttacaggtgattaaataaatagatttgagacattgtaacaagtgtttgagcccctaaacaatatggaatgaaaaaactttcaactatatcgttgatagataaacttttcataaaaagaatgttgttttcatccgacttcatataaaaagttatgattttttttcgttgggatagggttgtttccatttttatatgcggttaataaataaatatgagaccttgtattgtaatgaatctttgagtccctatatgatctcaaatgaaaaaaaatcaacaacaatgtagatttcgtctagagctataattttcatataaagtttgtctgacttaatatgaaataacgaggatggcacctacaaaagtagttttttagtagtgaatgaaatgaagtcctttttcctgatccataaggatattctgtgagataccacaccagccattttgttttaacatgtactacttggtattttcctagtatagcggtagcacaaattaacactaaagtagcatatgcagcttaccgagactaaacttatacctgcgtattacagttcaagatgtcaactgagccaaacatattgctcgtcaagatcctgtgtacataagaagaactttacttatagccgatgttttacagctgcttcaagaaggaaatatagtagtgttcaaagatagtaaaagagaaacaggtctaacctgattttgtgtaccctaactattattgtagcataagcgcataactgagtaaaagaactttcataaggaaaataatgagaaacataaccattgtttaagtcatttgtcctctacttccctttttcaaataaaaaaaaacataacaattgttaaatgaaaacttacacatcagtatatttccccataatttttatttttgtttttagctctaaaataatatgggatcatgccagttgtcaagtgtatttaccatcaaagtagtgaactaatacacaaacattttttccttttcttttggatatacacacaaatcttggtttcgtttgttattatggagaaagactagaacatatgcagtttatctcctctcagaccccaaaaaagaaagactattcacataccatggctctgatggatgcacatctcttggaaaatcaggatgctccattgggatgatctgatcaaatgaaacaacaactgaagttaacgaaataataaaatgaatggtttttcaaatatgataaaagtatgcaaccggcatggtttcagtgtaaaaaacagctaaatttaatttcacctgatcttcctcttggtcctcctctttctctttggaacatgattcattatggtgatcaggttcttggttttctctggtctcatttaagttcaaatggcttgccaatttgctctcaaggttgatagactcgttgttgtatgagggtagcttctccaaggcatggtctatcggcagctaaataaggtcaaaattaatgaagttaatataaagagtaaatttcataaaaccctacctattatggtccaagtttcacaaaaccagatgaactttggcacatggcacgtaacctcaggtattatggtcttaacgtttcacaaaaccacattactaaccattttgactttgatctaccacacttttgagttctacaatcacatctcaaaattatgagcattttatccatcatataaatgttacaaccgcctttactattttgatgtagcaatatgtcaaaatggtaaacggtatggctttgtgaaactttaggaccataattcctgtggttatgtgccacgtgtcaaattttatgtggttttgtgaaatttagaccatattatatacagtttaatgaaatttactctaatagaaatgctacagtcggtgaataaatatgaattcaacatatatatatgcatgttttcctttcagaaaaaatgcaaatacatgtttttgcgatacctagctatgaaattgtgcactcagcatgatatgaagcaggtttgatggtagaaaactggaactggtcattacacgtttggtcccctagattgattactgtcataaaaatgcaattccaagatgcaggggaaatagtgaaacagaggatgttgatttgtggcaatccctaataaacaaggaatatactatgaaaatgagtgtaaactcatcccttgatacatcataattgtttttgagtaaatcattatattatcaaatagatgatgaatacgatactgccgcatcgacacaagtaaaattattccactgtattcgtttatgaaggacattgcactgttacctatttataaacaaaacacatgctagtaatgattaattacctcaccaattatatcttctttctcattaatttgattgatgatttccaatatattaggcctattttccctatcaatttccaggcatttcagtgctatctcagtgcatgtctttacttgctggcaatatgcttctagtaagggaccattccttcttgtctgtaacctgtttttccatttcccttgtacctgtgagattagaatatatataaagatgaagaactattcaaacgaaatagaatactcccttcgttttgaaatatttgacgttggatagttcatttttaactaaccagcgccataaaaaaacagagagttgtttagttagaaataaacgttggttctgaactcctgattacttgattggtaaattctagggaaggcattttcgtgcttctgaagcgtcctgtaggtcctgcaattatatctagcattacagcgcccaagctgaatatgtctaacttgtttgatatttctttcctctctatgtattctcgtggcatgtatgggctgcaaagggacaaataatacgatgaatttcatataaatcacatttcttattgttagaaaaggattcattcaaatgagttatatattcagcttacagagtcccaacaagattttttgtgatcattgttttctcttcagtgatgaacctagacaaaccaaaatctgcaatttttggcaccatgttgttgtctagcaaaatattggcaggctttaggtccaaatggtaaataggtgggttcatttccacatggagatgttttaaaccctcacatgtccctttaataattttgtaccgtatgggccagtcaagaccatcatcttcatctgcaaaggtaaacaaaagatatatcaacagaatgcaaatacatatgactaattttcttccaagctgaagatgtactccctccagttccatagtacatgtcgttttggataagaacataatcttacattttttttctaaaccaaagtttttaagtttgatcaagtttatagaaaaaatatagcaatatctacaacataaaacatactataaaatatatattcaatgttagatttaatgaaactaatttgatattgtaaatgttgttatattattctataaaatttatcaaactcagaaaattttgacttagtcaaagtgacttataatatggaacggagaaagtacaataaatatatgatttcattacagtgtctttcaacactaatttatacatttagtttccatgcttctaaagtaaacattttaaaattcattcatagtcaaagttcaaaataatttaaacttagccttatccaaaacaacaaattgtcgacgtttgatatcacgattccggtatttgcatagtatgggaatcgttaggtaataaccctacatcctgttggccgaagccggtattgctcttattcatcataatcacatcggtacaatattatggaattgggggagtactaggactgagagcaatgtcttaccagaaagatagttttcaaggctcccccgaggcatatactcgaagcaaagtgctctatctatggttgcaatcaaagctagtcttcctttagccagtccagttgtatgttttatttcatagcagtatccaactaaccgtataatgtttgtatggttggccatcataaggttcccaaactcattattgaatttattatcgtcaaacccttccgtgtgaagaatcttcaccgcaattttatctccatttttatgctctccctgttaagtatctagggtcagtactcaaaacatgataaaagtggtgcagggttctgtttgctttgtcgttagacttttactagaagtaagttttatttgcaacaataaaaagtggtgcatggttgattgctcacctcagtgttatatatgcaaaacatgcagtgcaggcttattcttatttagaaattagaacccactacattggtttcgccaattattacaataagttggtttacataccaaagttgactttaacttaccttataaactgttccatatccacctttaccaagctttcgctcctcagagaatccatctgtaatttcttttaacaattggtatggtacattagttggattcat
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| CDS seq | atgaatccaactaatgtaccataccaattgttaaaagaaattacagatggattctctgaggagcgaaagcttggtaaaggtggatatggaacagtttataagggagagcataaaaatggagataaaattgcggtgaagattcttcacacggaagggtttgacgataataaattcaataatgagtttgggaaccttatgatggccaaccatacaaacattatacggttagttggatactgctatgaaataaaacatacaactggactggctaaaggaagactagctttgattgcaaccatagatagagcactttgcttcgagttcatcactgaagagaaaacaatgatcacaaaaaatcttgttgggactctcccatacatgccacgagaatacatagagaggaaagaaatatcaaacaagttagacatattcagcttgggcgctacaagaaggaatggtcccttactagaagcatattgccagcaagtaaagacatgcactgagatagcactgaaatgcctggaaattgatagggaaaataggcctaatatattggaaatcatcaatcaaattaatgagaaagaagatataattggtgagaaaaccaagaacctgatcaccataatgaatcatgttccaaagagaaagaggaggaccaagaggaagatcagatcatcccaatggagcatcctgattttccaagagatgtgcatccatcagagccatgttaccgcggccaagttcatcgcgcgaaagcaatggtttgtggttggacatcaagatggtttcataagagtttacacatatgagtccccagtaaagcaagtgaagagattcaaagctcatgtatggaacatcacaactttggatgtccatccaactgagccttacctactgtcagtaggctcacaagaccagatcaagctgtgggactggaacaagggctgggagtgcattaagacatttgacctccatggcatagcatatcaaataaaatttaacccaaaagatacacataaatttgctattgcgagcttgcaggatgcacaggtttggaatatccgttcttcccgtcatgaattcacattgtctgggcacggatatatagtgagttgcttggattactttactcgaggcaatcaactgtacatgataactggttcctgggacaaaacagccaagatctgggattgccagagaaggacttgtgttcaaacacttgaaggacatacggattgcattacctgtgtttgttcccatccagatcttccagtactacttacaggttcaaatgatgagacagttcgtctgtggaactccataaccttcaagcttgagggtgtactggactttgagctcggacaagttactgctataatttgtttgaagggctcaaaacgagttgtgattggacatgatgctggattagtgattactgaaattcgccatgaaaagcctggtcccagcaacagataa
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| Protein seq | MNPTNVPYQLLKEITDGFSEERKLGKGGYGTVYKGEHKNGDKIAVKILHTEGFDDNKFNNEFGNLMMANHTNIIRLVGYCYEIKHTTGLAKGRLALIATIDRALCFEFITEEKTMITKNLVGTLPYMPREYIERKEISNKLDIFSLGATRRNGPLLEAYCQQVKTCTEIALKCLEIDRENRPNILEIINQINEKEDIIGEKTKNLITIMNHVPKRKRRTKRKIRSSQWSILIFQEMCIHQSHVTAAKFIARKQWFVVGHQDGFIRVYTYESPVKQVKRFKAHVWNITTLDVHPTEPYLLSVGSQDQIKLWDWNKGWECIKTFDLHGIAYQIKFNPKDTHKFAIASLQDAQVWNIRSSRHEFTLSGHGYIVSCLDYFTRGNQLYMITGSWDKTAKIWDCQRRTCVQTLEGHTDCITCVCSHPDLPVLLTGSNDETVRLWNSITFKLEGVLDFELGQVTAIICLKGSKRVVIGHDAGLVITEIRHEKPGPSNR |
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| Function | Coatomer subunit beta'-2 [UniProtKB/Swiss-Prot:Q6H8D5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007200 | OsLiXu_11g0007200.01 | Chr11 | 6294740 | 6302145 | - | NAM | ||
| CDS seq | atgaatccaactaatgtaccataccaattgttaaaagaaattacagatggattctctgaggagcgaaagcttggtaaaggtggatatggaacagtttataagggagagcataaaaatggagataaaattgcggtgaagattcttcacacggaagggtttgacgataataaattcaataatgagtttgggaaccttatgatggccaaccatacaaacattatacggttagttggatactgctatgaaataaaacatacaactggactggctaaaggaagactagctttgattgcaaccatagatagagcactttgcttcgagttcatcactgaagagaaaacaatgatcacaaaaaatcttgttgggactctcccatacatgccacgagaatacatagagaggaaagaaatatcaaacaagttagacatattcagcttgggcgctacaagaaggaatggtcccttactagaagcatattgccagcaagtaaagacatgcactgagatagcactgaaatgcctggaaattgatagggaaaataggcctaatatattggaaatcatcaatcaaattaatgagaaagaagatataattggtgagaaaaccaagaacctgatcaccataatgaatcatgttccaaagagaaagaggaggaccaagaggaagatcagatcatcccaatggagcatcctgattttccaagagatgtgcatccatcagagccatgttaccgcggccaagttcatcgcgcgaaagcaatggtttgtggttggacatcaagatggtttcataagagtttacacatatgagtccccagtaaagcaagtgaagagattcaaagctcatgtatggaacatcacaactttggatgtccatccaactgagccttacctactgtcagtaggctcacaagaccagatcaagctgtgggactggaacaagggctgggagtgcattaagacatttgacctccatggcatagcatatcaaataaaatttaacccaaaagatacacataaatttgctattgcgagcttgcaggatgcacaggtttggaatatccgttcttcccgtcatgaattcacattgtctgggcacggatatatagtgagttgcttggattactttactcgaggcaatcaactgtacatgataactggttcctgggacaaaacagccaagatctgggattgccagagaaggacttgtgttcaaacacttgaaggacatacggattgcattacctgtgtttgttcccatccagatcttccagtactacttacaggttcaaatgatgagacagttcgtctgtggaactccataaccttcaagcttgagggtgtactggactttgagctcggacaagttactgctataatttgtttgaagggctcaaaacgagttgtgattggacatgatgctggattagtgattactgaaattcgccatgaaaagcctggtcccagcaacagataa
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| Protein seq | MNPTNVPYQLLKEITDGFSEERKLGKGGYGTVYKGEHKNGDKIAVKILHTEGFDDNKFNNEFGNLMMANHTNIIRLVGYCYEIKHTTGLAKGRLALIATIDRALCFEFITEEKTMITKNLVGTLPYMPREYIERKEISNKLDIFSLGATRRNGPLLEAYCQQVKTCTEIALKCLEIDRENRPNILEIINQINEKEDIIGEKTKNLITIMNHVPKRKRRTKRKIRSSQWSILIFQEMCIHQSHVTAAKFIARKQWFVVGHQDGFIRVYTYESPVKQVKRFKAHVWNITTLDVHPTEPYLLSVGSQDQIKLWDWNKGWECIKTFDLHGIAYQIKFNPKDTHKFAIASLQDAQVWNIRSSRHEFTLSGHGYIVSCLDYFTRGNQLYMITGSWDKTAKIWDCQRRTCVQTLEGHTDCITCVCSHPDLPVLLTGSNDETVRLWNSITFKLEGVLDFELGQVTAIICLKGSKRVVIGHDAGLVITEIRHEKPGPSNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0213000 | SBH | 0.234043 | 0.000000 | 0.816230 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10640 | SBH | 0.606671 | 0.387054 | 0.158629 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0213000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007190 | RBH | 0.0 | 1.435141 | 0.919097 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007270 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007080 | RBH | 0.0 | 9.297534 | 2.610318 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007100 | RBH | 0.0 | 0.043554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007080 | RBH | 0.000000 | 3.567242 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0093400 | SBH | 0.193188 | 1.072584 | 0.1490385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007070 | RBH | 0.0 | 0.159632 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0100400 | SBH | 1.2949105 | 1.729072 | 0.2452115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007220 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007110 | RBH | 0.0 | 6.160782 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0064460 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007190 | RBH | 0.0 | 0.678053 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007230 | RBH | 0.0 | 1.649697 | 0.105069 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007070 | RBH | 0.0 | 13.393512 | 1.386092 |
