Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0005260 | OGI:11012880 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:4119520-4120992 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcacgaaaaagctcccacaaagcatcacctgcaaccagcccccgctcatctccatcttcctcctccctccctctctcctgtgcttcttctcttcatcaacaagagagctttccctcgatctgtgtgtgtatatatatagagagagagagggactgatctgggtgtagcgagctcggtagcctagctagcatggggaggtccccatgctgcgagaaggcgcacacgaacaagggagcctggacgaaggaggaggaccagcggctcatcgcctacatcaaggccaacggcgagggatgctggaggtcgctccccaaggccgcaggtatatacaacgtcgtacaaaatcatgctactccggccatggcgtgcatggcggcggaggtcgacggtgactgactgagtgttacctgtgtgtagggttgctgcggtgcgggaaaagctgccggctgcgatggatcaactacctgagaccggacctcaagcgaggtaatttcaccgaggaggaggacgagctcatcatcaagctccatgagcttctaggcaacaagtaagcctccatgccggccatcctgcaaagaagataaatattgtattagctatataagagatagaatcatgatccgatcatgacaacatggcgatggatgaatcgacaagcatattactgatcactgatccatcgatgtgtgtataataacatatatctatatggtgtatatgcaggtggtcactgatcgccgggaggctgccggggaggacggacaacgagatcaagaactactggaacacgcacatcaagcgcaagctcctcgcccgcggcgttgacccgcagacgcaccgcccgctcaatgccgccgccgaccaccaccagcagcagcagctccaggcgccacggcggttcgccgccgcgccagccggccaccaccaccaccaccctgaccatttcgccgtcctctccaactcgccggaggcctgcagccacagcagcgacgacgagcccagctccgccacgccgccgccgccgccgcgtcacctcggcatcgacctcaacctttccatcagcctagctccttaccagccgcaggatcagaccagcgagccgatgaagcaggaggaggacgacgaagcgtcagcgacggcgaacggcgccggcaatgcagcgatgacgacgacggcgacgacggcggcggtgtgcctgtgcttgaaccgcctcgggctccacggcggcgaggtgtgcagctgcggacgcggcggcgccccctccatgcaggccagcacacacatgtttagattcatcacgccgctaggaggaagccaccacaacagtagtagcacaacaatgacataattaattaagttgagggaggagatatatatactacttaattcgcaattaaaacccagccacacatgcttagctctttgtaatattcatcaggaaatgtgatctctttctctttttttttttattt
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| CDS seq | atggggaggtccccatgctgcgagaaggcgcacacgaacaagggagcctggacgaaggaggaggaccagcggctcatcgcctacatcaaggccaacggcgagggatgctggaggtcgctccccaaggccgcagggttgctgcggtgcgggaaaagctgccggctgcgatggatcaactacctgagaccggacctcaagcgaggtaatttcaccgaggaggaggacgagctcatcatcaagctccatgagcttctaggcaacaacatattactgatcactgatccatcgatgtgtgta |
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| Protein seq | MGRSPCCEKAHTNKGAWTKEEDQRLIAYIKANGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHELLGNNILLITDPSMCV |
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| Function | Transcription repressor MYB4 [UniProtKB/Swiss-Prot:Q9SZP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0005260 | OsLiXu_11g0005260.01 | Chr11 | 4119710 | 4120987 | + | NAM | ||
| CDS seq | atggggaggtccccatgctgcgagaaggcgcacacgaacaagggagcctggacgaaggaggaggaccagcggctcatcgcctacatcaaggccaacggcgagggatgctggaggtcgctccccaaggccgcagggttgctgcggtgcgggaaaagctgccggctgcgatggatcaactacctgagaccggacctcaagcgaggtaatttcaccgaggaggaggacgagctcatcatcaagctccatgagcttctaggcaacaacatattactgatcactgatccatcgatgtgtgta
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| Protein seq | MGRSPCCEKAHTNKGAWTKEEDQRLIAYIKANGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHELLGNNILLITDPSMCV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0005260 | OsLiXu_11g0005260.02 | Chr11 | 4119520 | 4120992 | + | IsoSeq | ||
| CDS seq | atgccgccgccgaccaccaccagcagcagcagctccaggcgccacggcggttcgccgccgcgccagccggccaccaccaccaccaccctgaccatttcgccgtcctctccaactcgccggaggcctgcagccacagcagcgacgacgagcccagctccgccacgccgccgccgccgccgcgtcacctcggcatcgacctcaacctttccatca
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| Protein seq | MPPPTTTSSSSSRRHGGSPPRQPATTTTTLTISPSSPTRRRPAATAATTSPAPPRRRRRRVTSASTSTFPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 4120067 | 4120244 | + | OsLiXu_11g0005260.01 | OsLiXu_11g0005260.02,OsLiXu_11g0005260.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.146748 | 0.0 | 1.456709 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0180900 | RBH | 1.443663 | 1.916514 | 4.574543 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0180900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005370 | RBH | 0.0 | 4.119169 | 7.058246 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005380 | RBH | 0.0 | 9.308150 | 8.674186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005230 | RBH | 0.059478 | 0.250218 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001780 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0068500 | RBH | 3.629367 | 1.08538 | 2.534217 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005230 | RBH | 0.080497 | 0.802662 | 1.679427 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0068200 | RBH | 7.8636415 | 0.8953855 | 7.3138085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005280 | RBH | 0.0 | 5.884669 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005170 | RBH | 0.0 | 0.0 | 0.813714 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005250 | RBH | 0.000000 | 3.864149 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005310 | RBH | 0.0 | 2.787216 | 4.809916 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005200 | RBH | 0.747245 | 0.000000 | 9.739234 |
