Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0001670 | OGI:11004780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:1255108-1256455 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaattaactcttttggaaaaatgaataattaacaaataatcttgatgagttacatcatgcttacatatataatcacgcctgttaattcctgttgctatctctcttattcttgtgctgacgtttgatgccagtgacacacgtacaaccggtcacacatccaaaactacaaataaaacaaatcttctagcttcaagtatagtaacaacaatagtttaacctagacatgcatctagctaattaatataaaattaattattgatgtgcacagtatacgtatcgaatgtgacagtgttttttctttcattacttgagctaattaaaacatcattgggacggagcagcaaccatcggagaggtccatgaggtcggcaacctgctccgccgccgcctcgtcgaacagccacttctcaatcgaagacagcggcgccgccgcctggttcatcagctgctgcttgctctcgtcgccgtagccgccgccatagccgccgtactccataaacgacgacgccggctgctgctgatgaacgtcgaagcagcagtccaggtcggcgccggacatgcagtcgaaggacgacagcaaggggttgccgacgacatcgacggcgggcttgacgtcgtcgtaatagccgccgtcatagtgctgcagcggcggcggcggcggcgacggcgagttggtcttcatgaagccgtcgagcagcttggagatgttgtccatgctggaggcgtaggaggaggatgggcagtcggcgaagggggagcgcctagcaatggctgccatctggttgacatcggagttgctgctcaccgtgtggctgccggcggcggaggggaaggtggcgtcggcgaagatggggtggcggttggaggctgctgaagtggagttggcggcggcggcgagcttcttcttgaggtgggtgttccagtagttcttgatgtcgttgtcggtgcgctgggggaggtaggaggcgatggcggcccagcggttgccgagcagcgactggaggtggacgatgatcccctcctcgtgcgccgtgaagttgccgcgctttatccccggccgcaggtagttcgtccaccgcagcctgcagctcttgctgcacctcatcagccctgcatccatccatccacccacacaacttcagcttcttctcagttcattatcgatcaccatggctaagcttcatctgcaaagaattggggaattaggatgtacctgtgttgatgggaaccgatctccagttgccggggccgtgttcttggatgtaggagacgaggatgatgtcctcctcgggcgtccatggccccttcttgatcccctccttgtcgcagcacggcggccgtcccat
More
|
||||||||||
| CDS seq | atgggacggccgccgtgctgcgacaaggaggggatcaagaaggggccatggacgcccgaggaggacatcatcctcgtctcctacatccaagaacacggccccggcaactggagatcggttcccatcaacacagggctgatgaggtgcagcaagagctgcaggctgcggtggacgaactacctgcggccggggataaagcgcggcaacttcacggcgcacgaggaggggatcatcgtccacctccagtcgctgctcggcaaccgctgggccgccatcgcctcctacctcccccagcgcaccgacaacgacatcaagaactactggaacacccacctcaagaagaagctcgccgccgccgccaactccacttcagcagcctccaaccgccaccccatcttcgccgacgccaccttcccctccgccgccggcagccacacggtgagcagcaactccgatgtcaaccagatggcagccattgctaggcgctcccccttcgccgactgcccatcctcctcctacgcctccagcatggacaacatctccaagctgctcgacggcttcatgaagaccaactcgccgtcgccgccgccgccgccgctgcagcactatgacggcggctattacgacgacgtcaagcccgccgtcgatgtcgtcggcaaccccttgctgtcgtccttcgactgcatgtccggcgccgacctggactgctgcttcgacgttcatcagcagcagccggcgtcgtcgtttatggagtacggcggctatggcggcggctacggcgacgagagcaagcagcagctgatgaaccaggcggcggcgccgctgtcttcgattgagaagtggctgttcgacgaggcggcggcggagcaggttgccgacctcatggacctctccgatggttgctgctccgtcccaatgatgttttaa
More
|
||||||||||
| Protein seq | MGRPPCCDKEGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIKRGNFTAHEEGIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLAAAANSTSAASNRHPIFADATFPSAAGSHTVSSNSDVNQMAAIARRSPFADCPSSSYASSMDNISKLLDGFMKTNSPSPPPPPLQHYDGGYYDDVKPAVDVVGNPLLSSFDCMSGADLDCCFDVHQQQPASSFMEYGGYGGGYGDESKQQLMNQAAAPLSSIEKWLFDEAAAEQVADLMDLSDGCCSVPMMF |
||||||||||
| Function | Transcription factor MYB60 [UniProtKB/Swiss-Prot:B3VTV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0001670 | OsLima_11g0001670.01 | Chr11 | 1255108 | 1256455 | - | NAM | ||
| CDS seq | atgggacggccgccgtgctgcgacaaggaggggatcaagaaggggccatggacgcccgaggaggacatcatcctcgtctcctacatccaagaacacggccccggcaactggagatcggttcccatcaacacagggctgatgaggtgcagcaagagctgcaggctgcggtggacgaactacctgcggccggggataaagcgcggcaacttcacggcgcacgaggaggggatcatcgtccacctccagtcgctgctcggcaaccgctgggccgccatcgcctcctacctcccccagcgcaccgacaacgacatcaagaactactggaacacccacctcaagaagaagctcgccgccgccgccaactccacttcagcagcctccaaccgccaccccatcttcgccgacgccaccttcccctccgccgccggcagccacacggtgagcagcaactccgatgtcaaccagatggcagccattgctaggcgctcccccttcgccgactgcccatcctcctcctacgcctccagcatggacaacatctccaagctgctcgacggcttcatgaagaccaactcgccgtcgccgccgccgccgccgctgcagcactatgacggcggctattacgacgacgtcaagcccgccgtcgatgtcgtcggcaaccccttgctgtcgtccttcgactgcatgtccggcgccgacctggactgctgcttcgacgttcatcagcagcagccggcgtcgtcgtttatggagtacggcggctatggcggcggctacggcgacgagagcaagcagcagctgatgaaccaggcggcggcgccgctgtcttcgattgagaagtggctgttcgacgaggcggcggcggagcaggttgccgacctcatggacctctccgatggttgctgctccgtcccaatgatgttttaa
More
|
|||||||
| Protein seq | MGRPPCCDKEGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIKRGNFTAHEEGIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLAAAANSTSAASNRHPIFADATFPSAAGSHTVSSNSDVNQMAAIARRSPFADCPSSSYASSMDNISKLLDGFMKTNSPSPPPPPLQHYDGGYYDDVKPAVDVVGNPLLSSFDCMSGADLDCCFDVHQQQPASSFMEYGGYGGGYGDESKQQLMNQAAAPLSSIEKWLFDEAAAEQVADLMDLSDGCCSVPMMF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0128500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0128500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001850 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001780 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0026400 | RBH | 2.3321425 | 0.2181035 | 0.7323005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0025400 | RBH | 2.378899 | 0 | 0.18945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001650 | RBH | 0.0 | 0.051196 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001750 | RBH | 0.0 | 0.0 | 0.0 |
