Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0015630 | OGI:10058740 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:21073308-21077411 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tactgctcaacaatggcacatattaatggggattgcaggcgcgtggcctgtatatatcatattcaacattattaatacggaccaaatgatacaggctattgtctaaccaacctgacaccaatcgatattacaccacctcactttgtaagcagtacaccataaaacgtaattcacatatgcgcagtctgaagaaaaataaaaagaggcacacaaacatgttctgccacatcccaaaaccatctctcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacggtggctgaggatatggcggctgtggctgcggctggggctgatgtggattgtagtactgcccgcgccatcctccaggatatgcttgttggccatagtcatggttgggaggttgctggtgtggtggctgttggtagtgaccagggtggggcgcgccataaggaggctgttgcgacggcgcaccatatggaggctgttgcggtggcgcgccatagggcgggtatggctgtgagtaagcaggtctttgctcgggctgagagtacacgggtctcgaatcgcctgcgggtggaacaccatatgggccctgagcatggggagcatgcgacgacggtggtggtggtgatggactgttctgatctggtggcacagaagtgttcctctgcatgcttgcttggctggaagaagatgagaagctgaaacctgctagcttcttctgcacatcttcgatcatttcacggcattgaatgtttcgggtcattatgaagtcactgcactgctgctttattttgccaattgcttcctgcacaaaaggaccatttcaggatataaatacatacacagtggtcctcctacatacaatggtaactgtcatcatatatatcctaactacagtagaaacagaatgcaacagagacacgcatttacctgtaatgtcacataaaaattgaggccttcattaatgttcttcttaatatctcggtatttagcaacagccgcagcaatttgcttgtaacatctctcacgagcaactgaaaacatgcttcacaaatcaggcctacacagctcattgcttacaaaccgggatacatacttaaaaacactgattgtggtactatttacatgataaaatgattgtaagttagaattaaagagaccaagttccagcatcaatggttcttcatatcttaaattgaactagaactaggaggaaaaaatgtattcaacgaagaaaaataattgaatggttaacagagaaaaacacatgcatacaaacaacacaacattctgttgttttagctagcagacaatttgatgactaggtatgtgtatatataagttcccaaccttattggtaagtgtaacacaaataattatcccacatccaaatcagtagttgctaccaagaatgggcaaaaatccagctatcaaagtcactaagcgcacgatataatccattgatgaataaatcagaagggatacctttgtaatcctctaggttgaacaccgcagcaaactgttcattttgtgcctgtgcagaaatccaaaatataaatagtgttagacataaggacgaaagaacatgaaatacagtatacttaactcttcaaaatattttctggttgttctttctttgctaataccaactaaatcattgatgctattagacgtttaaaattttcaacataattacattttttgggggatgtctatctagattttagcagaaaggtgtttacattgaacttctagaataagagaattgcaaaggtggactatatcaatctttatcaggaatggtggcttacctgtatttgtagcagcagttgttcttgcgccacaatgttatcagctatctcagcacagacaggatcatactttgaaatctccttcttaaaaagatcatcgtgtgatccaacaccggccatcaatttagggagtatgtcatcctgatagaaatatttgtatgtcataattcctgattgactctgctcaaatccctaagctgctgcaactccgcttccaatccagcagggcctccgcttatctgaacagcctcaacgtcttccttcaaatctaaaggtaaggtgatattaccttccaatgaaagaatggaatcgggcaagtccatttccttcaacctaactctagtgatctcactagcttgctgtaatttctccgcttgaatcctgatgatgttatctaccatctcagtgtacttggaaagtgctttcatgcttccatcaggcacaagtgatgaaaaaagcctctctttgctagcatctagaacttcagccaaagatgtaggctttacaagtgatgctgcagggagcgagccaagagaactagcatccggaaccctcatcaggtaaacacggtcattctctttcatagccctctccaagttggtcttcatattactctccagcttattaacagaatcaagaagtggggcagcaactcccctggccaccttcttggcatctgccaaagcgctaattccaatcttcagacgtgcaatttcctgtgcaatttcttctttctcgtgaagatccaaagaacacctatagcaagcatcagcatagaactgagctgccttcagctggacatgagaaacccatgtcttatcaaagtgttgactgagaggagctgcgctaagagctgcataggcttcttcatagaatatgcccacctgaaaaagggacatccacaaatcaatccaatagcacatctgacaccaatattacaaaaaggtgaagaaatatttgtatcttgaatgtttgtaaaagcagtaaacccagcaaattgtactttatttaatcaaataaactgcaagacctaatctagcttctatttaccaccaggagagacacatgaatgctaccaaatcaatcatattgtaaccagtcagtttcatttaaaatatgatcactccatgggatgatgccacaactcaagtttatcatgctatcaagagagacttcatgcccaatggttcaccaatcaccatagcaaagtccaattattattatcaacactaaagatagcatctaaaggagcacttatctaggcaagttcccaaaactacaagttgctatgtcaagtcacctgtggatggtaattacagacagtatccccatcaaacgactccacaaaaagcattccaaaatactagccacaacaatcgaaataagctcccttactacattattatcagctcatatcatcgaaataacctgaacaagaggaggcagcgcaagaagagcctcacctgccgggcaaccttggagcacagcgcgggcggcttcccaccggctatcaccttctcgaagaagcactcctgcgcctgcgcgagcatgagcttctccagcatggcagcgcactcgggggtgacgtcgacggtggtggccccggccgcgacggccttggcggcgacgccgctctccctcatccacgcgaacgcccccgccgcgctctggaacgagccgcacgcggtcctgatcccgacgtcggtggcccggtccgcggcgagcgcgatctgggagtagacggcggcgaggttgaagagcacggcggccttctcgaggtggatggaggcgacgctggccttcttgccggtcttgaaggcgtcgtgccaggtgaaggcgagggagtggacgtgggcgcggtcgggggagatggggaagcggggctccacgagggacagggcgcgcgcgtaggcgaggagcgcgtcccgcctccgctcgagggaggacgggtccgggagcgacggctgctcgacgtcggcgcgcaggtcgcgcaccgcggcgaggtcgtcgtcggccgcggccgcctcccgctccgagtaggcggaggcgatgtagaggcggagcgggcggtagaggtcggtgggggtggtcctcttctcgtggatcgccagcatcacgttctccgccgacgacatggcggccgccggagggaagagatcggggcggcggcggtggagtgcttcgcggcgaaggaaaaaaaaaaAgaggagaaaaaaattgggggaagttggaagccgtcgcggtaggacttaggagtagtcagtcgtcttgtgttgtgt
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| CDS seq | atgtcgtcggcggagaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccgcccgctccgcctctacatcgcctccgcctactcggagcgggaggcggccgcggccgacgacgacctcgccgcggtgcgcgacctgcgcgccgacgtcgagcagccgtcgctcccggacccgtcctccctcgagcggaggcgggacgcgctcctcgcctacgcgcgcgccctgtccctcgtggagccccgcttccccatctcccccgaccgcgcccacgtccactccctcgccttcacctggcacgacgccttcaagaccggcaagaaggccagcgtcgcctccatccacctcgagaaggccgccgtgctcttcaacctcgccgccgtctactcccagatcgcgctcgccgcggaccgggccaccgacgtcgggatcaggaccgcgtgcggctcgttccagagcgcggcgggggcgttcgcgtggatgagggagagcggcgtcgccgccaaggccgtcgcggccggggccaccaccgtcgacgtcacccccgagtgcgctgccatgctggagaagctcatgctcgcgcaggcgcaggagtgcttcttcgagaaggtgatagccggtgggaagccgcccgcgctgtgctccaaggttgcccggcaggtgggcatattctatgaagaagcctatgcagctcttagcgcagctcctctcagtcaacactttgataagacatgggtttctcatgtccagctgaaggcagctcagttctatgctgatgcttgctataggtgttctttggatcttcacgagaaagaagaaattgcacaggaaattgcacgtctgaagattggaattagcgctttggcagatgccaagaaggtggccaggggagttgctgccccacttcttgattctgttaataagctggagagtaatatgaagaccaacttggagagggctatgaaagagaatgaccgtgtttacctgatgagggttccggatgctagttctcttggctcgctccctgcagcatcacttgtaaagcctacatctttggctgaagttctagatgctagcaaagagaggcttttttcatcacttgtgcctgatggaagcatgaaagcactttccaagtacactgagatggtagataacatcatcaggattcaagcggagaaattacagcaagctagtgagatcactagagttaggttgaaggaaatggacttgcccgattccattctttcattggaaggtaatatcaccttacctttagatttgaaggaagacgttgaggctgttcagataagcggaggccctgctggattggaagcggagttgcagcagcttagggatttgagcagagatgacatactccctaaattgatggccggtgttggatcacacgatgatctttttaagaaggagatttcaaagtatgatcctgtctgtgctgagatagctgataacattgtggcgcaagaacaactgctgctacaaatacaggcacaaaatgaacagtttgctgcggtgttcaacctagaggattacaaagttgctcgtgagagatgttacaagcaaattgctgcggctgttgctaaataccgagatattaagaagaacattaatgaaggcctcaatttttatgtgacattacaggaagcaattggcaaaataaagcagcagtgcagtgacttcataatgacccgaaacattcaatgccgtgaaatgatcgaagatgtgcagaagaagctagcaggtttcagcttctcatcttcttccagccaagcaagcatgcagaggaacacttctgtgccaccagatcagaacagtccatcaccaccaccaccgtcgtcgcatgctccccatgctcagggcccatatggtgttccacccgcaggcgattcgagacccgtgtactctcagcccgagcaaagacctgcttactcacagccatacccgccctatggcgcgccaccgcaacagcctccatatggtgcgccgtcgcaacagcctccttatggcgcgccccaccctggtcactaccaacagccaccacaccagcaacctcccaaccatgactatggccaacaagcatatcctggaggatggcgcgggcagtactacaatccacatcagccccagccgcagccacagccgccatatcctcagccaccgtacaatgcccagggttcttaccctcctcaccagagcagctactacaggcctcaatga
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| Protein seq | MSSAENVMLAIHEKRTTPTDLYRPLRLYIASAYSEREAAAADDDLAAVRDLRADVEQPSLPDPSSLERRRDALLAYARALSLVEPRFPISPDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAVLFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGVAAKAVAAGATTVDVTPECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHFDKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAPLLDSVNKLESNMKTNLERAMKENDRVYLMRVPDASSLGSLPAASLVKPTSLAEVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRIQAEKLQQASEITRVRLKEMDLPDSILSLEGNITLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRDDILPKLMAGVGSHDDLFKKEISKYDPVCAEIADNIVAQEQLLLQIQAQNEQFAAVFNLEDYKVARERCYKQIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLAGFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPAGDSRPVYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ |
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| Function | Vacuolar-sorting protein BRO1 [UniProtKB/Swiss-Prot:F4HXZ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0015630 | OsLiXu_10g0015630.01 | Chr10 | 21073308 | 21077267 | - | NAM | ||
| CDS seq | atgtcgtcggcggagaacgtgatgctggcgatccacgagaagaggaccacccccaccgacctctaccgcccgctccgcctctacatcgcctccgcctactcggagcgggaggcggccgcggccgacgacgacctcgccgcggtgcgcgacctgcgcgccgacgtcgagcagccgtcgctcccggacccgtcctccctcgagcggaggcgggacgcgctcctcgcctacgcgcgcgccctgtccctcgtggagccccgcttccccatctcccccgaccgcgcccacgtccactccctcgccttcacctggcacgacgccttcaagaccggcaagaaggccagcgtcgcctccatccacctcgagaaggccgccgtgctcttcaacctcgccgccgtctactcccagatcgcgctcgccgcggaccgggccaccgacgtcgggatcaggaccgcgtgcggctcgttccagagcgcggcgggggcgttcgcgtggatgagggagagcggcgtcgccgccaaggccgtcgcggccggggccaccaccgtcgacgtcacccccgagtgcgctgccatgctggagaagctcatgctcgcgcaggcgcaggagtgcttcttcgagaaggtgatagccggtgggaagccgcccgcgctgtgctccaaggttgcccggcaggtgggcatattctatgaagaagcctatgcagctcttagcgcagctcctctcagtcaacactttgataagacatgggtttctcatgtccagctgaaggcagctcagttctatgctgatgcttgctataggtgttctttggatcttcacgagaaagaagaaattgcacaggaaattgcacgtctgaagattggaattagcgctttggcagatgccaagaaggtggccaggggagttgctgccccacttcttgattctgttaataagctggagagtaatatgaagaccaacttggagagggctatgaaagagaatgaccgtgtttacctgatgagggttccggatgctagttctcttggctcgctccctgcagcatcacttgtaaagcctacatctttggctgaagttctagatgctagcaaagagaggcttttttcatcacttgtgcctgatggaagcatgaaagcactttccaagtacactgagatggtagataacatcatcaggattcaagcggagaaattacagcaagctagtgagatcactagagttaggttgaaggaaatggacttgcccgattccattctttcattggaaggtaatatcaccttacctttagatttgaaggaagacgttgaggctgttcagataagcggaggccctgctggattggaagcggagttgcagcagcttagggatttgagcagagatgacatactccctaaattgatggccggtgttggatcacacgatgatctttttaagaaggagatttcaaagtatgatcctgtctgtgctgagatagctgataacattgtggcgcaagaacaactgctgctacaaatacaggcacaaaatgaacagtttgctgcggtgttcaacctagaggattacaaagttgctcgtgagagatgttacaagcaaattgctgcggctgttgctaaataccgagatattaagaagaacattaatgaaggcctcaatttttatgtgacattacaggaagcaattggcaaaataaagcagcagtgcagtgacttcataatgacccgaaacattcaatgccgtgaaatgatcgaagatgtgcagaagaagctagcaggtttcagcttctcatcttcttccagccaagcaagcatgcagaggaacacttctgtgccaccagatcagaacagtccatcaccaccaccaccgtcgtcgcatgctccccatgctcagggcccatatggtgttccacccgcaggcgattcgagacccgtgtactctcagcccgagcaaagacctgcttactcacagccatacccgccctatggcgcgccaccgcaacagcctccatatggtgcgccgtcgcaacagcctccttatggcgcgccccaccctggtcactaccaacagccaccacaccagcaacctcccaaccatgactatggccaacaagcatatcctggaggatggcgcgggcagtactacaatccacatcagccccagccgcagccacagccgccatatcctcagccaccgtacaatgcccagggttcttaccctcctcaccagagcagctactacaggcctcaatga
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| Protein seq | MSSAENVMLAIHEKRTTPTDLYRPLRLYIASAYSEREAAAADDDLAAVRDLRADVEQPSLPDPSSLERRRDALLAYARALSLVEPRFPISPDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAVLFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGVAAKAVAAGATTVDVTPECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHFDKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAPLLDSVNKLESNMKTNLERAMKENDRVYLMRVPDASSLGSLPAASLVKPTSLAEVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRIQAEKLQQASEITRVRLKEMDLPDSILSLEGNITLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRDDILPKLMAGVGSHDDLFKKEISKYDPVCAEIADNIVAQEQLLLQIQAQNEQFAAVFNLEDYKVARERCYKQIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLAGFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPAGDSRPVYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0015630 | OsLiXu_10g0015630.02 | Chr10 | 21073323 | 21077411 | - | IsoSeq | ||
| CDS seq | atggcgcgggcagtactacaatccacatcagccccagccgcagccacagccgccatatcctcagccaccgtacaatgcccagggttcttaccctcctcaccagagcagctactacaggcctcaatgagagatggttttgggatgtggcagaacatgtttgtgtgcctctttttatttttcttcagactgcgcatatgtgaattacgttttatggtgtactgcttacaaagtgaggtg
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| Protein seq | MARAVLQSTSAPAAATAAISSATVQCPGFLPSSPEQLLQASMRDGFGMWQNMFVCLFLFFFRLRICELRFMVYCLQSEV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr10 | 21075133 | 21076016 | - | OsLiXu_10g0015630.02 | OsLiXu_10g0015630.01,OsLiXu_10g0015630.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.530142 | 0.0 | 0.641197 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495300 | SBH | 5.270146 | 4.824523 | 8.651000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35250 | SBH | 3.181582 | 3.208194 | 1.901574 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015900 | SBH | 1.117433 | 32.062157 | 11.842493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016140 | SBH | 0.678988 | 5.287590 | 4.796975 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015530 | SBH | 3.576445 | 25.257742 | 18.705879 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015990 | SBH | 0.382705 | 0.601276 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015850 | SBH | 4.296103 | 7.068888 | 13.941843 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0312100 | SBH | 3.0069495 | 6.878474 | 7.921598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015770 | SBH | 0.368815 | 1.579967 | 2.365788 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334800 | SBH | 5.8412195 | 12.767868 | 7.453612 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015530 | SBH | 0.344247 | 0.815465 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015410 | SBH | 1.442015 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015890 | RBH | 0.000000 | 14.200282 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015580 | SBH | 0.506818 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016070 | SBH | 0.578282 | 13.072300 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015680 | SBH | 0.850003 | 7.220153 | 4.076895 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015810 | SBH | 0.000000 | 7.588170 | 1.864378 |
