Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_10g0495300 OGI:10058740 | 15/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr10:18837746-18843204
Gene Symbol -
DNA seq

ACTGCTCAACAATGGCACATATTAATGGGGATTGCAGGCGCGTGGCCTGTATATATCATATTCAACATTATTAATACGGACCAAATGATACAGGCTATTGTCTAACCAACCTGACACCAATCGATATTACACCACCTCACTTTGTAAGCAGTACACCATAAAACGTAATTCACATATGCGCAGTCTGAAGAAAAATAAAAAGAGGCACACAAACATGTTCTGCCACATCCCAAAACCATCTCTCATTGAGGCCTGTAGTAGCTGCTCTGGTGAGGAGGGTAAGAACCCTGGGCATTGTACGGTGGCTGAGGATATGGCGGCTGTGGCTGCGGCTGTGGCTGATGTGGATTGTAGTACTGCCCGCGCCATCCTCCAGGATATGCTTGTTGGCCATAGTCATGGTTGGGAGGTTGCTGGTGTGGTGGCTGTTGGTAGTGACCAGGGTGGGGCGCGCCATAAGGTGGCTGTTGCGACGGCGCACCATATGGAGGCTGTTGCGGTGGCGCGCCATAGGGCGGGTATGGCTGTGAGTAAGCAGGTCTTTGCTCGGGCTGAGAGTACCCGGGTCTTGAATCGCCTCCGGGTGGAACACCATATGGGCCCTGAGCATGGGGAGCATGCGACGACGGTGGTGGTGGTGATGGACTGTTCTGATCTGGTGGCACAGAAGTATTCCTCTGCATGCTTGCTTGGCTGGAAGAAGATGAGAAGCTGAAACCTGCTAGCTTCTTCTGCACATCTTCGATCATTTCACGGCATTGAATGTTTCGGGTCATTATGAAGTCACTGCACTGCTGCTTTATTTTGCCAATTGCTTCCTGCACAAAAGGACCATTTCAGGATATAAATACATATACAGTGGTCCTCCTACATACAATGGTAACTGTCATCATATATATCCTAACTACAGTAGAAACAGAGACGCGCATTTACCTGTAATGTCACATAAAAATTGAGGCCTTCATTAATGTTCTTCTTAATATCTCGGTATTTAGCAACAGCCGCAGCAATTTGCTTGTAACATCTCTCACGAGCAACTGAAAACATGCTTCACAAATCAGGCCTACACAGCTCATTGCTTACAAACCAGGATACATACTTAAAAACACTGATTGTGGTACTATTTACATGATAAAATAATTGTAAATTAGAATTAAAGAGACCAAGTTCCAGCATCAATGGTTCTTCATATCTTAAATTGAACTAGAACTAGGAGGAGAAAATGTATTCAACGAAGAAACATAATTGAATGGTTAACAGAGAAAAACACATGCATACAAACAACACAGCATTCTGTTGTTTTAGCTAGCAGACAATTTGATGACTAGGTATGTGTATATATAAGTTCCCAACCTTATTGGTAAGTGTAACAGAAATAATTATCCCACATCCAAATCATTAGTTGCTACCTAAGAATGGGCAAAAATCCAGCTATCAAAGTCACTAAGCGCACAATATAATCCATTGATGAATAAATCAGAAGGGATACCTTTGTAATCCTCTAGGTTGAACACCGCAGCAAACTGTTCATTTTGTGCCTGTGCAGAAATCCAAAATATAAATAGTGTTAGACATAAGGACGAAAGAACATGAAATACAGTATAGTTAACTCTTCAAAATATTTTCTGGTTGTTCTTTCTTTGCTAATACCAACTAAACCATTGATGCTATTAGACGTTTAAAAATTTCAATATAATTACATTTTTTGGGGGATGTCTATCTAGATTTTAGCAGAAAGGTGTTTACATTGAACTTCTAGAATAAGAGAATTGCAAAGGTGGACTATATCAATCTTTATCAGGAATGGTGGCTTACCTGTATTTGTAGCAGCAGTTGTTCTTGCGCCACAATGTTATCAGCTATCTCAGCACAGACAGGATCATACTTTGAAATCTCCTTCTTAAAAAGATCATCGTGTGATCCAACACCGGCCATCAATTTAGGGAGTATGTCATCCTGATAGAAATATTTGTATGTCATAATTCTAAATGAACATGATGGCATCACAGGTTATATGTGTCACTATCAGTCATGAATACAGATATTGAATTCGACCGTTACAAGGTGCCAAGGACAAACAAACTTTGAAAAGAAAATGCAAGACCTCCCTGAAAACTTGTCAAGTGGAAGTTAAACGGAGAGCACATGTATAGCTTTTAATTGGTTCCTAGCAGGTTATCACATACACGTACAAGCATAGGACTCCAAGAACACCACATATCAGGCATGAACATGATCCATCCATAGTGAAGATCAATGGGCAACTGGTTGTAAACTAATTTTATTGCCAGTAAAATGCAGTAAAAAATAATGAGTAACACTTCAGGAGATAGGTCCATACAAAGGAGAGAGGGGGGGGGGGGATGAAGCGATCGCAAGAAGACTAGGTTCAAATGTAAAAAAAAAAAGAGTGATGCTATTTGTGGAAGGGCTTGTGAGCCCTTGGTTGCATGGCTGGTTTTTTTCCTTCTTAATGAAATAAAGCAGCTCTCCTGCATTCTAAAAAAAAAGTAAAAACATGGATATTTCCCTAGTATGCACATACGACCAAATGTAGAAGAATCAGAATATTTGCATGAGCTTTTAAACATAAAACAAAAGTCAACTACATGATTATCAACAAGCTAATACTGAACAAAAGAAATTCCTAATCTGTCATAACATATGTCTGGGACTTATAGTAGTTTATGTACACGATATCAAAATAAGCAATAAAAGATAGTACCTTTCTCTTCATTTCTTTAAGCATGTCTTCAAGACCTGCTCTCTGTGCTCCTAGAGATTCTAGTTGCCTCTGTAAAAGCACATCAAATTGGTTTTTAAGTTTTAAAACAAGTGAAGCTTTACATCAAACTTGCCAGCTAACAAAAACAATGTAGATTACCAAGCTTTGTTTAAGGGCTCCAACAATAGCATCCTCATTCCCATCCAAGGACATAATAGGCCTAGAAATACTCGGTAGTGCAGACTCTATCTGCAATATATAATAGCAATATGTAACAGACCAAATATGAAAAAAAAAAGAGTGTAGGATTGAATAACATCATTGAAATTCATAATGAAGCATATCAAGAAAGACAAGTTGAAGAAAAAAAAAACAAGAACACTATCTAGTATAATGTATTTTTAACTCTCACCGGTCTTCTGTCAAGAATAGATATCAATGGATAGCTCTCCTTCAAACCTCGCTCAATCTGAGAATCACTATCACCAGCTGTCTTAAGATTAGAAGCAAACAGATTCAATCGGTCTTGAATGTTTTTTGTTAGGGTGCTAGATTGAGGTCTAGTCCAACGACTCCCGAATTGCGTCCGAAACTGAGCATCTTCATTCGCCTCCTTCTGCAGCATCTCTTCGGTCTGAACAAGTAATTCCTGATTGACTCTGCTTAAATCCCTAAGCTGCTGCAACTCCGCTTCCAATCCAGCAGGGCCTCCGCTTATCTGAACAGCCTCAACGTCTTCCTTCAAATCTAAAGGTAAGGTGATATTACCTTCTAATGAAAGAATGGAATCGGGCAAGTCCATTTCCTTCAACCTAACTCTAGTGATCTCACTAGCTTGCTGTAATTTCTCCGCTTGAGTCCTGATGATGTTATCTACCATCTCAGTGTACTTGGAAAGTGCTTTCATGCTTCCATCAGGCACAAGTGATGAAAAAAGCCTCTCTTTGCTAGCATCTAGAACTTCAGCCAAAGATGTAGGCTTTACAAGTGATGCTGCAGGGAGCGCGCCAAGAGAACTAGCATCCGGAACCCTCATCAGATAAACACGGTCATTCTCTTTCATAGCCCTCTCCAAGTTGGTCTTCATATTACTCTCCAGCTTATTAACAGAATCAAGAAGTGGGGCAGCAACTCCCCTGGCCACCTTCTTGGCATCTGCCAAAGCGCTAATTCCAATCTTCAGACGTGCAATTTCCTGTGCAATTTCTTCTTTCTCGTGAAGATCCAAAGAACACCTATAGCAAGCATCAGCATAGAACTGAGCTGCCTTCAGCTGGACATGAGAAACCCATGTCTTATCAAAGTGCTGACTGAGAGGAGCTGCGCTAAGAGCTGCATAGGCTTCTTCATAGAATATGCCCACCTGAAAAAGGGACATCCACAAATCAATCCAATAGCACATCTGACACCAATATTACAAAAAGGTGAAGAAATATTTGTATCTTGAATGTTTGTAAAAGCAGTAAACCCTGCAAATTGTACTTTATTTAATCAAATAAACTGCAAGACCTAATCTAGCTTCTATTTACCACCAGGAGAGACACATGAATGCTACCAAATCAATCATATTGTAACCAGTCAGTTTCATTTAAAATATGATCACTCCATGGGATGATGCCACAACTCAAGTTTATCATGCTATCAAGACAGACTTCATGCCCAATGGTTCACCAATCACCATAGCAAAGTCCAATTATTATTATCAACACTAAAGATAGCATCTAAAGGAGCACTTATTTAGACAAATTCCCAAAACTACAAGTTGCTATGTTAAGTCACCTGTGGATGGTAATTACAGACAGTATCCCCATCAAACGACTCCACAAAAAGCATTCCAAAATACTAGCCACATAAATCGAAATAAGCTCCCTCACTACATTATTATCAGCTCATATCATCGAAATAACCTGAACAAGAGGAGGCAGAGCAAGAAGAGGCTCACCTGCCGGGCAACCTTGGAGCACAGCGCGGGCGGCTTCCCACCGGCTATCACCTTCTCGAAGAAGCACTCCTGCGCCTGCGCGAGCATGAGCTTCTCCAGCATGGCGGCGCACTCGGGGGTGACGTCGACGGTGGTGGCCCCGGCCGCGACGGCCTTGGCGGCGACGCCGCTCTCCCTCATCCACGCGAACGCCCCCGCCGCGCTCTGGAACGAGCCGCACGCGGTCCTGATCCCGACGTCGGTGGCCCGGTCCGCGGCGAGCGCGATCTGGGAGTAGACGGCGGCGAGGTTGAAGAGCACGGCGGCCTTCTCGAGGTGGATGGAGGCGACGCTGGCCTTCTTGCCGGTCTTGAAGGCGTCGTGCCAGGTGAAGGCGAGGGAGTGGACGTGGGCGCGGTCGGAGGAGATGGGGAAGCGGGGCTCGACGAGGGACAGGGCGCGCGCGTAGGCGAGGAGCGCGTCCCGCCTTCGCTCGAGGGAGGACGGGTCCGGGAGCGACGGCTGCTCGACGTCGGCGCGCAGGTCGCGCACCGCGGCGAGGTCGTCGTCGGCCGCGGCCGCCTCCCGCTCCGAGTAGGCGGAGGCGATGTAGAGGCGGAGCGGGCGGTAGAGGTCGGTGGGGGTGGTCCTCTTCTCGTGGATCGCCAGCATCACGTTCGCCGCCGACGACATGGCGGCCGCCGGAGGAAGAGATCGGGGGCGGCGGCGGCGGTGGAGTGCTTCGCGGCGAAGGAAAGGAAGAAAAAAAAAAGAGAGAAAAATTGGGGGAAGTTGGAAGCCGTCCACAGGAGT

More
CDS seq

ATGTCGTCGGCGGCGAACGTGATGCTGGCGATCCACGAGAAGAGGACCACCCCCACCGACCTCTACCGCCCGCTCCGCCTCTACATCGCCTCCGCCTACTCGGAGCGGGAGGCGGCCGCGGCCGACGACGACCTCGCCGCGGTGCGCGACCTGCGCGCCGACGTCGAGCAGCCGTCGCTCCCGGACCCGTCCTCCCTCGAGCGAAGGCGGGACGCGCTCCTCGCCTACGCGCGCGCCCTGTCCCTCGTCGAGCCCCGCTTCCCCATCTCCTCCGACCGCGCCCACGTCCACTCCCTCGCCTTCACCTGGCACGACGCCTTCAAGACCGGCAAGAAGGCCAGCGTCGCCTCCATCCACCTCGAGAAGGCCGCCGTGCTCTTCAACCTCGCCGCCGTCTACTCCCAGATCGCGCTCGCCGCGGACCGGGCCACCGACGTCGGGATCAGGACCGCGTGCGGCTCGTTCCAGAGCGCGGCGGGGGCGTTCGCGTGGATGAGGGAGAGCGGCGTCGCCGCCAAGGCCGTCGCGGCCGGGGCCACCACCGTCGACGTCACCCCCGAGTGCGCCGCCATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAGGAGTGCTTCTTCGAGAAGGTGATAGCCGGTGGGAAGCCGCCCGCGCTGTGCTCCAAGGTTGCCCGGCAGGTGGGCATATTCTATGAAGAAGCCTATGCAGCTCTTAGCGCAGCTCCTCTCAGTCAGCACTTTGATAAGACATGGGTTTCTCATGTCCAGCTGAAGGCAGCTCAGTTCTATGCTGATGCTTGCTATAGGTGTTCTTTGGATCTTCACGAGAAAGAAGAAATTGCACAGGAAATTGCACGTCTGAAGATTGGAATTAGCGCTTTGGCAGATGCCAAGAAGGTGGCCAGGGGAGTTGCTGCCCCACTTCTTGATTCTGTTAATAAGCTGGAGAGTAATATGAAGACCAACTTGGAGAGGGCTATGAAAGAGAATGACCGTGTTTATCTGATGAGGGTTCCGGATGCTAGTTCTCTTGGCGCGCTCCCTGCAGCATCACTTGTAAAGCCTACATCTTTGGCTGAAGTTCTAGATGCTAGCAAAGAGAGGCTTTTTTCATCACTTGTGCCTGATGGAAGCATGAAAGCACTTTCCAAGTACACTGAGATGGTAGATAACATCATCAGGACTCAAGCGGAGAAATTACAGCAAGCTAGTGAGATCACTAGAGTTAGGTTGAAGGAAATGGACTTGCCCGATTCCATTCTTTCATTAGAAGGTAATATCACCTTACCTTTAGATTTGAAGGAAGACGTTGAGGCTGTTCAGATAAGCGGAGGCCCTGCTGGATTGGAAGCGGAGTTGCAGCAGCTTAGGGATTTAAGCAGAGTCAATCAGGAATTACTTGTTCAGACCGAAGAGATGCTGCAGAAGGAGGCGAATGAAGATGCTCAGTTTCGGACGCAATTCGGGAGTCGTTGGACTAGACCTCAATCTAGCACCCTAACAAAAAACATTCAAGACCGATTGAATCTGTTTGCTTCTAATCTTAAGACAGCTGGTGATAGTGATTCTCAGATTGAGCGAGGTTTGAAGGAGAGCTATCCATTGATATCTATTCTTGACAGAAGACCGATAGAGTCTGCACTACCGAGTATTTCTAGGCCTATTATGTCCTTGGATGGGAATGAGGATGCTATTGTTGGAGCCCTTAAACAAAGCTTGAGGCAACTAGAATCTCTAGGAGCACAGAGAGCAGGTCTTGAAGACATGCTTAAAGAAATGAAGAGAAAGGATGACATACTCCCTAAATTGATGGCCGGTGTTGGATCACACGATGATCTTTTTAAGAAGGAGATTTCAAAGTATGATCCTGTCTGTGCTGAGATAGCTGATAACATTGTGGCGCAAGAACAACTGCTGCTACAAATACAGGCACAAAATGAACAGTTTGCTGCGGTGTTCAACCTAGAGGATTACAAAGTTGCTCGTGAGAGATGTTACAAGCAAATTGCTGCGGCTGTTGCTAAATACCGAGATATTAAGAAGAACATTAATGAAGGCCTCAATTTTTATGTGACATTACAGGAAGCAATTGGCAAAATAAAGCAGCAGTGCAGTGACTTCATAATGACCCGAAACATTCAATGCCGTGAAATGATCGAAGATGTGCAGAAGAAGCTAGCAGGTTTCAGCTTCTCATCTTCTTCCAGCCAAGCAAGCATGCAGAGGAATACTTCTGTGCCACCAGATCAGAACAGTCCATCACCACCACCACCGTCGTCGCATGCTCCCCATGCTCAGGGCCCATATGGTGTTCCACCCGGAGGCGATTCAAGACCCGGGTACTCTCAGCCCGAGCAAAGACCTGCTTACTCACAGCCATACCCGCCCTATGGCGCGCCACCGCAACAGCCTCCATATGGTGCGCCGTCGCAACAGCCACCTTATGGCGCGCCCCACCCTGGTCACTACCAACAGCCACCACACCAGCAACCTCCCAACCATGACTATGGCCAACAAGCATATCCTGGAGGATGGCGCGGGCAGTACTACAATCCACATCAGCCACAGCCGCAGCCACAGCCGCCATATCCTCAGCCACCGTACAATGCCCAGGGTTCTTACCCTCCTCACCAGAGCAGCTACTACAGGCCTCAATGA

More
Protein seq

MSSAANVMLAIHEKRTTPTDLYRPLRLYIASAYSEREAAAADDDLAAVRDLRADVEQPSLPDPSSLERRRDALLAYARALSLVEPRFPISSDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAVLFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGVAAKAVAAGATTVDVTPECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHFDKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAPLLDSVNKLESNMKTNLERAMKENDRVYLMRVPDASSLGALPAASLVKPTSLAEVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILSLEGNITLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRVNQELLVQTEEMLQKEANEDAQFRTQFGSRWTRPQSSTLTKNIQDRLNLFASNLKTAGDSDSQIERGLKESYPLISILDRRPIESALPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDILPKLMAGVGSHDDLFKKEISKYDPVCAEIADNIVAQEQLLLQIQAQNEQFAAVFNLEDYKVARERCYKQIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLAGFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPGGDSRPGYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ

Function Vacuolar-sorting protein BRO1 [UniProtKB/Swiss-Prot:F4HXZ1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_10g0495300 OsNip_10t0495300-03 Chr10 18837746 18839269 - RAP2018-11-26
CDS seq

TTTGCTGCGGTGTTCAACCTAGAGGATTACAAAGTTGCTCGTGAGAGATGTTACAAGCAAATTGCTGCGGCTGTTGCTAAATACCGAGATATTAAGAAGAACATTAATGAAGGCCTCAATTTTTATGTGACATTACAGGAAGCAATTGGCAAAATAAAGCAGCAGTGCAGTGACTTCATAATGACCCGAAACATTCAATGCCGTGAAATGATCGAAGATGTGCAGAAGAAGCTAGCAGGTTTCAGCTTCTCATCTTCTTCCAGCCAAGCAAGCATGCAGAGGAATACTTCTGTGCCACCAGATCAGAACAGTCCATCACCACCACCACCGTCGTCGCATGCTCCCCATGCTCAGGGCCCATATGGTGTTCCACCCGGAGGCGATTCAAGACCCGGGTACTCTCAGCCCGAGCAAAGACCTGCTTACTCACAGCCATACCCGCCCTATGGCGCGCCACCGCAACAGCCTCCATATGGTGCGCCGTCGCAACAGCCACCTTATGGCGCGCCCCACCCTGGTCACTACCAACAGCCACCACACCAGCAACCTCCCAACCATGACTATGGCCAACAAGCATATCCTGGAGGATGGCGCGGGCAGTACTACAATCCACATCAGCCACAGCCGCAGCCACAGCCGCCATATCCTCAGCCACCGTACAATGCCCAGGGTTCTTACCCTCCTCACCAGAGCAGCTACTACAGGCCTCAATGA

More
Protein seq

FAAVFNLEDYKVARERCYKQIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLAGFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPGGDSRPGYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ

More
Gene Transcript Chromosome Start End Strand Source
OsNip_10g0495300 OsNip_10t0495300-01 Chr10 18837749 18843204 - RAP2018-11-26
CDS seq

ATGTCGTCGGCGGCGAACGTGATGCTGGCGATCCACGAGAAGAGGACCACCCCCACCGACCTCTACCGCCCGCTCCGCCTCTACATCGCCTCCGCCTACTCGGAGCGGGAGGCGGCCGCGGCCGACGACGACCTCGCCGCGGTGCGCGACCTGCGCGCCGACGTCGAGCAGCCGTCGCTCCCGGACCCGTCCTCCCTCGAGCGAAGGCGGGACGCGCTCCTCGCCTACGCGCGCGCCCTGTCCCTCGTCGAGCCCCGCTTCCCCATCTCCTCCGACCGCGCCCACGTCCACTCCCTCGCCTTCACCTGGCACGACGCCTTCAAGACCGGCAAGAAGGCCAGCGTCGCCTCCATCCACCTCGAGAAGGCCGCCGTGCTCTTCAACCTCGCCGCCGTCTACTCCCAGATCGCGCTCGCCGCGGACCGGGCCACCGACGTCGGGATCAGGACCGCGTGCGGCTCGTTCCAGAGCGCGGCGGGGGCGTTCGCGTGGATGAGGGAGAGCGGCGTCGCCGCCAAGGCCGTCGCGGCCGGGGCCACCACCGTCGACGTCACCCCCGAGTGCGCCGCCATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAGGAGTGCTTCTTCGAGAAGGTGATAGCCGGTGGGAAGCCGCCCGCGCTGTGCTCCAAGGTTGCCCGGCAGGTGGGCATATTCTATGAAGAAGCCTATGCAGCTCTTAGCGCAGCTCCTCTCAGTCAGCACTTTGATAAGACATGGGTTTCTCATGTCCAGCTGAAGGCAGCTCAGTTCTATGCTGATGCTTGCTATAGGTGTTCTTTGGATCTTCACGAGAAAGAAGAAATTGCACAGGAAATTGCACGTCTGAAGATTGGAATTAGCGCTTTGGCAGATGCCAAGAAGGTGGCCAGGGGAGTTGCTGCCCCACTTCTTGATTCTGTTAATAAGCTGGAGAGTAATATGAAGACCAACTTGGAGAGGGCTATGAAAGAGAATGACCGTGTTTATCTGATGAGGGTTCCGGATGCTAGTTCTCTTGGCGCGCTCCCTGCAGCATCACTTGTAAAGCCTACATCTTTGGCTGAAGTTCTAGATGCTAGCAAAGAGAGGCTTTTTTCATCACTTGTGCCTGATGGAAGCATGAAAGCACTTTCCAAGTACACTGAGATGGTAGATAACATCATCAGGACTCAAGCGGAGAAATTACAGCAAGCTAGTGAGATCACTAGAGTTAGGTTGAAGGAAATGGACTTGCCCGATTCCATTCTTTCATTAGAAGGTAATATCACCTTACCTTTAGATTTGAAGGAAGACGTTGAGGCTGTTCAGATAAGCGGAGGCCCTGCTGGATTGGAAGCGGAGTTGCAGCAGCTTAGGGATTTAAGCAGAGTCAATCAGGAATTACTTGTTCAGACCGAAGAGATGCTGCAGAAGGAGGCGAATGAAGATGCTCAGTTTCGGACGCAATTCGGGAGTCGTTGGACTAGACCTCAATCTAGCACCCTAACAAAAAACATTCAAGACCGATTGAATCTGTTTGCTTCTAATCTTAAGACAGCTGGTGATAGTGATTCTCAGATTGAGCGAGGTTTGAAGGAGAGCTATCCATTGATATCTATTCTTGACAGAAGACCGATAGAGTCTGCACTACCGAGTATTTCTAGGCCTATTATGTCCTTGGATGGGAATGAGGATGCTATTGTTGGAGCCCTTAAACAAAGCTTGAGGCAACTAGAATCTCTAGGAGCACAGAGAGCAGGTCTTGAAGACATGCTTAAAGAAATGAAGAGAAAGGATGACATACTCCCTAAATTGATGGCCGGTGTTGGATCACACGATGATCTTTTTAAGAAGGAGATTTCAAAGTATGATCCTGTCTGTGCTGAGATAGCTGATAACATTGTGGCGCAAGAACAACTGCTGCTACAAATACAGGCACAAAATGAACAGTTTGCTGCGGTGTTCAACCTAGAGGATTACAAAGTTGCTCGTGAGAGATGTTACAAGCAAATTGCTGCGGCTGTTGCTAAATACCGAGATATTAAGAAGAACATTAATGAAGGCCTCAATTTTTATGTGACATTACAGGAAGCAATTGGCAAAATAAAGCAGCAGTGCAGTGACTTCATAATGACCCGAAACATTCAATGCCGTGAAATGATCGAAGATGTGCAGAAGAAGCTAGCAGGTTTCAGCTTCTCATCTTCTTCCAGCCAAGCAAGCATGCAGAGGAATACTTCTGTGCCACCAGATCAGAACAGTCCATCACCACCACCACCGTCGTCGCATGCTCCCCATGCTCAGGGCCCATATGGTGTTCCACCCGGAGGCGATTCAAGACCCGGGTACTCTCAGCCCGAGCAAAGACCTGCTTACTCACAGCCATACCCGCCCTATGGCGCGCCACCGCAACAGCCTCCATATGGTGCGCCGTCGCAACAGCCACCTTATGGCGCGCCCCACCCTGGTCACTACCAACAGCCACCACACCAGCAACCTCCCAACCATGACTATGGCCAACAAGCATATCCTGGAGGATGGCGCGGGCAGTACTACAATCCACATCAGCCACAGCCGCAGCCACAGCCGCCATATCCTCAGCCACCGTACAATGCCCAGGGTTCTTACCCTCCTCACCAGAGCAGCTACTACAGGCCTCAATGA

More
Protein seq

MSSAANVMLAIHEKRTTPTDLYRPLRLYIASAYSEREAAAADDDLAAVRDLRADVEQPSLPDPSSLERRRDALLAYARALSLVEPRFPISSDRAHVHSLAFTWHDAFKTGKKASVASIHLEKAAVLFNLAAVYSQIALAADRATDVGIRTACGSFQSAAGAFAWMRESGVAAKAVAAGATTVDVTPECAAMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALSAAPLSQHFDKTWVSHVQLKAAQFYADACYRCSLDLHEKEEIAQEIARLKIGISALADAKKVARGVAAPLLDSVNKLESNMKTNLERAMKENDRVYLMRVPDASSLGALPAASLVKPTSLAEVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILSLEGNITLPLDLKEDVEAVQISGGPAGLEAELQQLRDLSRVNQELLVQTEEMLQKEANEDAQFRTQFGSRWTRPQSSTLTKNIQDRLNLFASNLKTAGDSDSQIERGLKESYPLISILDRRPIESALPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDILPKLMAGVGSHDDLFKKEISKYDPVCAEIADNIVAQEQLLLQIQAQNEQFAAVFNLEDYKVARERCYKQIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLAGFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPGGDSRPGYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ

More
Gene Transcript Chromosome Start End Strand Source
OsNip_10g0495300 OsNip_10t0495300-02 Chr10 18837760 18840720 - RAP2018-11-26
CDS seq

ATAGAGTCTGCACTACCGAGTATTTCTAGGCCTATTATGTCCTTGGATGGGAATGAGGATGCTATTGTTGGAGCCCTTAAACAAAGCTTGAGGCAACTAGAATCTCTAGGAGCACAGAGAGCAGGTCTTGAAGACATGCTTAAAGAAATGAAGAGAAAGGATGACATACTCCCTAAATTGATGGCCGGTGTTGGATCACACGATGATCTTTTTAAGAAGGAGATTTCAAAGTATGATCCTGTCTGTGCTGAGATAGCTGATAACATTGTGGCGCAAGAACAACTGCTGCTACAAATACAGGCACAAAATGAACAGTTTGCTGCGGTGTTCAACCTAGAGGATTACAAAGTTGCTCGTGAGAGATGTTACAAGCAAATTGCTGCGGCTGTTGCTAAATACCGAGATATTAAGAAGAACATTAATGAAGGCCTCAATTTTTATGTGACATTACAGGAAGCAATTGGCAAAATAAAGCAGCAGTGCAGTGACTTCATAATGACCCGAAACATTCAATGCCGTGAAATGATCGAAGATGTGCAGAAGAAGCTAGCAGGTTTCAGCTTCTCATCTTCTTCCAGCCAAGCAAGCATGCAGAGGAATACTTCTGTGCCACCAGATCAGAACAGTCCATCACCACCACCACCGTCGTCGCATGCTCCCCATGCTCAGGGCCCATATGGTGTTCCACCCGGAGGCGATTCAAGACCCGGGTACTCTCAGCCCGAGCAAAGACCTGCTTACTCACAGCCATACCCGCCCTATGGCGCGCCACCGCAACAGCCTCCATATGGTGCGCCGTCGCAACAGCCACCTTATGGCGCGCCCCACCCTGGTCACTACCAACAGCCACCACACCAGCAACCTCCCAACCATGACTATGGCCAACAAGCATATCCTGGAGGATGGCGCGGGCAGTACTACAATCCACATCAGCCACAGCCGCAGCCACAGCCGCCATATCCTCAGCCACCGTACAATGCCCAGGGTTCTTACCCTCCTCACCAGAGCAGCTACTACAGGCCTCAATGA

More
Protein seq

IESALPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDILPKLMAGVGSHDDLFKKEISKYDPVCAEIADNIVAQEQLLLQIQAQNEQFAAVFNLEDYKVARERCYKQIAAAVAKYRDIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMIEDVQKKLAGFSFSSSSSQASMQRNTSVPPDQNSPSPPPPSSHAPHAQGPYGVPPGGDSRPGYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDYGQQAYPGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGSYPPHQSSYYRPQ

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 5.270146 4.824523 8.651000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0495433 RBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g35250 RBH 3.181582 3.208194 1.901574
Nipponbare | IRGSP 1.0 | RAP-db Os10g0495300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0015900 RBH 1.117433 32.062157 11.842493
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0016140 RBH 0.678988 5.287590 4.796975
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0015530 RBH 3.576445 25.257742 18.705879
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0016050 RBH 0.031641 0.506011 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0015870 RBH 8.126382 36.275463 25.710052
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0312100 RBH 3.0069495 6.878474 7.921598
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0015770 RBH 0.368815 1.579967 2.365788
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0334800 SBH 5.8412195 12.767868 7.453612
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0015530 RBH 0.344247 0.815465 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0015410 RBH 1.442015 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0015830 RBH 2.191735 13.194706 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0015580 RBH 0.506818 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0016070 RBH 0.578282 13.072300 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G015680 RBH 0.850003 7.220153 4.076895
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0015760 RBH 0.000000 0.000000 0.000000
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.