Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0014500 | OGI:01011440 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:20203410-20206983 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaatgaagtcatatgcagatcctgtcaaaattagcatcaggcagaaaaaggaatctggggagacaaacaaggaaaaactacaattaggtattttcttttaaaaaaatcacatactatgttgatctgaacatcatgtagaaatttaaaaaaAtatcacagtacaactttgaaaaaaaaatcacaggaaaatgttcagctgcagggtgaaggatgcaaaatattaaaaaatacattaagggttaaacactactactttcacaccattgttatcaaaactagaaaagggttaaacactcaaaacacattaacatagcacccaatcttaaatagcactatccatgctgccatacatatgcaaaatcaaacactggaagtagaaattacagtgatttgaaattaaaattaaaattagaaattacagttgtaaaaacaatttatattgcgtgtaacttcactgtaatttttgtgaataagctatgtaaataaatatgtaatacttaacattctagtaagatggtttcagtggacatgtatactaatttattccatgaattttgcaggaatgaaatttactgaaccagtcaaggttggatccatggagaaaaaaggtattgaaacactacactacttattcaagtacaaacatctcacaatttcaaaaacttcaactacatagccaaatataataatcacatatataccactcctttcacttgccactcaataccaaacacacagaaatacaatcacatatgtgcctaaatacagaaattttaaaaatatatgcaaaaccattctaggctaacaatcataatttgacctaaatattatggccaaaaattacagtgctttatatctaaaAttacatttgtaagttcagttgatacaacatgtaataaatccaaaaagtataaaacttacagtgatttataactaaaattacaattgtaaaaacagtttatatgacaagtaagtgcactacaaatgtggttcagtttataactaaaattacaacaatttatgactaaaattacatttgtaaattcagtttatttgtcatgtaagtacactataatttTggtataattgaagtgtaacatgtatgtgtattgtaattttggtgcaaccacaatgtatttgaaaaatatattcatgtttgacataaaacatgcaaatgccacactgaacatatactgctaaagctcaatacatgctaaaaaatacaaatgattctcaaaagacatacctatttaacaaatcagtacctcatatacttcatttctcccatggcacaggtcgtgaagcaatacaagaaggagaaaaattagacaacaatcagaggagagcaaaaatgatgcaatgcagattgaaggaagcaaaagaaacatcaacatggctccaggtcaaaaaaatatatttgaataaattttgctctaagaataaataaaggtaactacaattatgtttgttgattctaaacTatgctctaatgatttatataaAttttacagggaggctggcatatgcaggaagtcctaatatctacaatttgcaggagggtgaaggaagcagcagcaaaatgccccatttaggtactaactaagtttctaaactaccaggtcgacaagctccaacaaaacaattgcaacatacactgatctaatattctgatctttatcttttTcaaaatgcaggatgcaggaaaatacaacacgtaggaaaaaacttcaattcaccagaattaagcaataccataggaacaattgcatcagaagttgtcaattatggaggacaaatgctatatgatcaattcacattgctaaactcagacccaggacaggtatactaatcaaaaagcatagatgtagcatataaaactatttTatacatgcagttataaactaataaacatataactgtgcaggaaggacagttgagctacactaacctcatgcaccaaataattcatagtccaactgtcaccatacagcaacaaacagtaagcatatcaacttacattatatacctaacaaaaaaaaagagaaaAtaataaatgaactgatatgtaaactatgaatatgcagggaggacaagaaagctttacaagtctacttcggacaccagcagcatttgatgtaagaataaaaattTTATGAATACTTATGTAACAATTCCCTAATTAGTCATTTAAATCAGTACTAACTACTGTTTTTTGATATTGCAGAATTCAATGATCTTAACAACCAGTAGATTTTCTCCAGAACTAGAAGAGCAGCAGGATATGACATATGAGCAACACATATCAACTACACACTGGAGCTATGAAGAATTTGATCAGATTTACAACAGCAAATACATCACACCTTTTGCTGAGGTGATTTTAGCTAAAATATTGACTTCAaaAttgtttagacttaagctattttgcactattgattaacaagaacttattgtttggcagaatacaacagcaagaatagaagagctgtatcaatcaaaaaatagccatttcactacaaaggtaaaataaactttgcaacaaaaaaaccctatatcagcaagaattatcaagatataagtctaaccaacacaaaacatgcaggacaatgaagtggatatggcgactgaaaatgatgattatgtggagctgaattcagatgatgaaaatgagcaggtatactatcacttatttgaaaaacacaatacttattcaaataatgttaggaggatagatctgcaatggtgctgacatattacttgaacaaaAttttcaggaagggacttcaaacatgtcacgacccaaatcaacaacagcaattgacgtgcagcaacatgttgggcaagagaacacaagtgagacaaaagctacctcagcaaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgaagaagatagccaagataacactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcattacacacactacaaatctacaagcaaaaaagatttggtcagatcaccagtacacataccagtgctacaggtatggtaatgagatggtcagaagaagaaaaaaaagaaactcagcagcagaggaatacacaggtgattgacagactgattgcaaatgcatgctaacagtgaggcttgaaggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggatgaagagaaaaagttgataaggactttgaaacaatgcaaacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccagaaaagacgtcagcaatgttggaacagcaattaactcagagacaagaaatactgacatgaatcaattgatggaatatctaaggcaaaagaagcaaaagatcctggctactattacaagctga
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| CDS seq | atgaagtcatatgcagatcctgtcaaaattagcatcaggcagaaaaaggaatctggggagacaaacaaggaaaaactacaattaggaatgaaatttactgaaccagtcaaggttggatccatggagaaaaaaggtcgtgaagcaatacaagaaggagaaaaattagacaacaatcagaggagagcaaaaatgatgcaatgcagattgaaggaagcaaaagaaacatcaacatggctccaggagggtgaaggaagcagcagcaaaatgccccatttaggatgcaggaaaatacaacacgtaggaaaaaacttcaattcaccagaattaagcaataccataggaacaattgcatcagaagttgtcaattatggaggacaaatgctatatgatcaattcacattgctaaactcagacccaggacaggaaggacagttgagctacactaacctcatgcaccaaataattcatagtccaactgtcaccatacagcaacaaacaggaggacaagaaagctttacaagtctacttcggacaccagcagcatttgatAATTCAATGATCTTAACAACCAGTAGATTTTCTCCAGAACTAGAAGAGCAGCAGGATATGACATATGAGCAACACATATCAACTACACACTGGAGCTATGAAGAATTTGATCAGATTTACAACAGCAAATACATCACACCTTTTGCTGAGaatacaacagcaagaatagaagagctgtatcaatcaaaaaatagccatttcactacaaaggacaatgaagtggatatggcgactgaaaatgatgattatgtggagctgaattcagatgatgaaaatgagcaggaagggacttcaaacatgtcacgacccaaatcaacaacagcaattgacgtgcagcaacatgttgggcaagagaacacaaacaaaagctacctcagcaaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgaagaagatagccaagataacactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcattacacacactacaaatctacaagcaaaaaagatttggtcagatcaccagtacacataccagtgctacaggtatggtaatgagatggtcagaagaagaaaaaaaagaaactcagcagcagaggaatacacagtgaggcttgaaggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggatgaagagaaaaagttgataaggactttgaaacaatgcaaacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccagaaaagacgtcagcaatgttggaacagcaattaactcagagacaagaaatactgacatgaatcaattgatggaatatctaaggcaaaagaagcaaaagatcctggctactattacaagctga
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| Protein seq | MKSYADPVKISIRQKKESGETNKEKLQLGMKFTEPVKVGSMEKKGREAIQEGEKLDNNQRRAKMMQCRLKEAKETSTWLQEGEGSSSKMPHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQFTLLNSDPGQEGQLSYTNLMHQIIHSPTVTIQQQTGGQESFTSLLRTPAAFDNSMILTTSRFSPELEEQQDMTYEQHISTTHWSYEEFDQIYNSKYITPFAENTTARIEELYQSKNSHFTTKDNEVDMATENDDYVELNSDDENEQEGTSNMSRPKSTTAIDVQQHVGQENTNKSYLSKDNDTINEEDINNYLANEEDSQDNTPVVIDKKHIPCIGKKFRTHEEARSFFNFYAYQVGFSVVITHTTNLQAKKIWSDHQYTYQCYRYGNEMVRRRKKRNSAAEEYTVRLEGDVWRILSMNLNHNHTLTPNREAKFLRSHKHMTDEEKKLIRTLKQCKPTRNMISILSFLRGGIAALPYTRKDVSNVGTAINSETRNTDMNQLMEYLRQKKQKILATITS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0014500 | OsLiXu_10g0014500.01 | Chr10 | 20203410 | 20206983 | + | NAM | ||
| CDS seq | atgaagtcatatgcagatcctgtcaaaattagcatcaggcagaaaaaggaatctggggagacaaacaaggaaaaactacaattaggaatgaaatttactgaaccagtcaaggttggatccatggagaaaaaaggtcgtgaagcaatacaagaaggagaaaaattagacaacaatcagaggagagcaaaaatgatgcaatgcagattgaaggaagcaaaagaaacatcaacatggctccaggagggtgaaggaagcagcagcaaaatgccccatttaggatgcaggaaaatacaacacgtaggaaaaaacttcaattcaccagaattaagcaataccataggaacaattgcatcagaagttgtcaattatggaggacaaatgctatatgatcaattcacattgctaaactcagacccaggacaggaaggacagttgagctacactaacctcatgcaccaaataattcatagtccaactgtcaccatacagcaacaaacaggaggacaagaaagctttacaagtctacttcggacaccagcagcatttgatAATTCAATGATCTTAACAACCAGTAGATTTTCTCCAGAACTAGAAGAGCAGCAGGATATGACATATGAGCAACACATATCAACTACACACTGGAGCTATGAAGAATTTGATCAGATTTACAACAGCAAATACATCACACCTTTTGCTGAGaatacaacagcaagaatagaagagctgtatcaatcaaaaaatagccatttcactacaaaggacaatgaagtggatatggcgactgaaaatgatgattatgtggagctgaattcagatgatgaaaatgagcaggaagggacttcaaacatgtcacgacccaaatcaacaacagcaattgacgtgcagcaacatgttgggcaagagaacacaaacaaaagctacctcagcaaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgaagaagatagccaagataacactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcattacacacactacaaatctacaagcaaaaaagatttggtcagatcaccagtacacataccagtgctacaggtatggtaatgagatggtcagaagaagaaaaaaaagaaactcagcagcagaggaatacacagtgaggcttgaaggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggatgaagagaaaaagttgataaggactttgaaacaatgcaaacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccagaaaagacgtcagcaatgttggaacagcaattaactcagagacaagaaatactgacatgaatcaattgatggaatatctaaggcaaaagaagcaaaagatcctggctactattacaagctga
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| Protein seq | MKSYADPVKISIRQKKESGETNKEKLQLGMKFTEPVKVGSMEKKGREAIQEGEKLDNNQRRAKMMQCRLKEAKETSTWLQEGEGSSSKMPHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQFTLLNSDPGQEGQLSYTNLMHQIIHSPTVTIQQQTGGQESFTSLLRTPAAFDNSMILTTSRFSPELEEQQDMTYEQHISTTHWSYEEFDQIYNSKYITPFAENTTARIEELYQSKNSHFTTKDNEVDMATENDDYVELNSDDENEQEGTSNMSRPKSTTAIDVQQHVGQENTNKSYLSKDNDTINEEDINNYLANEEDSQDNTPVVIDKKHIPCIGKKFRTHEEARSFFNFYAYQVGFSVVITHTTNLQAKKIWSDHQYTYQCYRYGNEMVRRRKKRNSAAEEYTVRLEGDVWRILSMNLNHNHTLTPNREAKFLRSHKHMTDEEKKLIRTLKQCKPTRNMISILSFLRGGIAALPYTRKDVSNVGTAINSETRNTDMNQLMEYLRQKKQKILATITS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34884 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009240 | SBH | 0.209964 | 9.611394 | 2.826511 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015770 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009150 | SBH | 0.000000 | 2.711771 | 3.710001 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009540 | SBH | 0.000000 | 0.114125 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014830 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0298700 | RBH | 0.020497 | 0 | 0.015395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0321600 | RBH | 0.0060505 | 0.0055725 | 0.0039805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014820 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015070 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009390 | SBH | 0.000000 | 0.000000 | 0.284200 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014740 | RBH | 0.0 | 0.0 | 0.0 |
