Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0007950 | OGI:10038650 | 4/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:12959312-12961185 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtacgtattactatatgtacgtgcgtttcccagtgcccataggcagtagctgcctattcaacccaactgcaaaaattaacaggaagttcaaaagagtgcatataaataatttacaagcgtaaaaaaaagttgtagctttcataccacgcttggcagaatctgttatgaacataatcggattgcagagcaaatcataaaacctcaactttccaactccagctttcacaagattaccatctttgtcatagcgtgggcaaaagaagttaccccacgaatttagaaaatacaaatattgtatccCgcagcgcattccagccccaatgataacagcagcatggccagtaggaatcagatttctatccaggaatttggatagtttgggcactctgtaaAtttggcaatactcaagcttttccaatctgctgccgcagtaaaacgcaccaacaagcggaatgccatcagcaagtgtggcacatatcccttcaaagtcatacttatcaattgtttccactgctacagcagtgtaaagccttgaatgatcctacagttatagacaaacatttaatatcttggaaatgtactagacaaaacacatggactagaaaaataaccagcagaattaactcacggcagattgtatgccatcagtttggacagcaagcgccattgtaacaagttttccgattcccgatgtgccatcagaacagttggccaagcacttaccatcaaacatgtcaacaatggcaattgggtctatctctttTacggagtcgggattttttccctgaagaaccgtcttaatcctgtctgctatctcaaggcaagaggctatagaataggcgatacattcagctacaaaaggcaagagcaatgggtttcagcagatgctaacaattatcaaacaaatcaaAtttatgaagcgaaataatttggtgcacagcttagcagcctatcttgaaagaagagGctcaatagcgtgctagatcatgttggcagacaatcaaccattttgctgtcaaacaaattaggcatgaccatgaattggattggctgtgaaaactgttttcaacttattgaaagcgtaaaggatttgatgttccctatgaaatcaaaccagaatatcccagcatagtaaaatagtgttatttgtactaattgaaaagaaaaaccaatatagcatccacgttgctaccttagttatgacatcataaatccaacaataactacaccaagcacgaagccagtacaagccacatagtcaacaaatcggtaatgaaaattgcagtaaaaaagaagtgttccatttatcctaaaccaagcaagacgaactatgcaggccaaaatcaaagatacgaggaggacactcacgattatcgtattgattcttgatattgtcgagcccaccaatcagagaacgcttgtttgccttgacgaggtcatagcagaagttcatttcaccaagaaacggagcttcgcatccacgacaatggaatgctggtagatcaaacagtagtttctcaacagggaggtttatcgaaccgcattgaaagcattcccagctctcggtatcacagctacttctgacgccgcgcctgacgcgatctagggttggcagcctgacgccgccttcgggctccatcagagatcaccgagagctgtaaccacgagaccaaaagaaccagaaaaataaaggtgaaaaggacaaatgtaaaacctcgtagcaagcaaagaaaaactgaggccgggagggatagaacggggaaacggaggagtatacctagaatatggaggcggcggcggcggcggcgacaggcggcggcgattggcgtcggcgggacaaaccctaaaaggtactggataaagaagagtctgat
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| CDS seq | atggagcccgaaggcggcgtcaggctgccaaccctagatcgcgtcaggcgcggcgtcagaagtagctgtgataccgagagctgggaatgctttcaatgcggttcgataaacctccctgttgagaaactactgtttgatctaccagcattccattgtcgtggatgcgaagctccgtttcttggtgaaatgaacttctgctatgacctcgtcaaggcaaacaagcgttctctgattggtgggctcgacaatatcaagaatcaatacgataatcctgaatgtatcgcctattctatagcctcttgccttgagatagcagacaggattaagacggttcttcagggaaaaaatcccgactccgtAaaagagatagacccaattgccattgttgacatgtttgatggtaagtgcttggccaactgttctgatggcacatcgggaatcggaaaacttgttacaatggcgcttgctgtccaaactgatggcatacaatctgccgatcattcaaggctttacactgctgtagcagtggaaacaattgataagtatgactttgaagggatatgtgccacacttgctgatggcattccgcttgttggtgcgttttactgcggcagcagattggaaaagcttgagtattgccaaaTttacagagtgcccaaactatccaaattcctggatagaaatctgattcctactggccatgctgctgttatcattggggctggaatgcgctgcGggatacaatatttgtattttctaaattcgtggggtaacttcttttgcccacgctatgacaaagatggtaatcttgtgaaagctggagttggaaagttgaggttttatgatttgctctgcaatccgattatgttcataacagattctgccaagcgtggtatgaaagctacaacttttttttacgcttgtaaattatttatatgcactcttttgaacttcctgttaatttttgcagttgggttgaataggcagctactgcctatgggcactgggaaacgcacgtacatatag
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| Protein seq | MEPEGGVRLPTLDRVRRGVRSSCDTESWECFQCGSINLPVEKLLFDLPAFHCRGCEAPFLGEMNFCYDLVKANKRSLIGGLDNIKNQYDNPECIAYSIASCLEIADRIKTVLQGKNPDSVKEIDPIAIVDMFDGKCLANCSDGTSGIGKLVTMALAVQTDGIQSADHSRLYTAVAVETIDKYDFEGICATLADGIPLVGAFYCGSRLEKLEYCQIYRVPKLSKFLDRNLIPTGHAAVIIGAGMRCGIQYLYFLNSWGNFFCPRYDKDGNLVKAGVGKLRFYDLLCNPIMFITDSAKRGMKATTFFYACKLFICTLLNFLLIFAVGLNRQLLPMGTGKRTYI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0007950 | OsLiXu_10g0007950.01 | Chr10 | 12959312 | 12961185 | - | NAM | ||
| CDS seq | atggagcccgaaggcggcgtcaggctgccaaccctagatcgcgtcaggcgcggcgtcagaagtagctgtgataccgagagctgggaatgctttcaatgcggttcgataaacctccctgttgagaaactactgtttgatctaccagcattccattgtcgtggatgcgaagctccgtttcttggtgaaatgaacttctgctatgacctcgtcaaggcaaacaagcgttctctgattggtgggctcgacaatatcaagaatcaatacgataatcctgaatgtatcgcctattctatagcctcttgccttgagatagcagacaggattaagacggttcttcagggaaaaaatcccgactccgtAaaagagatagacccaattgccattgttgacatgtttgatggtaagtgcttggccaactgttctgatggcacatcgggaatcggaaaacttgttacaatggcgcttgctgtccaaactgatggcatacaatctgccgatcattcaaggctttacactgctgtagcagtggaaacaattgataagtatgactttgaagggatatgtgccacacttgctgatggcattccgcttgttggtgcgttttactgcggcagcagattggaaaagcttgagtattgccaaaTttacagagtgcccaaactatccaaattcctggatagaaatctgattcctactggccatgctgctgttatcattggggctggaatgcgctgcGggatacaatatttgtattttctaaattcgtggggtaacttcttttgcccacgctatgacaaagatggtaatcttgtgaaagctggagttggaaagttgaggttttatgatttgctctgcaatccgattatgttcataacagattctgccaagcgtggtatgaaagctacaacttttttttacgcttgtaaattatttatatgcactcttttgaacttcctgttaatttttgcagttgggttgaataggcagctactgcctatgggcactgggaaacgcacgtacatatag
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| Protein seq | MEPEGGVRLPTLDRVRRGVRSSCDTESWECFQCGSINLPVEKLLFDLPAFHCRGCEAPFLGEMNFCYDLVKANKRSLIGGLDNIKNQYDNPECIAYSIASCLEIADRIKTVLQGKNPDSVKEIDPIAIVDMFDGKCLANCSDGTSGIGKLVTMALAVQTDGIQSADHSRLYTAVAVETIDKYDFEGICATLADGIPLVGAFYCGSRLEKLEYCQIYRVPKLSKFLDRNLIPTGHAAVIIGAGMRCGIQYLYFLNSWGNFFCPRYDKDGNLVKAGVGKLRFYDLLCNPIMFITDSAKRGMKATTFFYACKLFICTLLNFLLIFAVGLNRQLLPMGTGKRTYI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.160422 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0366400 | RBH | 1.232400 | 1.853252 | 5.688403 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22170 | RBH | 0.747418 | 1.117851 | 1.344702 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0366400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000720 | SBH | 0.221569 | 0.529795 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000770 | SBH | 0.0 | 0.0 | 0.607289 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008000 | RBH | 0.047179 | 0.142343 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000750 | SBH | 0.462926 | 0.770368 | 4.265716 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
