Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_10G000750 | OGI:10004660 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr10:1420928-1424785 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGCTAAGCCATAACAGGTCGTTCATAACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTGACAAGTGACAACCCAGAATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAGCAACTTCTACCTGGAAACTGGAAAGTCAAACAATTTCACAAGAATGAGCACTTATCAGAATTGTCGAGTTTCAGGCAAAACCATATCAAGAGGTGCAAAAGTTGTGCCGGATAAACTGCGAGCAAGAGCTGACATAATACAGGGGCCAAATCTTTGGCAGAGAAAACCACAGGATACGTATGCATCATATGCTGAGCACATGCTAGCTTGACTGCTATATACTAAAATATCATTTCAATTGCAGGCAGTTTCAACTACATTCAGAAAGTCAGGTGCTAGCCAGTCGTAATATTCCCAAGTATCCAGATGACAGAAAACCAAACTTCAATAGCTGGCTTGCAAATTTAATAAATGAGTTGCAAAGTTAATGATTGAAGGTTAAGTTTCACTAGACTCCACATATGCCAACCATGTCCTATTGGCAGGTCCAGTTCAAACCAAGGAAACACTGGTTCACACATGTTCGAGGGGATAACAATATATATTGGCAAAAACAACATAGCATAAGCAATGCGATAGCCAGTTTTCTTGCTCAAATGACTAAAATACGGAAAACTCCTAGTTAATTTGGTGATATGTAACAGCAGGCAACTCAAGAGTGCTTACAAATAAACTCCAAACCATAATGGGCATTCATCATTCAAAATTAAGACACTTGCTGTACCTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCATCACGAAATAAGTGGTCATCCAAACCATCTGAGGAAAAAAAACAATAATCAACATATATATAATTAATTGCACAAATCAAATCTTCATTCTTACCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGATCGTCTAACCTTCTTGTAACACCTAAATGGAACACAATTAGCATCCAAACTCATAACTAAGTTTATATGATGAGTTGAAAAATAATTACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCCTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTTTTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTTCCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCAAAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGACTACAAAAAGTAAACAATAAGTATTAGGCATCACTAAATGCAAGAAAATGGTATATGTCAAAATTGCTACTGGACATCTATTTTGAATAAGAACTTGCTGCAATAGGCACTGCAAATGCAACCCATTTGAGAATATCTGTAGCTTCGAAATGGCCAAAATGTGGATGAGGTCACTCAGACCTTCTGCCACCACTGGCCACCTGGTCTCCCCCATCAAGCTCACCGATGACCCCCTCCCCTTACCACAATCTCACTTGTGCCTCCTCACCTGCCATTATAGGCCATCTCCATTCTGGAGGTTGCTACCAGGGCCTCCTTAACTTCTCTTGCTTGGCATGGGGAGGGGATGAATGGTGGGCTGGCAGTAGCAGCTAAGTCCTGTCCCCATAGGACAGAGAAAAGAGCAAGAACGGTATGGTCTCAGAAGCTAACAAGGGCAAAATGGACATTTGACATACTTCTCTTCTTAGGTAGTCAGATGGAGTATAATTTTTTAAGAGCTCTACTCTGTTGAAAATGGGCCACACTTCACCGTATCCTAGAGCCAAATATGAAATTTTAGGTGTGTTTCAGCATATGGTGTCGGATACAGATGTCCAATAGCAAATTGTCAGAAATATAATTATGCAAACATAAAAGTGACCTACTTTCTCTTTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAATCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGCAGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAACACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGACTGCAAAACACAAAAAAAAATAGAGAAAAATTAGGAGGGACCTCTTGAACACATAAGTTATAACCATATGTAAAGTTGCATAAGGTTCTATCATTGCCCTCTAATCACTGAATCAGTTAGATGTGTAATATGTATATAAAACAATAGAGTATAGACATCTCATATATTACTTGTAAATCTTCATGCTGAGAGTGGATTCTAGCAAATGCTTATAGGCTAGCTTTCAGGGAACAGGAAGTTATATTCATTAAATGGTTAATGACGTTAAAAAGATAACGGTGTTGAAACTCACATATAACTCATTTGCCAACTGCTAAGTCCTACTCAAATCTCTTTGAAATAAAAACACTTACGTTGTTCGCCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAAAATTTAAAACTTCCGCAAAACTGCAAAGAAAAATAATAATAATGTTCAGCAAACAAATAGTATTAATTTGAAACCAAAAGGGGAAAAAAATGTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGAAGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAGGCTTTAGCATCATTACAGCTTCGAAGTCCCCTCCGTTTCGCCATGGTTACAACTATCAATGTTATCATGTAACTATGTTAAGATCTGGGTTTCAAATATGGCCAATGAAAAAATTCCATAAACATCCAACTCACCCAAAGAATTATATTAGGGTTGGTGGTTCAATATTTGGAGGGGTAGGGCACATGAGGGGTCAATACTATACAGAGATGCACAGGGTCAATAAACTAGTCATGCAACAGCTCCTAATAGACCCATTATTATCTCATCCCTCACAACTGAACTAACCGGAGCACGTTCTATAGCAAAATGATAAATAAGACGCGGCAGCAGGTCCGGGGTGGGAGGGATGCGGCAAGGAAGAAGAAGAAGAGGCCGAAGAGAGGGAAGTCGTGAATCTACCAGAATTCGGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGGGCCTGCAGTAGAGGGCAGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGAGTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCAGCGGCGGCGGTCGGAGGCGAGGAGCAGGTGGTGAGGAATTCGAATCGCGTGGAGGC
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| CDS seq | ATGGAAAGGGTGTTTAGCATTTCGGAAGGCAAGGACCCAGATCTGGTGCAATGCATTGATCCATTTGAGCTGCACAAAAAGTTTGAGGATAAGTTTCCTGAGGTGCTTTCTATCAACTGCCTTACAAGAGATTACGGCCTACACCGTGTCCTTCATACCGCGCTGATTCTCAGATCAGAAGGGATCACTAAAGAGAAATCTGGTAACCGATATGTTGCAAGAGATGTATCCACAATTCCACGAGATGACTTTGAGACTATTTGTCAGAACTTAGCAGAGGGCATTCCGATGGTTGCTACCTACATTCCTGGAAAAAGAAGAAGTCTCCTCCGCTATTGCCAGATATACAAGTCCCCTCGATCAAAATCTGGTGAAAAACAATTGCACGCACAGATAGGACACGCTGTTGTCCTCATTGGTGCTGGGATGAAAAGGGGGAGGGTATTCTTCTATTTTTTGAATTCTTGGGGTGAAAAATTCTGTCCCCGCAAGAATAATCAAGGTGAGATAGTAACCGGTGGCATTGGCAAACTGAGGGAGGATGACTTAACTAAAAATGTTGTAAGACTATCACCTCCAGGAGAAACTGGTGTTACAAGAAGGTTAGACGATCAGTTTGAATTGGAGATTTCTGATCCTAACTATCTGTTAATGATGGCTACGAGGAATCAATATTCTGAGATGATGATGATGAAGCTGAGACAAAAGAATCTCCAAGAGTTTCGAAAAGATGGTTTGGATGACCACTTATTTCGTGATGATCTTTGTGTTGGTATACAAGGCCATAAAGAATTAGAACAAGCTGTAAGCTGA
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| Protein seq | MERVFSISEGKDPDLVQCIDPFELHKKFEDKFPEVLSINCLTRDYGLHRVLHTALILRSEGITKEKSGNRYVARDVSTIPRDDFETICQNLAEGIPMVATYIPGKRRSLLRYCQIYKSPRSKSGEKQLHAQIGHAVVLIGAGMKRGRVFFYFLNSWGEKFCPRKNNQGEIVTGGIGKLREDDLTKNVVRLSPPGETGVTRRLDDQFELEISDPNYLLMMATRNQYSEMMMMKLRQKNLQEFRKDGLDDHLFRDDLCVGIQGHKELEQAVS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G000750 | OsN22_10G000750_01 | Chr10 | 1421864 | 1424132 | - | NAM | ||
| CDS seq | ATGGAAAGGGTGTTTAGCATTTCGGAAGGCAAGGACCCAGATCTGGTGCAATGCATTGATCCATTTGAGCTGCACAAAAAGTTTGAGGATAAGTTTCCTGAGGTGCTTTCTATCAACTGCCTTACAAGAGATTACGGCCTACACCGTGTCCTTCATACCGCGCTGATTCTCAGATCAGAAGGGATCACTAAAGAGAAATCTGGTAACCGATATGTTGCAAGAGATGTATCCACAATTCCACGAGATGACTTTGAGACTATTTGTCAGAACTTAGCAGAGGGCATTCCGATGGTTGCTACCTACATTCCTGGAAAAAGAAGAAGTCTCCTCCGCTATTGCCAGATATACAAGTCCCCTCGATCAAAATCTGGTGAAAAACAATTGCACGCACAGATAGGACACGCTGTTGTCCTCATTGGTGCTGGGATGAAAAGGGGGAGGGTATTCTTCTATTTTTTGAATTCTTGGGGTGAAAAATTCTGTCCCCGCAAGAATAATCAAGGTGAGATAGTAACCGGTGGCATTGGCAAACTGAGGGAGGATGACTTAACTAAAAATGTTGTAAGACTATCACCTCCAGGAGAAACTGGTGTTACAAGAAGGTTAGACGATCAGTTTGAATTGGAGATTTCTGATCCTAACTATCTGTTAATGATGGCTACGAGGAATCAATATTCTGAGATGATGATGATGAAGCTGAGACAAAAGAATCTCCAAGAGTTTCGAAAAGATGGTTTGGATGACCACTTATTTCGTGATGATCTTTGTGTTGGTATACAAGGCCATAAAGAATTAGAACAAGCTGTAAGCTGA
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| Protein seq | MERVFSISEGKDPDLVQCIDPFELHKKFEDKFPEVLSINCLTRDYGLHRVLHTALILRSEGITKEKSGNRYVARDVSTIPRDDFETICQNLAEGIPMVATYIPGKRRSLLRYCQIYKSPRSKSGEKQLHAQIGHAVVLIGAGMKRGRVFFYFLNSWGEKFCPRKNNQGEIVTGGIGKLREDDLTKNVVRLSPPGETGVTRRLDDQFELEISDPNYLLMMATRNQYSEMMMMKLRQKNLQEFRKDGLDDHLFRDDLCVGIQGHKELEQAVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G000750 | OsN22_10G000750_02 | Chr10 | 1420928 | 1424785 | - | IsoSeq | ||
| CDS seq | CCTCCACGCGATTCGAATTCCTCACCACCTGCTCCTCGCCTCCGACCGCCGCCGCTGCCGCGGGGCGAGGCGAGGCGAGGCGAGGCTTACTCGTCGGCGCACCACCCAGCCTCTGGCATCCGGGCCCCGCCGCTGCCCTCTACTGCAGGCCCGCCGCGCCGAGCCGTACTGCCGACCTCCACGGCTGCCATCTCCGTCTCGCCTCCCCCCGAATTCTGTTGTAACCATGGCGAAACGGAGGGGACTTCGAAG
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| Protein seq | PPRDSNSSPPAPRLRPPPLPRGEARRGEAYSSAHHPASGIRAPPLPSTAGPPRRAVLPTSTAAISVSPPPEFCCNHGETEGTSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.462926 | 0.770368 | 4.265716 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000720 | RBH | 0.221569 | 0.529795 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0021100 | SBH | 0.6822945 | 16.388183 | 36.7234555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000770 | RBH | 0.0 | 0.0 | 0.607289 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0023300 | RBH | 0.2267795 | 6.818413 | 2.671441 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008000 | RBH | 0.047179 | 0.142343 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000760 | RBH | 0.000000 | 0.0 | 0.768941 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
