Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0005810 | OGI:09029440 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:10318828-10320035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtccttgatgttaaaatcatgtttcttatacctgtcagtctttccgagaggatccgacatagataaggatgaactcattcgtcaatggattgcattagacttgattaactctagcagacatgggaccttacctgcatttctacacggggagatgttcattgaagcacttgtatcaagatcatttcttcaaattgtcaacaacatcctcagtaagttgttaaatattttttcggttatatatatttcctgttttttcatgaccaataagcttggttagcttgttactgttgcaatattggtgttgcatgttgtgcttacactacaagaaaacatatttttgcaagtaatgtatatcttttatttttcacatcttctgagttttttggtcaggcttattacatgtttaagtgttcagtttggattgtttatgataaattgttggccaacatctaatatgaattccatactgacagatagttctgataactgacagtcttctttttttaggttaccgagaagaaatgcaagaaccctcctcctaccattctaaagtgcacagcttggtttacgattttttgagatatatgcagcggatgatatttactttggattatgcgaaatcaccaatattctgtaagaaatcacctttccggtatgcagtattaactaattacagttggcaagctaaaatgcacgaagattcatagccaaggccaaggcggcaagcagcaatttcagaaatgtgaggcaacaatgcctactgggatatatttcccatactaagatactcaaactcaagaacttgccccaaaacattggtgatctcaagaggctagaacacctcaactgtcatgctgtcctgaaatccgtgagttacttcatctatctccggtcttgatgaacttaagttgctcaactatcaagttgcaccaagcttgagctactgcctcatcagtttcggtaacttatcctgttttagagagtcttgagatggcaggatgctgtagtccttcagagattaccagaatcgtttggtggcctctctaagctctgttctttaagcttagcaagttgttctagccttcaacgattgccagattatattggtggttgtgtagtttagagtacttgaacatttcacatgctcaccttgagctaccggattcactgaccaagctccagagcctccacatagtgaactcatag
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| CDS seq | atgtccttgatgttaaaatcatgtttcttatacctgtcagtctttccgagaggatccgacatagataaggatgaactcattcgtcaatggattgcattagacttgattaactctagcagacatgggaccttacctgcatttctacacggggagatgttcattgaagcacttgtatcaagatcatttcttcaaattgtcaacaacatcctcagttaccgagaagaaatgcaagaaccctcctcctaccattctaaagtgcacagcttggtttacgattttttgagatatatgcagcggatgatatttactttggattatgcgaaatcaccaatattctgtaagaaatcacctttccgattcatagccaaggccaaggcggcaagcagcaatttcagaaatgtgaggcaacaatgcctactgggatatatttcccatactaagatactcaaactcaagaacttgccccaaaacattggtgatctcaagaggctagaacacctcaactgtcatgctgtcctgaaatccttgctcaactatcaagttgcaccaagcttgagctactgcctcatcagtttcgagtacttgaacatttcacatgctcaccttgagctaccggattcactgaccaagctccagagcctccacatagtgaactcatag
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| Protein seq | MSLMLKSCFLYLSVFPRGSDIDKDELIRQWIALDLINSSRHGTLPAFLHGEMFIEALVSRSFLQIVNNILSYREEMQEPSSYHSKVHSLVYDFLRYMQRMIFTLDYAKSPIFCKKSPFRFIAKAKAASSNFRNVRQQCLLGYISHTKILKLKNLPQNIGDLKRLEHLNCHAVLKSLLNYQVAPSLSYCLISFEYLNISHAHLELPDSLTKLQSLHIVNS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0005810 | OsLiXu_09g0005810.01 | Chr09 | 10318828 | 10320035 | + | NAM | ||
| CDS seq | atgtccttgatgttaaaatcatgtttcttatacctgtcagtctttccgagaggatccgacatagataaggatgaactcattcgtcaatggattgcattagacttgattaactctagcagacatgggaccttacctgcatttctacacggggagatgttcattgaagcacttgtatcaagatcatttcttcaaattgtcaacaacatcctcagttaccgagaagaaatgcaagaaccctcctcctaccattctaaagtgcacagcttggtttacgattttttgagatatatgcagcggatgatatttactttggattatgcgaaatcaccaatattctgtaagaaatcacctttccgattcatagccaaggccaaggcggcaagcagcaatttcagaaatgtgaggcaacaatgcctactgggatatatttcccatactaagatactcaaactcaagaacttgccccaaaacattggtgatctcaagaggctagaacacctcaactgtcatgctgtcctgaaatccttgctcaactatcaagttgcaccaagcttgagctactgcctcatcagtttcgagtacttgaacatttcacatgctcaccttgagctaccggattcactgaccaagctccagagcctccacatagtgaactcatag
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| Protein seq | MSLMLKSCFLYLSVFPRGSDIDKDELIRQWIALDLINSSRHGTLPAFLHGEMFIEALVSRSFLQIVNNILSYREEMQEPSSYHSKVHSLVYDFLRYMQRMIFTLDYAKSPIFCKKSPFRFIAKAKAASSNFRNVRQQCLLGYISHTKILKLKNLPQNIGDLKRLEHLNCHAVLKSLLNYQVAPSLSYCLISFEYLNISHAHLELPDSLTKLQSLHIVNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0327800 | SBH | 1.132693 | 0.075833 | 2.341554 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005870 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005940 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006080 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005960 | SBH | 0.031155 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006130 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0173500 | SBH | 0.0159685 | 0.031977 | 0.0112915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006290 | SBH | 0.0 | 0.0 | 0.061963 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0150200 | SBH | 0.3528915 | 1.609681 | 0.4504775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005950 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005930 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0050300 | SBH | 0.0 | 0.0 | 0.100309 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005900 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006210 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006090 | SBH | 0.0 | 0.0 | 0.0 |
