Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0006080 | OGI:09029430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:10445390-10449226 | ||||||||
| Gene Symbol | PI56, Pi56, qBR9.1, Pi56(t), - | ||||||||||
| DNA seq | atggccatggcggggaaagcgaccgccgtcgacgtgctacgcggcctcaagcggcgcgtcgaccgctgccgccgccagtacgcgccgtggctgccgtggaagctcgacgaggccttgggcgtgggcgtcaacccgaccctctccctgctgctggacatgctgctgctaccgctgccgctgccgccgccggtgccggacgacgagctgggcgccatcaaggcggcgctctacgagctggaggatctgctcgacgacctcgacgaccacgccggcgtcaggcgccggccgggtcgccccacctggaaggtgagtttggattaattggacaagttttctcccctcctctccacatcacacaattcgatactccatctgtttcaggtcataagatgttttgactctagtaatttaactaattttatagaaaaaagtactaatatttttaacccaagacaaaatttatttaattatagatttaattaaaactatgctggtgttataaatgtcactactttttttaatacataattaatcaaacttagagtaatttgactttgaccaaagtcaaaacgttttataatttgaaacggaaggagtaattttcagtatctcactatcaaattttgttcatcatttggtactgtgatatgatattgtcgattgacacgcttcgtaatgtctttgtctcggatattgaattgaagtattgcctcgcaaaggaaataaagtactatttatgtaaagatattgagcctacagagtttcatgttattatgtcagatagcaatttgttggttgggggtagagtggacatgaacatttttcctgttcaaagctatggctcagtgcctcacatatatcagttgatacatcgatccgttgagataaatgtgatttcttaagccttgcattagcagaagtagttttatgctagtactttttctactgtctgttttagattgaagaattaaaagaaaaaaaaaacacattgttgtgttgtattgctgcttggcatttcttggctagctaattgtctactgccacagtttcactaattttttgcatacataaatcagttctttttttagcctagcaatttgttgttctgtaacttgactaaaaattatccaacccacacttcatatttaccgtgcacctcttccacagcactgttggttgtacaatactacagactatacagtaatgcttgcaattgagtaactcatgaaaatctgtaacttgtgcggacaactgcaataccatttgctaccatactaatcatgttgacttgagttgctagatgttcattagagtttaactatatatgccaatataattttgtactatattggcatagtcttttgggaacccaaagtatttcaactaatgggagcaatttttgcaggagacattattctggttatcgagtccagcactcttgcattcaactgtggcccatagattgaatatagtcagtacaaaattgaattttgtggctggaagtttttccttatttctgaagcggaataatgatgccgaattcaaattacatcatcagcacactaatccaaaacacgagaaatacaaggagatggcaggatttgatgaacccacaatcattggaagggatactgagaaagaagatttaaaagatttgctctcgcaaagtaatcctgatgacatatcaatccttcctattgttggccttctaggtttgggtaaaacaagtcttgccaggttagtttttgaggataatgaagaaggttgggactttgatcttaggatatggattcatgtcgacgacaattttgaccttgagaaatttgcagtgtccattatctcggaagctaacaaattgatgaaaggaaaattttcccacattctcaatagatcagattgtccaagctacttaaagttcaaggattgtattgaagagattctttctagtagtagctgtttaattgttctagatggtctattatatgcaaacgaacactggttgcctgatctgaagtatgtgctggggaagactaaacataaatgtacaagatttatagtgacgacttctagtgaagaagttgcagaagtgatgcagactattccatcttacaagttaggcggtttatctgaagatgattgctggactttattttctgagaaagcatttggaagtagggatgcaacaattcattcatggcagacaaaaattggcaaggagattgtaaagcagtgcatgggcatgcctatattagctcaatctcttggtctgatggtgcacaatcaagacatggacacttggcttgctgcagggaatgatgaattgtgggaactagtggaaagacattcccttgaaacggaagtgttctcatcattcaagcagatatattacgacatgtccttgatgtcaaaatcatgtttcttatccctgtcagtctttccGAgaggatccgatatagataaggatgaactgattcgtcaatggattgcattagacttgattaactcaaacagacatgggaccttacctgcagttctacacggggagatgttcattgaagcacttgtatcaatatcatttcttcaaattgtcaacacatccttagtaagttgttaaatattttttcagttatatttttttcctgttttttcatgaacaataagcttggttagcttgttactgttgcaatattggtggttgcatactgtgcttacactaacaagaaaacattttttttgcaagtaatgtatattcttttatttttcacatcttctgggtttttggtcaggcttattacatgtttaagtgttcagtttggattgttattataatattttccctaatagttctgataaactgatgatcttcTtttttaggttaccaagaagaaatgcaagaatcctcctcctaccattcttaaagtgcacagcttggtttatgattttttgagatatattgccgcggctgatatctttactttggattatgcgaaatcaccaaatatttctgtaagaaatcaacctttccggtatgcagtattaactaattacagttggcaagctacaatgcacgaagatttgatagccaaggccaaggcggcaaaagcagcaattttcagaaactgtgaggcaacaatgcctattgcggatatattcccaatactaagatactcacgtctcttggatctcagtggatgtctctttcaagaattacctgcttctatcggtgaattgaagcatttgagatttctcaatgtttcgtgcttcaggataacagaactgcccaacgaaatgtgctgcttgcgaagccttgagtattttgatctctcaaaaacttgcatcgaagttctgcccttgtttgtcggagcttttgataagctgaaatacttcaatctgcatggatgtggcaaactcaagaacttgccccgaaacattggtgatctcaagaggctagaacacctcaacctgtcatgctgtcctgaaatccgtgagttaccttcatctatctccggtcttgatgaacttaagttgctcaacctatcaagttgcaccaagcttgagctactgcctcatcagttcggtaacttatctcgtttagaaattcttgaattggaaagatgctgcaatcttcagcgattaccagaatcgtttggtggcctctctaagctctgttctttaagcttagcgagttgctctgggcttcaacggttgccagattgtattggtgagttgtgtagtttggagcacttgaacatttcacatgctcaccttgagctaccggattcactgaccaagctccagagcctccacatagtgaactcatatgttgtgatcaactga
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| CDS seq | atggccatggcggggaaagcgaccgccgtcgacgtgctacgcggcctcaagcggcgcgtcgaccgctgccgccgccagtacgcgccgtggctgccgtggaagctcgacgaggccttgggcgtgggcgtcaacccgaccctctccctgctgctggacatgctgctgctaccgctgccgctgccgccgccggtgccggacgacgagctgggcgccatcaaggcggcgctctacgagctggaggatctgctcgacgacctcgacgaccacgccggccaatttttgcaggagacattattctggttatcgagtccagcactcttgcattcaactgtggcccatagattgaatatagtcagtacaaaattgaattttgtggctggaagtttttccttatttctgaagcggaataatgatgccgaattcaaattacatcatcagcacactaatccaaaacacgagaaatacaaggagatggcaggatttgatgaacccacaatcattggaagggatactgagaaagaagatttaaaagatttgctctcgcaaagtaatcctgatgacatatcaatccttcctattgttggccttctaggtttgggtaaaacaagtcttgccaggttagtttttgaggataatgaagaaggttgggactttgatcttaggatatggattcatgtcgacgacaattttgaccttgagaaatttgcagtgtccattatctcggaagctaacaaattgatgaaaggaaaattttcccacattctcaatagatcagattgtccaagctacttaaagttcaaggattgtattgaagagattctttctagtagtagctgtttaattgttctagatggtctattatatgcaaacgaacactggttgcctgatctgaagtatgtgctggggaagactaaacataaatgtacaagatttatagtgacgacttctagtgaagaagttgcagaagtgatgcagactattccatcttacaagttaggcggtttatctgaagatgattgctggactttattttctgagaaagcatttggaagtagggatgcaacaattcattcatggcagacaaaaattggcaaggagattgtaaagcagtgcatgggcatgcctatattagctcaatctcttggtctgatggtgcacaatcaagacatggacacttggcttgctgcagggaatgatgaattgtgggaactagtggaaagacattcccttgaaacggaagtgttctcatcattcaagcagatatattacgacatgtccttgatgtcaaaatcatgtttcttatccctgtcagtctttccGAgaggatccgatatagataaggatgaactgattcgtcaatggattgcattagacttgattaactcaaacagacatgggaccttacctgcagttctacacggggagatgttcattgaagcacttgtatcaatatcatttcttcaaattgtcaacacatccttagttaccaagaagaaatgcaagaatcctcctcctaccattcttaaagtgcacagcttggtttatgattttttgagatatattgccgcggctgatatctttactttggattatgcgaaatcaccaaatatttctgtaagaaatcaacctttccggtatgcagtattaactaattacagttggcaagctacaatgcacgaagatttgatagccaaggccaaggcggcaaaagcagcaattttcagaaactgtgaggcaacaatgcctattgcggatatattcccaatactaagatactcacgtctcttggatctcagtggatgtctctttcaagaattacctgcttctatcggtgaattgaagcatttgagatttctcaatgtttcgtgcttcaggataacagaactgcccaacgaaatgtgctgcttgcgaagccttgagtattttgatctctcaaaaacttgcatcgaagttctgcccttgtttgtcggagcttttgataagctgaaatacttcaatctgcatggatgtggcaaactcaagaacttgccccgaaacattggtgatctcaagaggctagaacacctcaacctgtcatgctgtcctgaaatccgtgagttaccttcatctatctccggtcttgatgaacttaagttgctcaacctatcaagttgcaccaagcttgagctactgcctcatcagttcggtaacttatctcgtttagaaattcttgaattggaaagatgctgcaatcttcagcgattaccagaatcgtttggtggcctctctaagctctgttctttaagcttagcgagttgctctgggcttcaacggttgccagattgtattggtgagttgtgtagtttggagcacttgaacatttcacatgctcaccttgagctaccggattcactgaccaagctccagagcctccacatagtgaactcatatgttgtgatcaactga
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| Protein seq | MAMAGKATAVDVLRGLKRRVDRCRRQYAPWLPWKLDEALGVGVNPTLSLLLDMLLLPLPLPPPVPDDELGAIKAALYELEDLLDDLDDHAGQFLQETLFWLSSPALLHSTVAHRLNIVSTKLNFVAGSFSLFLKRNNDAEFKLHHQHTNPKHEKYKEMAGFDEPTIIGRDTEKEDLKDLLSQSNPDDISILPIVGLLGLGKTSLARLVFEDNEEGWDFDLRIWIHVDDNFDLEKFAVSIISEANKLMKGKFSHILNRSDCPSYLKFKDCIEEILSSSSCLIVLDGLLYANEHWLPDLKYVLGKTKHKCTRFIVTTSSEEVAEVMQTIPSYKLGGLSEDDCWTLFSEKAFGSRDATIHSWQTKIGKEIVKQCMGMPILAQSLGLMVHNQDMDTWLAAGNDELWELVERHSLETEVFSSFKQIYYDMSLMSKSCFLSLSVFPRGSDIDKDELIRQWIALDLINSNRHGTLPAVLHGEMFIEALVSISFLQIVNTSLVTKKKCKNPPPTILKVHSLVYDFLRYIAAADIFTLDYAKSPNISVRNQPFRYAVLTNYSWQATMHEDLIAKAKAAKAAIFRNCEATMPIADIFPILRYSRLLDLSGCLFQELPASIGELKHLRFLNVSCFRITELPNEMCCLRSLEYFDLSKTCIEVLPLFVGAFDKLKYFNLHGCGKLKNLPRNIGDLKRLEHLNLSCCPEIRELPSSISGLDELKLLNLSSCTKLELLPHQFGNLSRLEILELERCCNLQRLPESFGGLSKLCSLSLASCSGLQRLPDCIGELCSLEHLNISHAHLELPDSLTKLQSLHIVNSYVVIN |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0006080 | OsLima_09g0006080.01 | Chr09 | 10445390 | 10449226 | + | NAM | ||
| CDS seq | atggccatggcggggaaagcgaccgccgtcgacgtgctacgcggcctcaagcggcgcgtcgaccgctgccgccgccagtacgcgccgtggctgccgtggaagctcgacgaggccttgggcgtgggcgtcaacccgaccctctccctgctgctggacatgctgctgctaccgctgccgctgccgccgccggtgccggacgacgagctgggcgccatcaaggcggcgctctacgagctggaggatctgctcgacgacctcgacgaccacgccggccaatttttgcaggagacattattctggttatcgagtccagcactcttgcattcaactgtggcccatagattgaatatagtcagtacaaaattgaattttgtggctggaagtttttccttatttctgaagcggaataatgatgccgaattcaaattacatcatcagcacactaatccaaaacacgagaaatacaaggagatggcaggatttgatgaacccacaatcattggaagggatactgagaaagaagatttaaaagatttgctctcgcaaagtaatcctgatgacatatcaatccttcctattgttggccttctaggtttgggtaaaacaagtcttgccaggttagtttttgaggataatgaagaaggttgggactttgatcttaggatatggattcatgtcgacgacaattttgaccttgagaaatttgcagtgtccattatctcggaagctaacaaattgatgaaaggaaaattttcccacattctcaatagatcagattgtccaagctacttaaagttcaaggattgtattgaagagattctttctagtagtagctgtttaattgttctagatggtctattatatgcaaacgaacactggttgcctgatctgaagtatgtgctggggaagactaaacataaatgtacaagatttatagtgacgacttctagtgaagaagttgcagaagtgatgcagactattccatcttacaagttaggcggtttatctgaagatgattgctggactttattttctgagaaagcatttggaagtagggatgcaacaattcattcatggcagacaaaaattggcaaggagattgtaaagcagtgcatgggcatgcctatattagctcaatctcttggtctgatggtgcacaatcaagacatggacacttggcttgctgcagggaatgatgaattgtgggaactagtggaaagacattcccttgaaacggaagtgttctcatcattcaagcagatatattacgacatgtccttgatgtcaaaatcatgtttcttatccctgtcagtctttccGAgaggatccgatatagataaggatgaactgattcgtcaatggattgcattagacttgattaactcaaacagacatgggaccttacctgcagttctacacggggagatgttcattgaagcacttgtatcaatatcatttcttcaaattgtcaacacatccttagttaccaagaagaaatgcaagaatcctcctcctaccattcttaaagtgcacagcttggtttatgattttttgagatatattgccgcggctgatatctttactttggattatgcgaaatcaccaaatatttctgtaagaaatcaacctttccggtatgcagtattaactaattacagttggcaagctacaatgcacgaagatttgatagccaaggccaaggcggcaaaagcagcaattttcagaaactgtgaggcaacaatgcctattgcggatatattcccaatactaagatactcacgtctcttggatctcagtggatgtctctttcaagaattacctgcttctatcggtgaattgaagcatttgagatttctcaatgtttcgtgcttcaggataacagaactgcccaacgaaatgtgctgcttgcgaagccttgagtattttgatctctcaaaaacttgcatcgaagttctgcccttgtttgtcggagcttttgataagctgaaatacttcaatctgcatggatgtggcaaactcaagaacttgccccgaaacattggtgatctcaagaggctagaacacctcaacctgtcatgctgtcctgaaatccgtgagttaccttcatctatctccggtcttgatgaacttaagttgctcaacctatcaagttgcaccaagcttgagctactgcctcatcagttcggtaacttatctcgtttagaaattcttgaattggaaagatgctgcaatcttcagcgattaccagaatcgtttggtggcctctctaagctctgttctttaagcttagcgagttgctctgggcttcaacggttgccagattgtattggtgagttgtgtagtttggagcacttgaacatttcacatgctcaccttgagctaccggattcactgaccaagctccagagcctccacatagtgaactcatatgttgtgatcaactga
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| Protein seq | MAMAGKATAVDVLRGLKRRVDRCRRQYAPWLPWKLDEALGVGVNPTLSLLLDMLLLPLPLPPPVPDDELGAIKAALYELEDLLDDLDDHAGQFLQETLFWLSSPALLHSTVAHRLNIVSTKLNFVAGSFSLFLKRNNDAEFKLHHQHTNPKHEKYKEMAGFDEPTIIGRDTEKEDLKDLLSQSNPDDISILPIVGLLGLGKTSLARLVFEDNEEGWDFDLRIWIHVDDNFDLEKFAVSIISEANKLMKGKFSHILNRSDCPSYLKFKDCIEEILSSSSCLIVLDGLLYANEHWLPDLKYVLGKTKHKCTRFIVTTSSEEVAEVMQTIPSYKLGGLSEDDCWTLFSEKAFGSRDATIHSWQTKIGKEIVKQCMGMPILAQSLGLMVHNQDMDTWLAAGNDELWELVERHSLETEVFSSFKQIYYDMSLMSKSCFLSLSVFPRGSDIDKDELIRQWIALDLINSNRHGTLPAVLHGEMFIEALVSISFLQIVNTSLVTKKKCKNPPPTILKVHSLVYDFLRYIAAADIFTLDYAKSPNISVRNQPFRYAVLTNYSWQATMHEDLIAKAKAAKAAIFRNCEATMPIADIFPILRYSRLLDLSGCLFQELPASIGELKHLRFLNVSCFRITELPNEMCCLRSLEYFDLSKTCIEVLPLFVGAFDKLKYFNLHGCGKLKNLPRNIGDLKRLEHLNLSCCPEIRELPSSISGLDELKLLNLSSCTKLELLPHQFGNLSRLEILELERCCNLQRLPESFGGLSKLCSLSLASCSGLQRLPDCIGELCSLEHLNISHAHLELPDSLTKLQSLHIVNSYVVIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0327800 | SBH | 1.132693 | 0.075833 | 2.341554 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006080 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005960 | RBH | 0.031155 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006130 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0173500 | RBH | 0.0159685 | 0.031977 | 0.0112915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006290 | RBH | 0.0 | 0.0 | 0.061963 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0150200 | RBH | 0.3528915 | 1.609681 | 0.4504775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006020 | SBH | 0.332341 | 0.245707 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006210 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006090 | RBH | 0.0 | 0.0 | 0.0 |
