Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0005690 | OGI:09028980 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:10212397-10214729 | ||||||||
| Gene Symbol | OsRab11C2 | ||||||||||
| DNA seq | gaaatagaagaaattatcttaaacaatctttcagtaccgtaatatacaggctggtaagaagttcaaggatgcaaacttttgtacatttgtgagtaggagttacagaatataatagcccttctaattagaactcttgctgccaatcagctacagtctgatatccaattacaacaacattttactgggatatgttatgcagtgaaaggtggggaggatctcaaatcctgtcaatttacatggaacaatagtacaccaatgaagaaaccacaaatgcaaaccataaaaccactgacacttcaaagttagctttttcccaacctgggtttaacagccccaaccttcttgatgtaacactaaaatctcacaggcaaccaggttaggcagcaaaagaaagttatccttttaattactcatgatataatcaggtgagcatatggttccttctcatggacataatggatttaggatgaacagcatccagactttttcacagcagaaacatcatctttgccaccaacattgatggtctgtcctcttggtggagcagcagggtcatcgccgatgtcgagggccttcttgctgaccacgcgatagatctgagttagcacctcagtgaaggcactttctacattcatggactccaacgcggacgtttccatgaagaaggtgctttccctctcggcgaagcccttggcgtcctcaaccgatacggccctaaggtgacgcagatcagccttgttgccaacaagcatgatgacgatgtttgcatctgtgtgatcccggagctccttcaaccacctctctacattctcaaaggtgacatggcgtgtcacgtcgtacacgacaagtgcgccaactgcccctcgatagtatgcacttgtaatcgcccgatacctgttgagagagtacagaaggaacttcaaagtccataccgagcactgaaactatcaacatgactgaaatgtcatcaaatacatggagcagattccaaagaaattgatcccaaaggatatgcctaatactccatatcaaatgcatgaagttctttgagacactagggacagcaatttgattgtaaatggcacaagagtaatactgtaaacatcagcatagagctgtaaataaaaaaagaatattcctagtgattctatagttattggacgaccactcatggtatttactatttgaaggatggatggtcaactgccagaaaaggttttatttagagccataagacaaacagatgttgcagcagaacaattttctaaataatgtgaggagacagttggattgaaatcatgtaaatgtccatacgaattatcaaatgccaaatagtacatggcaacaacaggacatcaccaatgcaggtgtagaataaaactgcacgatagcgatgctagaaaataaactagaatctctctcagaacataagtcatagagcaacgtttccttcacaggaagatagcatgccccactggctcacattcaaagataggtaaataaaggattttacatgaaaaacaaaaataatgacgcatgagagagagcataattaagaaaggctatagttttgctgactgtacacgacgtgatgtaaactatccacatatccaatgcatggggcaaaaaaaaaaaaaaacaaagaaatatcaatcttaaaccaatatgctgtgcctactaatcctgaaccacacagaagagagcgcaccagaaacaacctgcgcatttcctaaactatacgcacaaatcgcgcagactgaatcctacagaaaaacattgaatttcctgaagaaacgaagcgtgatcaacctaattggccgcagtgccgaaccaagcaatgctggatgatgaaccgatcagaacagagggcgtgcggcacaacaagagaacgcgagcaagaaaagagagagagagaagggacctcacctctcctggccggcggtgtcccagatctgggccttgacgaccttgtcgtcgacgcggatgctcctggtggcgaactcgacgccgatggtggacttggactcgaggctgaactcgttgcgggtgaagcgggagaggaggttggatttgccgaccccggagtcgccgatgagcaccaccttgaacaggtagtcgtagtcgtcctccgccctgtacgccatcgcctcgccccccgaccacctggccccggacgaagacgatgacgacgacgacgacgactgctcgcaccaccgggggcccgcgcgcgcggccgcaagcgagagcgagaggaggggagggggaagcggaatggcgcgcggggtgcgcgtcctagtatttgagagaataggaaatgcaagagaggtggaggc
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| CDS seq | atggcgtacagggcggaggacgactacgactacctgttcaaggtggtgctcatcggcgactccggggtcggcaaatccaacctcctctcccgcttcacccgcaacgagttcagcctcgagtccaagtccaccatcggcgtcgagttcgccaccaggagcatccgcgtcgacgacaaggtcgtcaaggcccagatctgggacaccgccggccaggagaggtatcgggcgattacaagtgcatactatcgaggggcagttggcgcacttgtcgtgtacgacgtgacacgccatgtcacctttgagaatgtagagaggtggttgaaggagctccgggatcacacagatgcaaacatcgtcatcatgcttgttggcaacaaggctgatctgcgtcaccttagggccgtatcggttgaggacgccaagggcttcgccgagagggaaagcaccttcttcatggaaacgtccgcgttggagtccatgaatgtagaaagtgccttcactgaggtgctaactcagatctatcgcgtggtcagcaagaaggccctcgacatcggcgatgaccctgctgctccaccaagaggacagaccatcaatgttggtggcaaagatgatgtttctgctgtgaaaaagtctggatgctgttcatcctaa
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| Protein seq | MAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSVEDAKGFAERESTFFMETSALESMNVESAFTEVLTQIYRVVSKKALDIGDDPAAPPRGQTINVGGKDDVSAVKKSGCCSS |
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| Function | Ras-related protein RABA1f [UniProtKB/Swiss-Prot:Q9FJH0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0005690 | OsLiXu_09g0005690.01 | Chr09 | 10212397 | 10214729 | - | NAM | ||
| CDS seq | atggcgtacagggcggaggacgactacgactacctgttcaaggtggtgctcatcggcgactccggggtcggcaaatccaacctcctctcccgcttcacccgcaacgagttcagcctcgagtccaagtccaccatcggcgtcgagttcgccaccaggagcatccgcgtcgacgacaaggtcgtcaaggcccagatctgggacaccgccggccaggagaggtatcgggcgattacaagtgcatactatcgaggggcagttggcgcacttgtcgtgtacgacgtgacacgccatgtcacctttgagaatgtagagaggtggttgaaggagctccgggatcacacagatgcaaacatcgtcatcatgcttgttggcaacaaggctgatctgcgtcaccttagggccgtatcggttgaggacgccaagggcttcgccgagagggaaagcaccttcttcatggaaacgtccgcgttggagtccatgaatgtagaaagtgccttcactgaggtgctaactcagatctatcgcgtggtcagcaagaaggccctcgacatcggcgatgaccctgctgctccaccaagaggacagaccatcaatgttggtggcaaagatgatgtttctgctgtgaaaaagtctggatgctgttcatcctaa
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| Protein seq | MAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSVEDAKGFAERESTFFMETSALESMNVESAFTEVLTQIYRVVSKKALDIGDDPAAPPRGQTINVGGKDDVSAVKKSGCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.707793 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0327100 | RBH | 0.000000 | 0.0 | 4.932293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15790 | RBH | 0.000000 | 0.0 | 1.037418 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005750 | RBH | 0.146023 | 3.025522 | 3.042694 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005820 | RBH | 0.0 | 1.650464 | 5.877346 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005950 | RBH | 0.0 | 3.058475 | 8.125780 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005840 | RBH | 0.031845 | 0.134667 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006020 | RBH | 0.0 | 0.000000 | 3.902516 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0170900 | RBH | 0.205636 | 0.723354 | 0.1568765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006180 | RBH | 0.132051 | 0.656727 | 3.276204 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0449200 | SBH | 10.2231165 | 9.9871375 | 22.503311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005950 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005810 | RBH | 0.0 | 4.853377 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026780 | SBH | 0.220485 | 3.196937 | 2.447330 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005780 | RBH | 0.0 | 3.063430 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006090 | RBH | 0.116744 | 0.683649 | 2.181971 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005970 | SBH | 0.162193 | 1.575553 | 7.731903 |
