Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0025700 | OGI:01112290 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:30430551-30431319 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagaacaactatgttttggaaggataaatagatgcatcaacgtctggaatttgcttacacagttttatactcatttgctctgcataaggattgcacagttcaatcacaattcagacaaaattcctggcaaatacagctccatcctaacctttcctaccaagcagaatcagaactacacgtactgctgcaaatcctacaaaatctctgccccatcccagagaaaatagacacaagagaattcctgtatcctgcacccaaagtctcaacagcaaatgcctatcgcttgctgacataccatggatccacaccatcccacaaaattgtaagatttttctttggctagcattcaaagacaaactaaacaccaaagccaatatggtcagcaaaaactggaatgaagatccccactgctccttgtgccctgcactagaatcaacagatcacatcctcctaagatgcaaaaatgccaataacctctgggaaaatttgaacttgctgcagctggccaacaaatccgaatcaagctcggtcttcctacaagcagtcatagacatgaatcactcatcagagggaataaaaccaatttggtttgttacttgcgcttacacgccgtggaaatctcgcaacaacatggtgtttgagggacaatttgacaacctacaatgcatcacgcagcaaatttcagacaccctagaactttggaatctgagaaccaatgaggcaaacagacaaaaaatttacacatggtgtgcgaggctttcctag
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| CDS seq | atggcagaacaactatgttttggaaggataaatagatgcatcaacgtctggaatttgcttacacagttttatactcatttgctctgcataaggattgcacagttcaatcacaattcagacaaaattcctggcaaatacagctccatcctaacctttcctaccaagcagaatcagaactacacagaaaatagacacaagagaattcctgtatcctgcacccaaagtctcaacagcaaatgcctatcgcttgctgacataccatggatccacaccatcccacaaaattgtaagatttttctttggctagcattcaaagacaaactaaacaccaaagccaatatggtcagcaaaaactggaatgaagatccccactgctccttgtgccctgcactagaatcaacagatcacatcctcctaagatgcaaaaatgccaataacctctgggaaaatttgaacttgctgcagctggccaacaaatccgaatcaagctcggtcttcctacaagcagtcatagacatgaatcactcatcagagggaataaaaccaatttggtttgttacttgcgcttacacgccgtggaaatctcgcaacaacatggtgtttgagggacaatttgacaacctacaatgcatcacgcagcaaatttcagacaccctagaactttggaatctgagaaccaatgaggcaaacagacaaaaaatttacacatggtgtgcgaggctttcctag
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| Protein seq | MAEQLCFGRINRCINVWNLLTQFYTHLLCIRIAQFNHNSDKIPGKYSSILTFPTKQNQNYTENRHKRIPVSCTQSLNSKCLSLADIPWIHTIPQNCKIFLWLAFKDKLNTKANMVSKNWNEDPHCSLCPALESTDHILLRCKNANNLWENLNLLQLANKSESSSVFLQAVIDMNHSSEGIKPIWFVTCAYTPWKSRNNMVFEGQFDNLQCITQQISDTLELWNLRTNEANRQKIYTWCARLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0025700 | OsLiXu_08g0025700.01 | Chr08 | 30430551 | 30431319 | + | NAM | ||
| CDS seq | atggcagaacaactatgttttggaaggataaatagatgcatcaacgtctggaatttgcttacacagttttatactcatttgctctgcataaggattgcacagttcaatcacaattcagacaaaattcctggcaaatacagctccatcctaacctttcctaccaagcagaatcagaactacacagaaaatagacacaagagaattcctgtatcctgcacccaaagtctcaacagcaaatgcctatcgcttgctgacataccatggatccacaccatcccacaaaattgtaagatttttctttggctagcattcaaagacaaactaaacaccaaagccaatatggtcagcaaaaactggaatgaagatccccactgctccttgtgccctgcactagaatcaacagatcacatcctcctaagatgcaaaaatgccaataacctctgggaaaatttgaacttgctgcagctggccaacaaatccgaatcaagctcggtcttcctacaagcagtcatagacatgaatcactcatcagagggaataaaaccaatttggtttgttacttgcgcttacacgccgtggaaatctcgcaacaacatggtgtttgagggacaatttgacaacctacaatgcatcacgcagcaaatttcagacaccctagaactttggaatctgagaaccaatgaggcaaacagacaaaaaatttacacatggtgtgcgaggctttcctag
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| Protein seq | MAEQLCFGRINRCINVWNLLTQFYTHLLCIRIAQFNHNSDKIPGKYSSILTFPTKQNQNYTENRHKRIPVSCTQSLNSKCLSLADIPWIHTIPQNCKIFLWLAFKDKLNTKANMVSKNWNEDPHCSLCPALESTDHILLRCKNANNLWENLNLLQLANKSESSSVFLQAVIDMNHSSEGIKPIWFVTCAYTPWKSRNNMVFEGQFDNLQCITQQISDTLELWNLRTNEANRQKIYTWCARLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40050 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013560 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025450 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0025220 | RBH | 0.106311 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024970 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025140 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025300 | RBH | 0.0 | 0.0 | 0.0 |
