Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g40050 | OGI:01112290 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:25360469-25363577 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATCACCAGGGGGAGAGATCTCCCACCTGAAATATATTGAAAAAAAAAGGAAGAAGGGGTACAACCAGAAGCATTACAGCATTAGTCATAGCGAATAGAAGAAGAAAGAAGACTTTTCCAGTTGGTCACAACCGGCCTATCTTCTCTACTGAGGTGCTCAGCCCACAAAGTAGCGTCCTCAATACATTTAGCCACTAACCTTGTCCGGGAGTTAGGGAGCCCCCGGAAAACAACGTCGTGTCTATGGTTCCAAAGTCCCCAGAAACAAAGTAAGAAAAAAACTTGGAAGTGCTTGACAGGCAAGTGGCAGGGAGCAACGAGGTCAGCAAGATCTTGAACATTCGAAACAACAGATGTACGCAAGGCTCTCCAGAATTCCTGAGCGAATTGGCATTGGAGAAAGAGATGAGTTGCAGTTTCGTCAGCACAGTTGCAGACGATGCACCCGGCTGTTGGAACAATGTTCTTCTTGTGCAGATTAGCCTTGGTAGGGAGCCGATCCTTAGCTAGAAGCCAGGCGAAGAATTGTACTCTCGGCGGAGCTCGATTGTCCCAGATGAAGCGCCAGTTCTTGCACAGAGGTAGGCCCATATGAGTAGAAGAATAGATAAACTTTGTGCGAAGGATCCCGGGAGCATCACGCGACGGACATAGATCAGTAGAGTTACTGAGGTAGAAGTTTTGTAGCATCTCTCTCAATCTCGCTAATTGAGTTTCAGCAGTGGATGACAGCCTGGGGGCGAACTGATCTTCAATTGGCTTCGAGAGGAACACCGCAACTGTTGCTTCCCTGTTGAGAGCATGAGAGAACAGGGGAGCAAATCGATCTTTGAAAGTACTCGAACCATACCAACAGTCATGCCAGAACGAAGTGCGTGTGCCATCCCCAACTTGAACGCGCGTTAGGCGCTGGAGAATCGGTAGGAGAGTGGATAGGGAGTCCCAGTGGGGACCCAATTGATTGTCACAAAAGAGAGCAGAGCCAGAATGTTCTTGCCAGATCCACCGTCCCCAAGAGGAGTCTGTCGAATGAAGATGATGAAGTCTTTTTACAAGCAAGGCACAGTTTTGATCATGCATGTTTTTAATCCCTAGACCTCCCACTTCTCTGGCAGTGCACACTTTATCCCAAGCAACAAGGCAGCTAGAGCCACTACAAGAATCATCTCCAGACCAAAGGAAAGCCCTCCGTTTTTTATCAAAAGCTTCAATTGTTCCTTTGGGAAGCAGAAGCGCCGACATTGCATAGACCGGGAGGCTATCAAGAACCGCGTTGATAAGCACAATTCTCTCTGAATAGTTGAGGAGTTTGGCTTGCCAAGAGGAGAGGTAGAAATCAGCTTTAGCTATCATGGGCCGGAGTCCAGAGATCAGCAATGTGGAGTTTGCTATGAGAGAGAGGTAGTCCGAGGTAGGAGAGGGGGAAACTACCAGTCTTGCATTGTAGGATGTTGGCAAGGGCGGTTGTTACCTCATCCGGCACATGCATCGTGACGAGGGTGCTTTTAGAGAAGTTGATATGCAAACCGGTGGCTGCTGCAAAGTGATTTAGACAGGTTTTAAGCGCCGCCAAATCTTGCTCAGTCGCTCTGCAGATGATGATTGTGTCGTCCGCATATTGGAGGGTTGCACAAGGTTGATCCGGATATATAGGATGTTTAATTTCGCCCGAATGTCGGATGAGTTTCTGTAGCACATCAGCGACAAGGATGAACAGATATGGCGACATTGGGTCACCCTGTCGAACTCCTCTTTTGCAGTTGATCCAGTTCCCAGGAACGCCATTGATCATAATTGCTGACTTAGAAGTTTGTAGCAGTCTATTCGTCCAAGATCTCCAGAGGAATGGGAATCCGCGAGCTTGAAGGATTCTGTCCAAGCTATCCCATGCAACTGAATCAAAAGCTTTCGTGAAATCCAACTTTATGACTGCAGCTGCGCATTTTCGTTTGAAACAACATTGCAGAAGCTCACTTGCATAAATGAAGTTCTCCGAGATGCTTCTCCCTCTTAAGGAAACCTGACTGATCCAAGTCGATGAGGGGTGGGAGTTGCCTTTGCATTCTATTCGCCATGACTTTGGCTATTATTTTAACAGAGCAATTTTGGAGGGAGATTGGCCGGTAACCGTCAGGAGTATTTGTTTTGCCCGGTTTTGGGATAAGAACGATGAATGCCCTGTTTATTCTTTCCATGTCCGCAGTTTCGTCATAAAAGCTCTGTAATAGATGAAGAATATCTGGTTTGATCATTGCCCACGCTGCTTGGAAGAAACCTGGTCCAAATCCATCAGGACCAGGGGCACTGTTCTTATCCATATGTTTGATAGCCTGGAAGATCTCTTGTTCAGAGAAAGGTTGAACTAATTCATCAGCATTCGCCATTGCACATCCATGGTAAATAGTATGCAGGTCAAAAGACCATGAAGTCTCAGTGGACGCACCCAAGATGCTATTGTAATAACTGAACATGGTGGTGGCCTTATCAGAGTGTTCAGAGACTTCCATGTCTGTTAATTTGATAGAGCGAATAAAAGTTCTTCGATGGTTCTGAGTAGCATGAGCCTTGAAGAAATGCGTGTTGTCAATACCCAATCTAATTTTCTTTACCTTCCCCCTTTGCTTCCAATACGATGCTTGCATGAGTTTGTACTGAGTGAATTTGTCTTGGACCATTTGCCGCAGCAGACGTTCAGGAGCTGAGAGCTCTCTTAGTTCCTCAAGGAAATCAAACAAATCAATCACGAACTTGCAATCATTGTCGAGAAATCTGCAGGAAGTTCTATTTTTAGTCCAGTTCTTGATCTGTGATCTGGCTTGTTTGAGTTTCCCAGCTAAGTTTGCAGCCCCGTCCGTTGAAATTTGGTCTGCAGACCAACTTGCAAGCGCTGTGGGAAGAAATTGATTGTCTAGAAGATTGGAGTTTTCAAACCGAAAGACCGAAGGCCGAGGAACTCGAGTGGCCGCGGTAATGACCAGAGGAACGTGATCAGAAGTAGTCCTAGTAATGGAATTTAGATGAGAGCTAGGGAAAACGCGGTCCCAGAGCTTGAAATTTGTGACTGCTATTTCATGGGAATACTTGTAATAATGAATAGTTGAGTGCAT
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| CDS seq | ATGCACTCAACTATTCATTATTACAAGTATTCCCATGAAATAGCAGTCACAAATTTCAAGCTCTGGGACCGCGTTTTCCCTAGCTCTCATCTAAATTCCATTACTAGGACTACTTCTGATCACGTTCCTCTGGTCATTACCGCGGCCACTCGAGTTCCTCGGCCTTCGGTCTTTCGGTTTGAAAACTCCAATCTTCTAGACAATCAATTTCTTCCCACAGCGCTTGCAAGTTGGTCTGCAGACCAAATTTCAACGGACGGGGCTGCAAACTTAGCTGGGAAACTCAAACAAGCCAGATCACAGATCAAGAACTGGACTAAAAATAGAACTTCCTGCAGATTTCTCGACAATGATTGCAAGTTCGTGATTGATTTGTTTGATTTCCTTGAGGAACTAAGAGAGCTCTCAGCTCCTGAACGTCTGCTGCGGCAAATGGTCCAAGACAAATTCACTCAGTACAAACTCATGCAAGCATCGTATTGGAAGCAAAGGGGGAAGGTAAAGAAAATTAGATTGGGTATTGACAACACGCATTTCTTCAAGGCTCATGCTACTCAGAACCATCGAAGAACTTTTATTCGCTCTATCAAATTAACAGACATGGAAGTCTCTGAACACTCTGATAAGGCCACCACCATGTTCAGTTATTACAATAGCATCTTGGGTGCGTCCACTGAGACTTCATGGTCTTTTGACCTGCATACTATTTACCATGGATGTGCAATGGCGAATGCTGATGAATTAGTTCAACCTTTCTCTGAACAAGAGATCTTCCAGGCTATCAAACATATGGATAAGAACAGTGCCCCTGGTCCTGATGGATTTGGACCAGGTTTCTTCCAAGCAGCGTGGGCAATGATCAAACCAGATATTCTTCATCTATTACAGAGCTTTTATGACGAAACTGCGGACATGGAAAGAATAAACAGGGCATTCATCGTTCTTATCCCAAAACCGGGCAAAACAAATACTCCTGACGGTTACCGGCCAATCTCCCTCCAAAATTGCTCTGTTAAAATAATAGCCAAAGTCATGGCGAATAGAATGCAAAGGCAACTCCCACCCCTCATCGACTTGGATCAGTCAGCTGCAGTCATAAAGTTGGATTTCACGAAAGCTTTTGATTCAGTTGCATGGGATAGCTTGGACAGAATCCTTCAAGCTCGCGGATTCCCATTCCTCTGGAGATCTTGGACGAATAGACTGCTACAAACTTCTAAGTCAGCAATTATGATCAATGGCGTTCCTGGGAACTGGATCAACTGCAAAAGAGGAGTTCGACAGGGTGACCCAATGTCGCCATATCTGTTCATCCTTGTCGCTGATGTGCTACAGAAACTCATCCGACATTCGGGCGAAATTAAACATCCTATATATCCGGATCAACCTTGTGCAACCCTCCAATATGCGGACGACACAATCATCATCTGCAGAGCGACTGAGCAAGATTTGGCGGCGCTTAAAACCTGTCTAAATCACTTTGCAGCAGCCACCGGTTTGCATATCAACTTCTCTAAAAGCACCCTCGTCACGATGCATGTGCCGGATGAGGTAACAACCGCCCTTGCCAACATCCTACAATGCAAGACTGACTCCTCTTGGGGACGGTGGATCTGGCAAGAACATTCTGGCTCTGCTCTCTTTTGTGACAATCAATTGGGTCCCCACTGGGACTCCCTATCCACTCTCCTACCGATTCTCCAGCGCCTAACGCGCGTTCAAGTTGGGGATGGCACACGCACTTCGTTCTGGCATGACTGTTGGTATGGTTCGAGTACTTTCAAAGATCGATTTGCTCCCCTGTTCTCTCATGCTCTCAACAGGGAAGCAACAGTTGCGGTGTTCCTCTCGAAGCCAATTGAAGATCAGTTCGCCCCCAGGCTGTCATCCACTGCTGAAACTCAATTAGCGAGATTGAGAGAGATGCTACAAAACTTCTACCTCAGTAACTCTACTGATCTATGTCCGTCGCGTGATGCTCCCGGGATCCTTCGCACAAAGTTTATCTATTCTTCTACTCATATGGGCCTACCTCTGTGCAAGAACTGGCGCTTCATCTGGGACAATCGAGCTCCGCCGAGAGTACAATTCTTCGCCTGGCTTCTAGCTAAGGATCGGCTCCCTACCAAGGCTAATCTGCACAAGAAGAACATTGTTCCAACAGCCGGGTGCATCGTCTGCAACTGTGCTGACGAAACTGCAACTCATCTCTTTCTCCAATGCCAATTCGCTCAGGAATTCTGGAGAGCCTTGCGTACATCTGTTGTTTCGAATGTTCAAGATCTTGCTGACCTCGTTGCTCCCTGCCACTTGCCTGTCAAGCACTTCCAAGTTTTTTTCTTACTTTGTTTCTGGGGACTTTGGAACCATAGACACGACGTTGTTTTCCGGGGGCTCCCTAACTCCCGGACAAGGTGGGAGATCTCTCCCCCTGGTGATTAA
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| Protein seq | MHSTIHYYKYSHEIAVTNFKLWDRVFPSSHLNSITRTTSDHVPLVITAATRVPRPSVFRFENSNLLDNQFLPTALASWSADQISTDGAANLAGKLKQARSQIKNWTKNRTSCRFLDNDCKFVIDLFDFLEELRELSAPERLLRQMVQDKFTQYKLMQASYWKQRGKVKKIRLGIDNTHFFKAHATQNHRRTFIRSIKLTDMEVSEHSDKATTMFSYYNSILGASTETSWSFDLHTIYHGCAMANADELVQPFSEQEIFQAIKHMDKNSAPGPDGFGPGFFQAAWAMIKPDILHLLQSFYDETADMERINRAFIVLIPKPGKTNTPDGYRPISLQNCSVKIIAKVMANRMQRQLPPLIDLDQSAAVIKLDFTKAFDSVAWDSLDRILQARGFPFLWRSWTNRLLQTSKSAIMINGVPGNWINCKRGVRQGDPMSPYLFILVADVLQKLIRHSGEIKHPIYPDQPCATLQYADDTIIICRATEQDLAALKTCLNHFAAATGLHINFSKSTLVTMHVPDEVTTALANILQCKTDSSWGRWIWQEHSGSALFCDNQLGPHWDSLSTLLPILQRLTRVQVGDGTRTSFWHDCWYGSSTFKDRFAPLFSHALNREATVAVFLSKPIEDQFAPRLSSTAETQLARLREMLQNFYLSNSTDLCPSRDAPGILRTKFIYSSTHMGLPLCKNWRFIWDNRAPPRVQFFAWLLAKDRLPTKANLHKKNIVPTAGCIVCNCADETATHLFLQCQFAQEFWRALRTSVVSNVQDLADLVAPCHLPVKHFQVFFLLCFWGLWNHRHDVVFRGLPNSRTRWEISPPGD |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g40050 | LOC_Os08g40050.1 | Chr08 | 25360469 | 25363577 | - | MSU_osa1r7 | ||
| CDS seq | ATGCACTCAACTATTCATTATTACAAGTATTCCCATGAAATAGCAGTCACAAATTTCAAGCTCTGGGACCGCGTTTTCCCTAGCTCTCATCTAAATTCCATTACTAGGACTACTTCTGATCACGTTCCTCTGGTCATTACCGCGGCCACTCGAGTTCCTCGGCCTTCGGTCTTTCGGTTTGAAAACTCCAATCTTCTAGACAATCAATTTCTTCCCACAGCGCTTGCAAGTTGGTCTGCAGACCAAATTTCAACGGACGGGGCTGCAAACTTAGCTGGGAAACTCAAACAAGCCAGATCACAGATCAAGAACTGGACTAAAAATAGAACTTCCTGCAGATTTCTCGACAATGATTGCAAGTTCGTGATTGATTTGTTTGATTTCCTTGAGGAACTAAGAGAGCTCTCAGCTCCTGAACGTCTGCTGCGGCAAATGGTCCAAGACAAATTCACTCAGTACAAACTCATGCAAGCATCGTATTGGAAGCAAAGGGGGAAGGTAAAGAAAATTAGATTGGGTATTGACAACACGCATTTCTTCAAGGCTCATGCTACTCAGAACCATCGAAGAACTTTTATTCGCTCTATCAAATTAACAGACATGGAAGTCTCTGAACACTCTGATAAGGCCACCACCATGTTCAGTTATTACAATAGCATCTTGGGTGCGTCCACTGAGACTTCATGGTCTTTTGACCTGCATACTATTTACCATGGATGTGCAATGGCGAATGCTGATGAATTAGTTCAACCTTTCTCTGAACAAGAGATCTTCCAGGCTATCAAACATATGGATAAGAACAGTGCCCCTGGTCCTGATGGATTTGGACCAGGTTTCTTCCAAGCAGCGTGGGCAATGATCAAACCAGATATTCTTCATCTATTACAGAGCTTTTATGACGAAACTGCGGACATGGAAAGAATAAACAGGGCATTCATCGTTCTTATCCCAAAACCGGGCAAAACAAATACTCCTGACGGTTACCGGCCAATCTCCCTCCAAAATTGCTCTGTTAAAATAATAGCCAAAGTCATGGCGAATAGAATGCAAAGGCAACTCCCACCCCTCATCGACTTGGATCAGTCAGCTGCAGTCATAAAGTTGGATTTCACGAAAGCTTTTGATTCAGTTGCATGGGATAGCTTGGACAGAATCCTTCAAGCTCGCGGATTCCCATTCCTCTGGAGATCTTGGACGAATAGACTGCTACAAACTTCTAAGTCAGCAATTATGATCAATGGCGTTCCTGGGAACTGGATCAACTGCAAAAGAGGAGTTCGACAGGGTGACCCAATGTCGCCATATCTGTTCATCCTTGTCGCTGATGTGCTACAGAAACTCATCCGACATTCGGGCGAAATTAAACATCCTATATATCCGGATCAACCTTGTGCAACCCTCCAATATGCGGACGACACAATCATCATCTGCAGAGCGACTGAGCAAGATTTGGCGGCGCTTAAAACCTGTCTAAATCACTTTGCAGCAGCCACCGGTTTGCATATCAACTTCTCTAAAAGCACCCTCGTCACGATGCATGTGCCGGATGAGGTAACAACCGCCCTTGCCAACATCCTACAATGCAAGACTGACTCCTCTTGGGGACGGTGGATCTGGCAAGAACATTCTGGCTCTGCTCTCTTTTGTGACAATCAATTGGGTCCCCACTGGGACTCCCTATCCACTCTCCTACCGATTCTCCAGCGCCTAACGCGCGTTCAAGTTGGGGATGGCACACGCACTTCGTTCTGGCATGACTGTTGGTATGGTTCGAGTACTTTCAAAGATCGATTTGCTCCCCTGTTCTCTCATGCTCTCAACAGGGAAGCAACAGTTGCGGTGTTCCTCTCGAAGCCAATTGAAGATCAGTTCGCCCCCAGGCTGTCATCCACTGCTGAAACTCAATTAGCGAGATTGAGAGAGATGCTACAAAACTTCTACCTCAGTAACTCTACTGATCTATGTCCGTCGCGTGATGCTCCCGGGATCCTTCGCACAAAGTTTATCTATTCTTCTACTCATATGGGCCTACCTCTGTGCAAGAACTGGCGCTTCATCTGGGACAATCGAGCTCCGCCGAGAGTACAATTCTTCGCCTGGCTTCTAGCTAAGGATCGGCTCCCTACCAAGGCTAATCTGCACAAGAAGAACATTGTTCCAACAGCCGGGTGCATCGTCTGCAACTGTGCTGACGAAACTGCAACTCATCTCTTTCTCCAATGCCAATTCGCTCAGGAATTCTGGAGAGCCTTGCGTACATCTGTTGTTTCGAATGTTCAAGATCTTGCTGACCTCGTTGCTCCCTGCCACTTGCCTGTCAAGCACTTCCAAGTTTTTTTCTTACTTTGTTTCTGGGGACTTTGGAACCATAGACACGACGTTGTTTTCCGGGGGCTCCCTAACTCCCGGACAAGGTGGGAGATCTCTCCCCCTGGTGATTAA
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| Protein seq | MHSTIHYYKYSHEIAVTNFKLWDRVFPSSHLNSITRTTSDHVPLVITAATRVPRPSVFRFENSNLLDNQFLPTALASWSADQISTDGAANLAGKLKQARSQIKNWTKNRTSCRFLDNDCKFVIDLFDFLEELRELSAPERLLRQMVQDKFTQYKLMQASYWKQRGKVKKIRLGIDNTHFFKAHATQNHRRTFIRSIKLTDMEVSEHSDKATTMFSYYNSILGASTETSWSFDLHTIYHGCAMANADELVQPFSEQEIFQAIKHMDKNSAPGPDGFGPGFFQAAWAMIKPDILHLLQSFYDETADMERINRAFIVLIPKPGKTNTPDGYRPISLQNCSVKIIAKVMANRMQRQLPPLIDLDQSAAVIKLDFTKAFDSVAWDSLDRILQARGFPFLWRSWTNRLLQTSKSAIMINGVPGNWINCKRGVRQGDPMSPYLFILVADVLQKLIRHSGEIKHPIYPDQPCATLQYADDTIIICRATEQDLAALKTCLNHFAAATGLHINFSKSTLVTMHVPDEVTTALANILQCKTDSSWGRWIWQEHSGSALFCDNQLGPHWDSLSTLLPILQRLTRVQVGDGTRTSFWHDCWYGSSTFKDRFAPLFSHALNREATVAVFLSKPIEDQFAPRLSSTAETQLARLREMLQNFYLSNSTDLCPSRDAPGILRTKFIYSSTHMGLPLCKNWRFIWDNRAPPRVQFFAWLLAKDRLPTKANLHKKNIVPTAGCIVCNCADETATHLFLQCQFAQEFWRALRTSVVSNVQDLADLVAPCHLPVKHFQVFFLLCFWGLWNHRHDVVFRGLPNSRTRWEISPPGD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29920 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013560 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025310 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0396300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0025090 | SBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0425000 | RBH | 0 | 0 | 0.0261085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024510 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024660 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025570 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024850 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025010 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025170 | SBH | 0.0 | 0.0 | 0.0 |
