Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0015560 | OGI:04049310 | 6/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:21540742-21544613 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgaaaagagcgatcccctcccgcgtctttcaaacggagcccgcgccccggattcccctccattcccgggggtttccagattcccagcgagggaagaagcaagcaaaaaaaaaaaaaaaaaaaaaaacggaggcgagcgcgagcgctgcgcatcccagatggacggcggatagggtgccagcgccacccgcctcgccgaatccgggccgtccattcctccgctcggtcgggcgccccgttaagcctgagccccacccaccccccacccccgaaccctcgccctcctcctcacccctcgcaccccctccacctcgccgccgccgccgactcgccggggctcgccgccaccgttggtgggggggagctcgacctcctcgccccacgcgcgcgtccggacgccgtcgttctgggcgcgggagagatccgtccgtcgccccccgctgggcttgcgccatcctctcgccgggtaagccctaggtttttttttttttttggtccgatcgattccgccgcgctcctagccgcgggtgaggcaggaatcggggtggttgcggggggctcgtcgtgcggtcgagggatttggttgttcctagtaggaggggttgtacttgttcatcccgtcgatccagtggaggcgcgtgggagatctcggttgggtgtttccgtgggctccgtgggttgccgctcgcggtgcagcggcgggatgtggatggggatggggatggcgtggtgggccgtaggtgcgagcaaccctagacggatttttttttttgtggccattttagggtttacgggaatggatttttttttttaccgaacaagagatgtactctgaaaattgctgtcttttcgtagcgaggggcctataggatcattgaagccttagggacttagggtttgggctgcttgcagctgtatttctcatttgtaaacattagacttccgtgtctgctgtgggaggatgaaagaattgacttgggagctgagttctattaggttcactggttttgtggagtaatgtttggaaataatctgagggagtataaggctgctccatcgcagtgccacgtgtagcattcggttcgaatttgtcatttgtgtaatgtttcttagcagttacttcttattttggaagttggttctcccaaaaaacttgtgtcctatctggtttatttgaaggtatcttaggacaacaagacgattagatgcaaaagttgaaagtaggggcattaacataaaccttgttgggtgcagaatatggtaattttatacgcattaattgcgtacgtaccgtttccacaaaattgttcatgtagtaataaataactgccaaagaaagctgatgtgactccatgaatgaatgtatactacgctatatctgctgtattgattgctgtagcaatccattcgttttcagtattgtgttggtgcattgtttgcaaaagcaaatcatatttattaatttttcattattgagttgcagcttgcaaatgtgtatgtacatattatgagagaaagtaggcatgtctgaactctcaacatgattattgtcataagaaaaatgttatcgttgtttttctctctttttgggtaactgtttgtgtttatggttatcagttctatattataaatttgttcaggctggaattaggctgaccaaatccttgttttgaaattcgaattatattgatatatatcttgtacggtcattgcattttttattgttttgctttataactatatataggctggcttcattacgtactccctccgtcccaaaaaaacttaacctaggcaaggatgtgacatctcctagcacaataaatctggacagccctttgtccagattcgttgtactagaaaatgtcacatcccttcctaggtttagtttttttgggacggagggagtaaacttgtctatgttaaagtttggaatatccaaaggtcctcaacctagtatgtactattttcttgaccttaacatggaactatacatgaccttttttttttcctattttactgaataagatgattgtttgtttgcggtttcctaaatgtacttaactgttggtattgttgtgaagatgtgatggaattagtattgtggtattacatctatgtggtaaAcagctttttgggtttgcaggaatgaagtacataaatatctgtttggtgctgtggtacaacaatgtaaatagtttattgcagtgacaatgttgcactgttgcatgcatttttcttaggatcatggttgtctgttgccttgttatgccattaacaaatctagaataagtgaagcagcttaaagttatgttctcgtgctcttaagagcaaacatttaagaggtataatagcattctgtgttcaaactatattttagaacctttgcccttgcttaaatagttttatttataagagatgttgaggagcaaacactgcatatctttacacttcacatacgaatatactttgtgctttgctgcctggattactgcatctactttttTgttaaattcaatttcttgcataaaatggggataagttaactgagagcttcagtagactagtacatcacaacctaggtaattggaagaattagctactatgattctttgttgaaacttaggtttagtaaaatagagtaaccagataataggttctatcaaatggaaactggagaaggtacttccatagtcgtatcattgttaatttcaccctcagtataatattagtgttgaatatatgaaagtttgctttcgatgatttcaggtgatttgagacaatcaagatggctttttcatcagttttcaggagaggaaatgtcaaagaattgatctcaaatgtttcggtctacactagcgcaacaggtaatggctttggctttaggcagtctgagactcttgactgatttgagtctgtatttgtgctattctgaataaggtgcttggctaattgaatgacaaaatatacctcattgcagagtcatctggaggattgagcttgatttttaagcgttgggccaccaaaaagacagctggatcaacaaaaaatggccgtgactctaaccctaagtatttgggtgttaaaaagtttggcggagaggtacaatcttgtgatctgtcatatgactttcatgttttttattgtttatgacagtacaaagtactttctttaatcacgtaaaagtaatcagacttcagagatttgtgtgtcccttctgatcccgtacctgaactcctgaagcaacttgtcatttttgttattagaacaaaaaggtgaaaaagatctaaactgttcctgaacatcagcatttgcatcatttttcagaaagtggagccaggaaacatcatcatccgccaaagaggaacccgcttccatcctgggaactacgttggcatggggaaggaccatactctcttctgtctgaaagaaggacatgtgcgattcgagcgcaacaagctgactggcaggaaatgggttcatgttgatcctgttgctgggcatgtgctccaccctgtctacgccagtgattccacccctgcagctgaaatggagccattgtaatggctttacatggaatgaagtaacatatgttgctaacagctttcgtccttgccttgagagtgacttctctaaagaaacttattgcgattaagaggcttctgggttgaatttgcttgcaataaggaacctaaccatcatgttcagaacccttttatttttggttcttgctgtggcttaaagttgatttttttaagtatcctttgtgatttgtggcatgaaggttgacaaacctacatgatttataaacacacataaattctaaaaatgttgcttgggccgggaaagtcaagatgcttatttttcttc
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| CDS seq | atgcgaaaagagcgatcccctcccgcgtctttcaaacggagcccgcgccccggattcccctccattcccgggggtttccagattcccagcgagggaagaagcaagcaaaaaaaaaaaaaaaaaaaaaaacggaggcgagcgcgagcgctgcgcatcccagatggacggcggatagggtgccagcgccacccgcctcgccgaatccgggccgtccattcctccgctcggtcgggcgccccgttaagcctgagccccacccaccccccacccccgaaccctcgccctcctcctcacccctcgcaccccctccacctcgccgccgccgccgactcgccggggctcgccgccaccgttggtgggggggagctcgacctcctcgccccacgcgcgcgtccggacgccgtcgttctgggcgcgggagagatccgtccgtcgccccccgctgggcttgcgccatcctctcgccgggtgatttga
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| Protein seq | MRKERSPPASFKRSPRPGFPSIPGGFQIPSEGRSKQKKKKKKKRRRARALRIPDGRRIGCQRHPPRRIRAVHSSARSGAPLSLSPTHPPPPNPRPPPHPSHPLHLAAAADSPGLAATVGGGELDLLAPRARPDAVVLGAGEIRPSPPAGLAPSSRRVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0015560 | OsLiXu_08g0015560.01 | Chr08 | 21540742 | 21544533 | + | NAM | ||
| CDS seq | atgcgaaaagagcgatcccctcccgcgtctttcaaacggagcccgcgccccggattcccctccattcccgggggtttccagattcccagcgagggaagaagcaagcaaaaaaaaaaaaaaaaaaaaaaacggaggcgagcgcgagcgctgcgcatcccagatggacggcggatagggtgccagcgccacccgcctcgccgaatccgggccgtccattcctccgctcggtcgggcgccccgttaagcctgagccccacccaccccccacccccgaaccctcgccctcctcctcacccctcgcaccccctccacctcgccgccgccgccgactcgccggggctcgccgccaccgttggtgggggggagctcgacctcctcgccccacgcgcgcgtccggacgccgtcgttctgggcgcgggagagatccgtccgtcgccccccgctgggcttgcgccatcctctcgccgggtgatttga
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| Protein seq | MRKERSPPASFKRSPRPGFPSIPGGFQIPSEGRSKQKKKKKKKRRRARALRIPDGRRIGCQRHPPRRIRAVHSSARSGAPLSLSPTHPPPPNPRPPPHPSHPLHLAAAADSPGLAATVGGGELDLLAPRARPDAVVLGAGEIRPSPPAGLAPSSRRVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0015560 | OsLiXu_08g0015560.02 | Chr08 | 21541037 | 21544533 | + | NAM | ||
| CDS seq | atggctttttcatcagttttcaggagaggaaatgtcaaagaattgatctcaaatgtttcggtctacactagcgcaacagagtcatctggaggattgagcttgatttttaagcgttgggccaccaaaaagacagctggatcaacaaaaaatggccgtgactctaaccctaagtatttgggtgttaaaaagtttggcggagagaaagtggagccaggaaacatcatcatccgccaaagaggaacccgcttccatcctgggaactacgttggcatggggaaggaccatactctcttctgtctgaaagaaggacatgtgcgattcgagcgcaacaagctgactggcaggaaatgggttcatgttgatcctgttgctgggcatgtgctccaccctgtctacgccagtgattccacccctgcagctgaaatggagccattgtaa
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| Protein seq | MAFSSVFRRGNVKELISNVSVYTSATESSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYASDSTPAAEMEPL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0015560 | OsLiXu_08g0015560.03 | Chr08 | 21544166 | 21544613 | + | IsoSeq | ||
| CDS seq | atgttgctaacagctttcgtccttgccttgagagtgacttctctaaagaaacttattgcgattaagaggcttctg |
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| Protein seq | MLLTAFVLALRVTSLKKLIAIKRLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.118086 | 3.021869 | 3.715578 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008520 | RBH | 0.000000 | 0.625984 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0305600 | SBH | 4.827434 | 14.2017075 | 10.6131765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015340 | SBH | 0.430481 | 3.429292 | 3.021912 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0327800 | RBH | 7.8966425 | 20.0572235 | 18.137907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014810 | SBH | 1.191718 | 0.689922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014970 | SBH | 0.769244 | 9.563818 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
