Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0007240 | OGI:08019850 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:7950138-7955072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcctgtagtaacgaaacaagcagagagagagagagagaggggagagagataaataatatacagaaatgagcaggtcgagctcgagcatggccaccgtcctcatggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccacctgcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccgccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacggtgggatcgggaaagcatccggttgcgagataggttacctgttcacttatagcgatgatctccccgcccagaaaacccttggatatactttcgacacagctagctccctcatcaatcacataaagctttaataatccagctatatatatagccttccacttccatgcatgctctctagctacctactaagtggaagtacattattttatttattatacttgttgttaattcccatgatcgattagtggtgttgtccacgatttttggtaacattgtttttctcaattttctatttcatatattcccaactctcaattctacattatatatcattttttcattcaacttcatacatacaattcctcatttcttatatataggccttacgctaaattttttttggatacacaccaccgtcgattatatcgtgcatacttttgtatttcaattaattaattgtgacacttgcttcccacacattgatcgcatgcacgccacatttgtaacattgttatcaaatttcggaaataaatttatctatcgtgtgaattatttcagcttgcatgaatctttctttttatattacacaacctttttctggtcaaaacaaactacacaaaaagatgacaaccaaaatatgttgatatattattaggagtatcctgattcacaccaatgctaaaacaaaaacataaaattacaatagaaaaatgtaagtaaacatcaaggctagagctaggcatttaatgctaaaaataaatgtcaatgtgtagctgtgtgaaccaaaatagaaaagagaaaacagatagttagttattgattgtccttgttcctgtagagaaacttgtggagagtatgcgtaccgggtaccgacacggcctccatattcgactagagataggagtgggccggatccatctattatgtactagagtgggctgtctggcttgttttctactttgtaaccctgccccccaacatatataaggcgggcaatgagcccctacaagggcatcagcacggataaccacaatcagatcatcagatcaatatacacctgacggatacaaatccccaaacaggtgtagggttttacctctcatcgagagggcctgaacctgtctaaattcttgtcttcgcatccatccacttttatgtctcctgcgataccctttttcatgtttccgaattccagtttaaacagttggcgcgacaggtaggggaagcgttgaattatccatcaagaagtgcgatggaaacaacttcaggaatcaaaggcattgtttttgctcgagggcaatctcaatgagatcgatgattctaatctctgacgtcgattggtttgtcgtttcaatctatatgaaatcttttttgtcctgaaatactgccagggctttgccgagcagtgtaattttatataactcaaaaaatatttacaaagttacagtcgaaggaactaaataaaattataaagcttgcaaccaatcaaaaacaatttgctttaagggatccttcattctgcacatatatagaagaacttctttcacaatctatataatattattagcttgatttataatcatggattgatctgtcgtacgatgtcttctttgcatgcatgtacgggtggctgatgaggtccatgggccgccgaaccagcacgtctgcccgggagggaaagcaaagtcggtgatgcccgaaacgaatcccatcgcactagtcggagaaaaacatggcgcaacccctacctgatgcgccaactgtcaaaacaagattccggcaatactaaaaggggtagcaatcaagctggaaaagtggataggttaggacgtaggaggcaaaggtttatacacccggggaattattccaccgagtgtattattgatctgatgatctgggagaaaagttatgcccctaggtacacttgcacccgaccttatatagggggaggagccaagattacaatgtacagcccatatggcttacgtactaggctaacgaatatgtattacaactgtaactaactagcactactggatatttcattgacatacaagttaacataattcccgagtcatttcctaaatatattctatctgtacaagctatcccctataaccagtcggatatacgtgccatgtgggtatgtggtacccaactacccataatctccactctgtgtgtaagatgaatcccttcatttgtaggagtcaagtcactatctttcttcttgtgatttcttctagcagtctttgtcacatccttattttcgtaataggatttataaattatttaataaattattattaaaatttatattaaatgtacattaataaacaagtgaagttaaatgtgggaaataaaatttcctaaatataaagcatggatggattaaatttttattaaattctacatggttaattatactctctgaaattttctcggattttttagagctcaattactaattttaataatacaaagaacattttaggaattatttaaatattaaattagtcattaaatgatcttatcttaagtttgttaaatactctaagtgtccaagcagttgcgagatttttcttgaacatatttcagtatttgaagtatttttaacaattcaaatatcatttcagtgattaatttagttggaaaagtaattaaaatcctttccaaagctcaggtcttaatatggcccatctctctccttcagcccagccgatccagcagcctctttctctctgtcgaagtctgctttgggcctgtttgggggagctttagattctgagaagcagctgtttggtagccagcttctgagaatgtggaaaagctctaaaacccagcttctccagcttttggcttcttagttcatttttcagaatctataactacagattctcagaagctgtggactgtttgaggcagcttctaacagaagcagcttttgggaaaagctgcagctgggagaagctcccgtaaaccgggcatttgcttccctctttaatcaggccttggaagatcaagcccagctgaaagtctatactttttccctccagctacagtgtcgtcttccagctccagatagagcccgtgcagctgccgagacgctgccgtttcctccgcccgattcgctcgattctctcagccgtttcttgaattggttctcttccgtttccctagactttatcccttttaattcgacatggaatcgagctcggattgagtttatctctgcaaaaacaaaccctaattttccttcaacgaatccatccgttcccgagccgatctttctttcccacgcctataaataaagtcccctccctctcctctttcagccgccacctctccctatctccgccgtcgcttgtagcgctaccgccgcgttcgccttctcagtctaccgccggccgccgctccagccacatctcgccgtcgccctggccgtcctcggtcttagctgcttcctccctcggctccgcaaggtcaagagcaagcccgacagccatcttcccgaagccgaaacccattggaatcccctcatcaacgtgaacccgatctactccacctccggtcgagccccgtcgatgactccgtggtggtcggttttcgccgtcgtcttcctcagcatcgcagcgccaagctgaagcccggccaccggttttccttcgctgaaaacgtttggcttataccccagttgagctgcctgtgggagtggagccgaagcttcgctagaccgtaattccgccgcagcttttcttttcttttgtaagtatgtaacgatattattatgatggattggtatattaaattatcagtttatgtacctcagctgattcctggacgaggattttatgcacaaataagttcagaaattactaggaaatttccggcatgacggtcttgctgctccttttcatcttatgattccatccagttgtgttaccacacgacaggatatggacctgttctgaaacaacagtttcgcagtataatttaattcgttactcctttctataaaacgattagattaatgggcgcaccttttttccatatcctacacggcctgttgtctttgtgtttgatctgagtgaactaatttgattactctctacgatctcaataaccatgaaatggtcatctctgctcatgatgaatgggtttactgtatcttcctacttcccccatcttaatcgaattgcttgacttacggcctcttcttgcacctaatccacaatgaatgtatgtcaggatcccgggtgggccgcacacgggctggtcagcccatcgccaagaggcccaagcaaacggaagggagcagcatataa
More
|
||||||||||
| CDS seq | atgagcaggtcgagctcgagcatggccaccgtcctcatggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccacctgcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccgccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacggtgggatcgggaaagcatccggttgcgagataggatcccgggtgggccgcacacgggctggtcagcccatcgccaagaggcccaagcaaacggaagggagcagcatataa
More
|
||||||||||
| Protein seq | MSRSSSSMATVLMVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRKVQGGAGKGDPNLNACVDDFSVAAGENITREALQSLGRLAAAGNGKRSKEDLENAQKWIKGVEKPYNGGIGKASGCEIGSRVGRTRAGQPIAKRPKQTEGSSI |
||||||||||
| Function | Uncharacterized protein Os08g0218700/LOC_Os08g12160 [UniProtKB/Swiss-Prot:Q6YUE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0007240 | OsLiXu_08g0007240.01 | Chr08 | 7950204 | 7955072 | + | NAM | ||
| CDS seq | atgagcaggtcgagctcgagcatggccaccgtcctcatggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccacctgcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccgccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacggtgggatcgggaaagcatccggttgcgagataggatcccgggtgggccgcacacgggctggtcagcccatcgccaagaggcccaagcaaacggaagggagcagcatataa
More
|
|||||||
| Protein seq | MSRSSSSMATVLMVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRKVQGGAGKGDPNLNACVDDFSVAAGENITREALQSLGRLAAAGNGKRSKEDLENAQKWIKGVEKPYNGGIGKASGCEIGSRVGRTRAGQPIAKRPKQTEGSSI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0007240 | OsLiXu_08g0007240.02 | Chr08 | 7950138 | 7950986 | + | IsoSeq | ||
| CDS seq | atgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccacctgcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgt
More
|
|||||||
| Protein seq | MCGRCEGGEASGGAATCGGARGGALRGRGSVRPLLLRHRPAGRPRRLQLLLRPSPPLRCLLRGQPGEGRRGGRHHPEHQPLGLRRPIAQGPGRGRQGGPEPERLR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.952752 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0219100 | SBH | 0.0 | 0.0 | 7.908713 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12230 | SBH | 0.0 | 0.0 | 2.028766 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0219100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007190 | SBH | 0.0 | 0.0 | 8.802850 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007260 | SBH | 0.0 | 0.0 | 17.255886 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007360 | SBH | 0.0 | 0.0 | 28.594521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007210 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007180 | SBH | 0.195124 | 0.0 | 27.977495 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0115700 | SBH | 0.00379 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007140 | SBH | 0.0 | 0.0 | 18.916742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0111000 | SBH | 0 | 0 | 0.0127395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006760 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006910 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006770 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007410 | SBH | 0.0 | 0.0 | 4.891907 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006820 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007010 | RBH | 0.0 | 0.076214 | 6.725560 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007010 | SBH | 0.0 | 0.0 | 85.886208 |
