Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g12230 | OGI:08019850 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:7203552-7205848 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAACTTGTATGTCAAGAAAATATCCAATAGTGCCAGTTAGTTACAGTTGTAATACATATTCGTTAGCCTAGTACGTAAGCCATATGGGCTGTACATTGTAATCTTGGCTCCTCCCCCTATATAAGGTCGGGTCCAAGTGTACCTAGGGGCATAACTTTTCTCCCAGATCATCAGATCAATAATACACTCGGTGGAATAATTCCCCGGCTGTATAAACCTTTGCCTCCTACGTCCTAACCTATCCACTTTTCCAGCTTGATTGCTACCCCTTTTAGTATTGCCGGAATCTTGTTTTGACAGTTGGCGCGTCAGGTAGGGGTTGCGCCATGTTTTTCGCCGACTAGTGCGATGGGATTCATTTCGGGCATCACCGACTTCGCTTTCCCTCCCGGGCAGACGTGCTGGTTCGGCGGCCCATGGACCTCATCAGCCACCCGTACATGCATGCAAAGAAGACATCGTACGACAGATCAATCCATGATTATAAATCAAGCTAATAATATTATATAGATTGTGAAAGAAGTTCTTCTGTATATGTGCAGAATGAAGGATCCCTTAAAGCAAATTGTTTTTGATTGGTTGCAAGCTTTATAGTTTTATTTAACTCCTTCGACTGTAACTTTGTAAATATTTTTTGAGTTATATAAAATTACACTGCTCGGCAAAGCCCTGGCAGTATTTCAGGTCAAAAAAGATTTCATATAGATTGAAACGACAAACCAATCGACGTCAGAGATTAGAATCATCGATCTCATTGAGATTGCCCTCGAGCAAAAACAATGCCTTTGATTCCTGAAGTTGTTTCCATTGCACTTCTTGATGGATAATTCGACGCTTCCCCTACCTGTCGCGCCAACTGTTTAAACTGGAATTCGGCAATATGAAAAAGAGTATCGCACGAGACATAAAAGTGGATGGATGTGAAGACAAGAATTTAGACAGGTTCAGGCCCTCTCGATGAGAGGTAAAACCCTACACCTGTTTGGGGATTTGTATCCGCCAGGTGGATATTGATCTGATGATCTGATTGTGGTTATCCGTGCTGATGCCCTTGTAGGGGCTCATTGCCCGCCTTATATAGGTTGGGGGGCAGGGTTACAAAGTAGAAAACAAGCCAGACAGCCCACTCTAGTACATAATAGATGGATCCGGCCCACTCCTATCTCTAGTCGAATATGGAGGCCGTGTCGGTACCCGGTACGCATACTCTCCACAAGTTTCTCTACAGGAACAAGGACGATCAATAACTAACTATCTGTTTTCTCTTTTCTATTTTGGTTCACACAGCTACACATTGACATTTATTTTTAGCATTAAATGCCTAGCTCTAGCCTTGATGTTTACTTACATTTTTCTATTGTAATTTTATGTTTTTGTTTTAGCATTGGTGTGAATCAGGATACTCCTAATAATATATCAACATATTTTGGTTGTCATCTTTTTGTGTAGTTTGTTTTGACCAGAAAAAGGTTGCTTAAAATAAAAAGAAAGATTCATGCAAGCTGAAATAATTCACACGATAGATAAATTTATTTCCGAAATTTGATAACAATGTTACAAATGTGGCGTGCATGCGATCAATGTGTGGGAAGCAAGTATCACAATTAATTAATTGAAATACAAAAGTATGCACGATATAATCGACGGTGGTGTGTATCCAAAAGAAATTTAGCGTAAGGCCTATATATAAGAAAGAACTGAGGAATTGTATGTATGAAGTTGAATGAAAAAATGATATATAATGTAGAATTGAGAGTTGGGAATATATGAAATAGAAAATTGAGAAAAACAATGTTACCAAAAATCGTGGACAACACCACTAATCGATCATGGGAATTAACAACAAGTATAATAAATAAAATAATGTACTTCCACTTAGTAGGTAGCTAGAGAGCATGCGTAGACCCAGAGGTTGGTGCTTAGGATGGTGGCGGCCACCTCGGCGACCTTCACCTGGTTGCCCTCGAAGAAGGCAGCGTAGGGGAGGAGATGGTCATAGCAGAAGCTGGAGCCGTCGCGGTCGGCCTGCAGGGCGGTGTCGCAGCAGGAGCGGACGAACGCTGCCGCGTCCGCGGAGGGCGCCTCCCCTGGCGCCGCCGCAGGTGGCAGCACCACCACTGGCTTCTCCTCCTTCGCAGCGGCCGCACATGGTGGGGATAAGCCGCCGGCGCTGACGACCATCAACACCACGAGGACGGTGGCCATGCTCGAGCTCGACCTGCTCATTTCTGTATATTATTTATCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTGCTTGTTTCGTTACTACAGGAT
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| CDS seq | ATGAGCAGGTCGAGCTCGAGCATGGCCACCGTCCTCGTGGTGTTGATGGTCGTCAGCGCCGGCGGCTTATCCCCACCATGTGCGGCCGCTGCGAAGGAGGAGAAGCCAGTGGTGGTGCTGCCACCTGCGGCGGCGCCAGGGGAGGCGCCCTCCGCGGACGCGGCAGCGTTCGTCCGCTCCTGCTGCGACACCGCCCTGCAGGCCGACCGCGACGGCTCCAGCTTCTGCTATGACCATCTCCTCCCCTACGCTGCCTTCTTCGAGGGCAACCAGGTGAAGGTCGCCGAGGTGGCCGCCACCATCCTAAGCACCAACCTCTGGGTCTACGCATGCTCTCTAGCTACCTACTAA |
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| Protein seq | MSRSSSSMATVLVVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYACSLATY |
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| Function | Uncharacterized protein Os08g0218700/LOC_Os08g12160 [UniProtKB/Swiss-Prot:Q6YUE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g12230 | LOC_Os08g12230.1 | Chr08 | 7203552 | 7205848 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGCAGGTCGAGCTCGAGCATGGCCACCGTCCTCGTGGTGTTGATGGTCGTCAGCGCCGGCGGCTTATCCCCACCATGTGCGGCCGCTGCGAAGGAGGAGAAGCCAGTGGTGGTGCTGCCACCTGCGGCGGCGCCAGGGGAGGCGCCCTCCGCGGACGCGGCAGCGTTCGTCCGCTCCTGCTGCGACACCGCCCTGCAGGCCGACCGCGACGGCTCCAGCTTCTGCTATGACCATCTCCTCCCCTACGCTGCCTTCTTCGAGGGCAACCAGGTGAAGGTCGCCGAGGTGGCCGCCACCATCCTAAGCACCAACCTCTGGGTCTACGCATGCTCTCTAGCTACCTACTAA
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| Protein seq | MSRSSSSMATVLVVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYACSLATY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.028766 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0219100 | RBH | 0.0 | 0.0 | 7.908713 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12160 | RBH | 0.0 | 0.0 | 5.387980 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0219100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007190 | RBH | 0.0 | 0.0 | 8.802850 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007260 | RBH | 0.0 | 0.0 | 17.255886 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007360 | RBH | 0.0 | 0.0 | 28.594521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007210 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007140 | SBH | 0.438465 | 0.0 | 48.136806 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0115300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007140 | SBH | 0.0 | 0.0 | 18.916742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0108600 | SBH | 0.001924 | 0 | 0.0015675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006790 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006770 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007410 | SBH | 0.0 | 0.0 | 4.891907 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006820 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007160 | SBH | 0.0 | 0.082661 | 8.816690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007010 | SBH | 0.0 | 0.0 | 85.886208 |
