Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0006370 | OGI:08015550 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:6085183-6085386 | ||||||||
| Gene Symbol | SHR5 | ||||||||||
| DNA seq | atgcatgatgccgcagcggccgcgctggacgccatgttcgggcagtgggggctgaggacgtcgtattgggacgccacctgggagccctgcagcggccgtgccatagacatcactgccctagatggtaaccctcacatgaaattgggaatcaagtgcgactgctcctacaacaacaacaccgtctgccacatcaccgagttgtaa |
||||||||||
| CDS seq | atgcatgatgccgcagcggccgcgctggacgccatgttcgggcagtgggggctgaggacgtcgtattgggacgccacctgggagccctgcagcggccgtgccatagacatcactgccctagatggtaaccctcacatgaaattgggaatcaagtgcgactgctcctacaacaacaacaccgtctgccacatcaccgagttgtaa |
||||||||||
| Protein seq | MHDAAAAALDAMFGQWGLRTSYWDATWEPCSGRAIDITALDGNPHMKLGIKCDCSYNNNTVCHITEL |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 [UniProtKB/Swiss-Prot:C0LGH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0006370 | OsLiXu_08g0006370.01 | Chr08 | 6085183 | 6085386 | + | NAM | ||
| CDS seq | atgcatgatgccgcagcggccgcgctggacgccatgttcgggcagtgggggctgaggacgtcgtattgggacgccacctgggagccctgcagcggccgtgccatagacatcactgccctagatggtaaccctcacatgaaattgggaatcaagtgcgactgctcctacaacaacaacaccgtctgccacatcaccgagttgtaa
More
|
|||||||
| Protein seq | MHDAAAAALDAMFGQWGLRTSYWDATWEPCSGRAIDITALDGNPHMKLGIKCDCSYNNNTVCHITEL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0202300 | SBH | 1.291855 | 0.929487 | 0.530938 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10330 | SBH | 0.039552 | 0.302178 | 0.266092 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0201500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006390 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0089700 | SBH | 0.0527565 | 0.0580075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0092900 | RBH | 0.018507 | 3.182619 | 0.168963 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006100 | RBH | 0.0 | 0.000000 | 0.0 |
