Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0002650 | OGI:08005730 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:2171309-2172810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgctcatattcatctcaggtaccatcaagtatgcttgcagaacatcggcactcatgtttactgctgaacaaacaacacctgggagtaatcttggcatgcaggcaaagggttggtcagctaattggaaacattattcgactaataattggatgatgaatgaggtgcacacttacaacgaacttttgtgggaagccaacgcaggctggaccttatacatggccttcctgatggatatgacaccgctgatatctaggcctgaaacctattcactgcaagggctcctgtcgaaggaacaccgagtctatgtctcttacaagctagctgagctccagctctcgattgtgtatgactacttctacaccaagcttggagtgtattttgagcccgaggaacgactaaatggtcgcttcgcccagcttgctacattgggctccccctttgcagctacgatagagccgatattgttgtgtcttacatattgctaagtggagctttcattctagagatactctctgtttttattgttgtctcatcattctgggcatacttcatggcaactgtatctgatttcctttgtactagatgtcatgatgtgatcttcagcatcgtcaagcttgtccatccagagagcaaaccacaatggtcccaaaagttggcacagtacaacctcatcatcggatgtataaagcagaagagagcagcagctggcagctgtttactgaaatgcatgaagcgtgtgatcggcatccagcccagcactatgactcatgtcgacatctctcatgagctgaagaagctcgtccttgataagctactacaggttggaagcagattgcatccagatgatgtgtgggacatcagcaaattcaccggccaatgggcaaagttggagctcatgaggagcaaactgcacattgaaagttcatcaagagctcggctgcaggtgctgatcagcgatagcattcagcgtgccggtttcatgtctgctgtccttgcttggcatattgcgacggacatatccttcttccatgaagatgagctaggctgcagctctccatccagaggtccaagcagagaactatctaactatgtcatgtacctttctgcaaagcatggcatcctatctggcaatgatgggcacatgcggcttagaaatgctcaggaattcatcgttgaatgtctgcaagaccgccaggaagctctagatcaagatgctgttgtcagaagtgtagctgcaaagatagataatctaactgaggatttcgagcacccaagaatactgacggcagttgagcctgtgttaatccaaagtggccaacttgccaaggagctgcttaagatgaaagaagcaaatgatcgatgggatatcatcatgaatgtttggatggagatgctttgctacatggcatttcactgcggacctggtttccacattaagcaggtaagcaagggtggagagttcatcagccatgcatgtgaaggttgtgatatattataa
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| CDS seq | atggtgctcatattcatctcaggtaccatcaagtatgcttgcagaacatcggcactcatgtttactgctgaacaaacaacacctgggagtaatcttggcatgcaggcaaagggttggtcagctaattggaaacattattcgactaataattggatgatgaatgaggtgcacacttacaacgaacttttgtgggaagccaacgcaggctggaccttatacatggccttcctgatggatatgacaccgctgatatctaggcctgaaacctattcactgcaagggctcctgtcgaaggaacaccgagtctatgtctcttacaagctagctgagctccagctctcgattgtgtatgactacttctacaccaagcttggagtgtattttgagcccgaggaacgactaaatggtcgcttcgcccagcttgctacattgggctccccctttgcagctacgatagagccgatattgtttggagctttcattctagagatactctctgtttttattgttgtctcatcattctgggcatacttcatggcaactgtatctgatttcctttgtactagatgtcatgatgtgatcttcagcatcgtcaagcttgtccatccagagagcaaaccacaatggtcccaaaagttggcacagtacaacctcatcatcggatgtataaagcagaagagagcagcagctggcagctgtttactgaaatgcatgaagcgtgtgatcggcatccagcccagcactatgactcatgtcgacatctctcatgagctgaagaagctcgtccttgataagctactacaggttggaagcagattgcatccagatgatgtgtgggacatcagcaaattcaccggccaatgggcaaagttggagctcatgaggagcaaactgcacattgaaagttcatcaagagctcggctgcaggtgctgatcagcgatagcattcagcgtgccggtttcatgtctgctgtccttgcttggcatattgcgacggacatatccttcttccatgaagatgagctaggctgcagctctccatccagaggtccaagcagagaactatctaactatgtcatgtacctttctgcaaagcatggcatcctatctggcaatgatgggcacatgcggcttagaaatgctcaggaattcatcgttgaatgtctgcaagaccgccaggaagctctagatcaagatgctgttgtcagaagtgtagctgcaaagatagataatctaactgaggatttcgagcacccaagaatactgacggcagttgagcctgtgttaatccaaagtggccaacttgccaaggagctgcttaagatgaaagaagcaaatgatcgatgggatatcatcatgaatgtttggatggagatgctttgctacatggcatttcactgcggacctggtttccacattaagcaggtaagcaagggtggagagttcatcagccatgcatgtgaaggttgtgatatattataa
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| Protein seq | MVLIFISGTIKYACRTSALMFTAEQTTPGSNLGMQAKGWSANWKHYSTNNWMMNEVHTYNELLWEANAGWTLYMAFLMDMTPLISRPETYSLQGLLSKEHRVYVSYKLAELQLSIVYDYFYTKLGVYFEPEERLNGRFAQLATLGSPFAATIEPILFGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQKLAQYNLIIGCIKQKRAAAGSCLLKCMKRVIGIQPSTMTHVDISHELKKLVLDKLLQVGSRLHPDDVWDISKFTGQWAKLELMRSKLHIESSSRARLQVLISDSIQRAGFMSAVLAWHIATDISFFHEDELGCSSPSRGPSRELSNYVMYLSAKHGILSGNDGHMRLRNAQEFIVECLQDRQEALDQDAVVRSVAAKIDNLTEDFEHPRILTAVEPVLIQSGQLAKELLKMKEANDRWDIIMNVWMEMLCYMAFHCGPGFHIKQVSKGGEFISHACEGCDIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0002650 | OsLiXu_08g0002650.01 | Chr08 | 2171309 | 2172810 | + | NAM | ||
| CDS seq | atggtgctcatattcatctcaggtaccatcaagtatgcttgcagaacatcggcactcatgtttactgctgaacaaacaacacctgggagtaatcttggcatgcaggcaaagggttggtcagctaattggaaacattattcgactaataattggatgatgaatgaggtgcacacttacaacgaacttttgtgggaagccaacgcaggctggaccttatacatggccttcctgatggatatgacaccgctgatatctaggcctgaaacctattcactgcaagggctcctgtcgaaggaacaccgagtctatgtctcttacaagctagctgagctccagctctcgattgtgtatgactacttctacaccaagcttggagtgtattttgagcccgaggaacgactaaatggtcgcttcgcccagcttgctacattgggctccccctttgcagctacgatagagccgatattgtttggagctttcattctagagatactctctgtttttattgttgtctcatcattctgggcatacttcatggcaactgtatctgatttcctttgtactagatgtcatgatgtgatcttcagcatcgtcaagcttgtccatccagagagcaaaccacaatggtcccaaaagttggcacagtacaacctcatcatcggatgtataaagcagaagagagcagcagctggcagctgtttactgaaatgcatgaagcgtgtgatcggcatccagcccagcactatgactcatgtcgacatctctcatgagctgaagaagctcgtccttgataagctactacaggttggaagcagattgcatccagatgatgtgtgggacatcagcaaattcaccggccaatgggcaaagttggagctcatgaggagcaaactgcacattgaaagttcatcaagagctcggctgcaggtgctgatcagcgatagcattcagcgtgccggtttcatgtctgctgtccttgcttggcatattgcgacggacatatccttcttccatgaagatgagctaggctgcagctctccatccagaggtccaagcagagaactatctaactatgtcatgtacctttctgcaaagcatggcatcctatctggcaatgatgggcacatgcggcttagaaatgctcaggaattcatcgttgaatgtctgcaagaccgccaggaagctctagatcaagatgctgttgtcagaagtgtagctgcaaagatagataatctaactgaggatttcgagcacccaagaatactgacggcagttgagcctgtgttaatccaaagtggccaacttgccaaggagctgcttaagatgaaagaagcaaatgatcgatgggatatcatcatgaatgtttggatggagatgctttgctacatggcatttcactgcggacctggtttccacattaagcaggtaagcaagggtggagagttcatcagccatgcatgtgaaggttgtgatatattataa
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| Protein seq | MVLIFISGTIKYACRTSALMFTAEQTTPGSNLGMQAKGWSANWKHYSTNNWMMNEVHTYNELLWEANAGWTLYMAFLMDMTPLISRPETYSLQGLLSKEHRVYVSYKLAELQLSIVYDYFYTKLGVYFEPEERLNGRFAQLATLGSPFAATIEPILFGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQKLAQYNLIIGCIKQKRAAAGSCLLKCMKRVIGIQPSTMTHVDISHELKKLVLDKLLQVGSRLHPDDVWDISKFTGQWAKLELMRSKLHIESSSRARLQVLISDSIQRAGFMSAVLAWHIATDISFFHEDELGCSSPSRGPSRELSNYVMYLSAKHGILSGNDGHMRLRNAQEFIVECLQDRQEALDQDAVVRSVAAKIDNLTEDFEHPRILTAVEPVLIQSGQLAKELLKMKEANDRWDIIMNVWMEMLCYMAFHCGPGFHIKQVSKGGEFISHACEGCDIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0149850 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0149850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002750 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002790 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002600 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0032600 | RBH | 0.02511 | 0.009982 | 0.017606 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002470 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0037100 | RBH | 0.045121 | 0.0064835 | 0.0146415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002620 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002460 | RBH | 0.0 | 0.0 | 0.0 |
