Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_07g0028150		OGI:07002320 \| 16/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr07:28907755-28907937		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		EULD2, OsEULD2, EULD2
DNA seq		atgttcagccaccatgggcacggccacggccaataccagcctccggcgactgGtccccagcacgagccgacgttcaagatcttctgccgcGccgacgaggggtactgccttaccgtccgccacgacgccgtcgtcctcgcgccaaccaacccccgcgacgactgccaggcaccaccaccataa
CDS seq		atgttcagccaccatgggcacggccacggccaataccagcctccggcgactgGtccccagcacgagccgacgttcaagatcttctgccgcGccgacgaggggtactgccttaccgtccgccacgacgccgtcgtcctcgcgccaaccaacccccgcgacgactgccaggcaccaccaccataa
Protein seq		MFSHHGHGHGQYQPPATGPQHEPTFKIFCRADEGYCLTVRHDAVVLAPTNPRDDCQAPPP
Function		Ricin B-like lectin R40G2 [UniProtKB/Swiss-Prot:Q6Z4N6]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_07g0028150	OsLiXu_07g0028150.01	Chr07	28907755	28907937	+	NAM
CDS seq	atgttcagccaccatgggcacggccacggccaataccagcctccggcgactgGtccccagcacgagccgacgttcaagatcttctgccgcGccgacgaggggtactgccttaccgtccgccacgacgccgtcgtcctcgcgccaaccaacccccgcgacgactgccaggcaccaccaccataa
Protein seq	MFSHHGHGHGQYQPPATGPQHEPTFKIFCRADEGYCLTVRHDAVVLAPTNPRDDCQAPPP

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	1.019125	0.000000	0.273256

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0683900	SBH	54.928452	59.122253	58.250732
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g48460	SBH	0.404712	1.553467	2.066215
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0683600	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0028010	SBH	0.0	0.0	0.788490
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0028050	SBH	0.777440	0.0	1.757496
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0027830	RBH	0.0	3.993719	3.282575
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0027640	SBH	0.088809	0.036607	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0027930	RBH	4.450695	4.311213	2.215558
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0472000	SBH	40.423626	52.1333755	18.852046
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0028370	SBH	0.297460	0.098820	0.536594
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0486000	SBH	26.4688465	19.277301	42.1646785
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0027660	SBH	0.426089	0.215069	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0028110	RBH	2.645105	9.503336	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0027830	SBH	7.324739	7.845410	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0016010	RBH	1.687189	15.750643	5.376459
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0027720	RBH	0.000000	0.885379	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G027790	RBH	0.645393	0.000000	1.236650
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0027540	RBH	1.633663	7.411971	11.208426

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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