Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0025550 | OGI:07074970 | 4/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:26926215-26929745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgaagcgcaaggcaccgtccggcccctcctcctcgccgtctcccgccgccgctggcgccgacgcgtccccgcccgtcgaccccgtcagttcacctctccctcgaatctcacgctagttttgatttctcttccttttgttgaggtttcgtattctagctcgcagggtggatccgccggcgggaggaatcgcaagggcgcagcggcggcggccaagcggaagcctaggaagccgcaggtttgcgtcctcccaaatcccaatcgcagcaaatccttgcatcctgctctcttttttgattcgtttgaggctgtaattttgccactgaatgtgtggttactgttctgcccccaaatacaacattggcctgatgcaataattctgtcacttttgcgtaggttcacgagaaaaattacgcgcatgtgtactatggatgtagaaatgttttatatgatgggaatgatttctactatggacatagatatacagaagaatttcgtaaggtggaggcacatgatttgtatggatgtccacacttgattgccgagctaccaccacaaccacggttaatgtcattgctggatttacagctctggattatcaagttgtttagactccatccagaaacacaagacctctcaattaagggcttcttcgaagaagaagacagttggcaatacttaggttcagcgggctggaagacctatgattttctatctgataaaagttggcagtcctttgtcaagaaagtaaagggtagaaaggggatggaatttttcaagttgtatgtggactcctctgaaatcaagcactacgacagtttgctaaaagcaacaaatgatgattattgtcagtcggcaactgtcttgttgcccgagcaagatgatctgacatggtattttccttgggatcacatttcccgacgcctcacggaagacctggcaatgacaactacacagattgtagctcatcttgctcacaactatgacaggcaccttagctatgctggggcatggagagcaaagcagaaggctttggagatacgatttggtacattttatgcttcacacaactatgtcccgaggttactcaaggaaagattttacataaataaccctttcagttttgtggacatcaaggatacagaggttgcaggctgtaaagatttccgagtcctccaccgtatattctgggcatttgcacagtgcacgcaggcctttctgcactgtcgtcctgtgatttgtgttaagggaatgccgctatgtgggaaatatgaaggggttctgttaactgctctagcatttgatgctaatggttaccccattccagtagcatttgctgtcatcgagggtgagagcaaagaaagctggctatggtttcttaggaatgtgaaacatgctgttgtgaaggagcgatctcatatctgcatcatacatgattgcaaaagggcattgttcaatgctatagaagatctaaggaataatccacaagaagcacatccatggaaggatgtacaaagccgctggtgcatccaacaccttgctgaaaacctgttcgcccattttgctgacaaaaagctgatgatgctgttcaagaagctttgtcagcagaaccgacaaaacaagtttgttaagatctggaaggaactagatgagttgacgctcaaatttacggtagataaagaaggtggtgctggtagggaaatgatgcaggagttggttgagccttatgagaataatcgactcccggaggaggatgaggaggagagtaatcggccaagtggcaacaaaagccaggtagccatgttttctgactggatcagtcaaaaaccaatggagaaatggtcattgttgcatgatacaaatggagctagatatggcattatggagactgatataaacaaaagttaccatgtattgaagctgaaggggatagaatgccttccactcactggactagtggaggtggcatttgaacgtgtgacagagtatttcaataacagaagtgctgctgcaaacaaagcaacgggcaacccttccatgggcttccctgaatgtgtccaggatgagatgaatgcaaaagtgcaaaaagcacagacgtatcacgtgacccgcatgaacactgcggatacaaatgttttctccaacgaagcgcatcaaaggtttaaggttcagtcaagacagaagggtgtgattattcatctgatatcgaaacgtatccataagaatcacaaaaggaacatagcgtgtcaaagcgaaatcagaagaatcgctcgatgttcatgcaacaaagcaaggctgcttcacaagccctgctctcatgtcattgccgtctgctgtcaggttggagtcagcattgcctcatacatgtcccccttctacagcctgtcctatctagtcaaaacttggagtggaaaatcagatgcatccaaccttgttgaccggaattttgctcggaatgtcctaaactacaaatttctgtgcccaggggagacgcaaacatggatccctgataaacgtttggagcgtggccttcctgcctttttaacatcagacaggatacatgatgaggagagcatggatgagggagatcaaaactgcacaactcaggttataacaactgaaaacagtcagggaaccaacaagttctcaggagaaactagtgatgcttgacttgtgttatcatccgacaacttatctatgcatgttagttgtatcataaatatgtactatccattgaacttaacttatcctacgtgacctttaatttcctttttaaaaagaaatcatgtgtgtgctatgcctattgtttgttctctgcaatctctaccattttctgactgtcaccgatattcttcttggctttgcagttaaactgttaaaggcagtattttggtgcatacatatgtacgggataatttactatttgccactctgttaaagtctgtgatgctttagcttatgcttcgaaaaatctttgatactgccattgatttttctgtgccaacccgcaccgaagcgcagggtgcacacctggaagtataatgttagcaatagtgttaattcaagcaatttctaatcaatctagcatgtaatactatactctctccagccataaaagaagatcgattttgactattcaaagtccacaagacacaaatttgaacgctagattctccctcataagtctgaaaataggttaggtaagtgcaatgccgttattcaagcatttgctgtaataaacttggatacataatttcatatgcgaaatatacattctaaataataagtataataaagttaacattatagatctagtgagatcaaagatgtgccgttgatttttatctctttgagcgtgtgttagggccatattcatgggtgtgtaaatgtgatgttgcatggcccactctgttacagaaacagaggtatcactcgtccagaaagcaaagctgaccaagtcacctttactgagattaacgcaaaatcagtctttatttcttgagtatcatagccatggattttctccttga
More
|
||||||||||
| CDS seq | atggcgaagcgcaaggcaccgtccggcccctcctcctcgccgtctcccgccgccgctggcgccgacgcgtccccgcccgtcgaccccggtggatccgccggcgggaggaatcgcaagggcgcagcggcggcggccaagcggaagcctaggaagccgcaggttcacgagaaaaattacgcgcatgtgtactatggatgtagaaatgttttatatgatgggaatgatttctactatggacatagatatacagaagaatttcgtaaggtggaggcacatgatttgtatggatgtccacacttgattgccgagctaccaccacaaccacggttaatgtcattgctggatttacagctctggattatcaagttgtttagactccatccagaaacacaagacctctcaattaagggcttcttcgaagaagaagacagttggcaatacttaggttcagcgggctggaagacctatgattttctatctgataaaagttggcagtcctttgtcaagaaagtaaagggtagaaaggggatggaatttttcaagttgtatgtggactcctctgaaatcaagcactacgacagtttgctaaaagcaacaaatgatgattattgtcagtcggcaactgtcttgttgcccgagcaagatgatctgacatgccatggattttctccttga
More
|
||||||||||
| Protein seq | MAKRKAPSGPSSSPSPAAAGADASPPVDPGGSAGGRNRKGAAAAAKRKPRKPQVHEKNYAHVYYGCRNVLYDGNDFYYGHRYTEEFRKVEAHDLYGCPHLIAELPPQPRLMSLLDLQLWIIKLFRLHPETQDLSIKGFFEEEDSWQYLGSAGWKTYDFLSDKSWQSFVKKVKGRKGMEFFKLYVDSSEIKHYDSLLKATNDDYCQSATVLLPEQDDLTCHGFSP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025550 | OsLiXu_07g0025550.01 | Chr07 | 26926215 | 26929745 | + | NAM | ||
| CDS seq | atggcgaagcgcaaggcaccgtccggcccctcctcctcgccgtctcccgccgccgctggcgccgacgcgtccccgcccgtcgaccccggtggatccgccggcgggaggaatcgcaagggcgcagcggcggcggccaagcggaagcctaggaagccgcaggttcacgagaaaaattacgcgcatgtgtactatggatgtagaaatgttttatatgatgggaatgatttctactatggacatagatatacagaagaatttcgtaaggtggaggcacatgatttgtatggatgtccacacttgattgccgagctaccaccacaaccacggttaatgtcattgctggatttacagctctggattatcaagttgtttagactccatccagaaacacaagacctctcaattaagggcttcttcgaagaagaagacagttggcaatacttaggttcagcgggctggaagacctatgattttctatctgataaaagttggcagtcctttgtcaagaaagtaaagggtagaaaggggatggaatttttcaagttgtatgtggactcctctgaaatcaagcactacgacagtttgctaaaagcaacaaatgatgattattgtcagtcggcaactgtcttgttgcccgagcaagatgatctgacatgccatggattttctccttga
More
|
|||||||
| Protein seq | MAKRKAPSGPSSSPSPAAAGADASPPVDPGGSAGGRNRKGAAAAAKRKPRKPQVHEKNYAHVYYGCRNVLYDGNDFYYGHRYTEEFRKVEAHDLYGCPHLIAELPPQPRLMSLLDLQLWIIKLFRLHPETQDLSIKGFFEEEDSWQYLGSAGWKTYDFLSDKSWQSFVKKVKGRKGMEFFKLYVDSSEIKHYDSLLKATNDDYCQSATVLLPEQDDLTCHGFSP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0646500 | RBH | 0.291563 | 0.104896 | 0.250827 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45180 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0646500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025380 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025450 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025280 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025300 | SBH | 0.0 | 0.036348 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025460 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0444100 | RBH | 0.0485925 | 1.48476 | 0.113247 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025960 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0456100 | RBH | 0.6964045 | 0.0250255 | 4.184626 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025360 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025290 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025210 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025200 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025210 | SBH | 0.0 | 0.0 | 0.0 |
