Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0025280 | OGI:07074960 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:26522472-26526799 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgggaagcgagagcgtccccctccccgactcccgaggcgcacgacgacacacgacacccacgacacgcacagtgcgagagctctcgtcgagaccagcgccgccgccgccgccgatcatgtcggagcgcgagggcccgccgtcctccggccccgcggcggccgtggcgccgcctcccctcgccgccgaacccgtgcgttcgatctcctcgccgcgctatctctctctctccgcttgcttcctcttcttctcctgttgttgaagtcgtgtgcgttctgtgcccgcagggtgcccgcggcggcggcgacggcggcggcggagggaggaagcggaagggcgcggcggccggagccggagccgcggccgcgcggaagcctcgaaaggtagccactcttgttcgattcgtttgagtatggagcaaagtgccacttcaacaacagtagatttccccaacaaaatctctgcatctactgttatttccccaaacacaacatcacaatgacgcatccgtactaccatggtttcatgtaggattacgggacaaatcaggcttatgtgttctacggacattcgcgagatttccagtacgtgggcgtagaagatttgcctaaatgtgcacacgtgattgcggagcttccaccgcagtcgcagtcaatgtcactgatggatgtgcagatctggatcatcaaattgtttcagctccatcctgaaactcaagatctctcaatcaagggtttctactcggattattgcccctctgtcctaattccagagtggtattttgggtactggataacctatgattgtctacgtgatgaatcatgggcttcctttgccaagaaagttagggggagaagaaatgggatggaaatgttcgtcttatatgtggactcctctgaaatcaagcactccagcagtttgatcaaagccatacctgatgattattctcagttggaaacggctgtgctgcctgacggaaaatccctgtcgtcatttttccctttgaattgcacttccaaacgcctcaccgaagacctgacgatgacaaccacggagatcgccgcatatcttgctcaatactacggcgatcagtacagtcgtgctggggcatggagggcaaaaatgaaggctttggagctgcgctatggtaccttctatgattcacacaactatgcgccgaggttacttaaggacataaaacataagcacccttacagttttgtggacatcaaggatacagaggttgcagactgtaaagatttcagagttctccaccggatattttgggcattcgaccagtgcagaaggtcctttatgcattgtcgtcctgtgatctgcattaagggcacaccactctgtggtaaatatcaaggagtgctgatgactgctctagcatttgatgctaatgattactgcattccagtcgcatttgctgtggtcgaaggtgagagcaaggaaagctggttgtggtttctgaggaatgtgaatcattctgttgtgaatgggcgttctaatgtatgcctcatacatgattacaaaagagagttgcttgatgctgtagaggacctgcaggatagtcctgaagaagcatatccatggagaggcatacagagccggtggtgcgtcgaacaccttgctgaaagcttctttgcacattttggtgacaggaagctggtgatgttattcaagaaactctgtcagcaaagccgaccatgtaagtttggcaaaatttggaaggagctagatgagttgacactgaaatatacgcaggagaaagaaagtggtgctagtggggaaattcaacaggagtcagttgagcatggcgaaacagagtttgtggcacaaagaccacacatccatcttgattcagtgggagaggaggtggaaaggaattgctctggtggcacagagagcaaaataacaaggttctccgagtggatcggtccaaaaccaatggagaaatggtcattgttgtacgataaaaacgacgcaagatatggcatcatgggcaccagtatagctgatttatacaaagataaccatgtaatgaaggggataaggtgccttccgctctctggattactggacctgacataccgtcgcatggcagaatgttacgataccagaagtgctgctgcaaagaaatcaactggcaaccctttaattaacttccctgaatgcatccaggatgagatgaaggccaaattgcagaaagccgagacacatcacgtaacttgtataaacagtgggaataaaaacgctttctttgaggaaggacacggaatatttaaggtccaatcaaagaacaagtatgtgattgttgagctgacacagagagagacacaaacgcacaaacatcctaaagttcgaaccgtaatcagcggaaataccatccacaatactttagttcgagagccagtgataagaaaagctcactgttcttgcaacaagctgaagctgcttcgcaagccctgctcccatgtcatcgccgtctgctgtcaggttggagttagccctgatacatacatgtccccttactacactctggcttatcttgctgacacttggaggggcaaattcgatgcatcggaggccttaggagaacactacacattaggagacttttgcagagatccttgctattcaacacttatgttaggaaatccgccaacatggatccctgataaaaggatggagtgcggtcttcctgccttcctaacatcggacgggacccaaaatggcgttgatgaggaagagcaacaatgcagcattgagagtgtatcatcagctgctgacaatcaaggcactgaaaatcgttcatcaagagaaactgaccaggtctgaattctgttgtgagtgtatcaccttatgttgtatcctgaatctgtaatgtccattgtacttgacctatcctaagtaaccctgaattttgccatgatcatttgcaatgctattgttctctcttgatagtgttgactcttgagaatagtacgtactgccttgttcatagcaaaatgcacctaacactgataatgctgatatatcctgttatctggacgccagactgtttattggatcaggtatttcaagtgtgctgttatgcttacatctttccccttttttcctttaaagttggaactatattgattatcgtgaataatcagccttttaacataatgactattacgtgacaacttctacagctatgttagatgctaacaataagttctcttatcttaaactaacagttggcatagtgtgctgattttagtatggtcgtgttactcgtgtaaccatgtactgttagttctgtaaatatcacaggctgaaaacacgaaaggccattaacacaagaatgccaaaacgagaaaaagttcactctagatccctcatcttgtcgtcgagtttcaaaaacacccctgaaccataaaaccagattcaacgtatcccctcacttaaaaaatatcagtgcacacgagatacacgccttggggacctcctcgtgtgcactagtttccgagtgtggacgtaaagtgaacttttttcccgaaacgatgatcacaagggcccatgggcctttgtactttgcttccacggcccaggacatcacggtctactaccatcatcaatggcgggaaaagcatgggagaaatggagggaaaatgagctcccattccccacccagaggccgccgccgccactgcggagcggagcttttttttcgcgaacacgtaaaaagattgcacgtcaatatatcagaagaaaagagttatagttacacaacacaatcagccagaccggtttatgccaggggaaaggaaaaaaacaaaataaaaatgttgaagcttagaaaaaactacggcggctaaacacaaactccaactaatgggaagggccaagccactctacactagtatttccgtgtgtggacgtaaagtgacgatgtcctcgccgtctcccgccgccgctggcgcctacgcgtccctgtccttcccaaaggagctctgctgccaagcaccagaatctctacaagagcacaggctcatatatgcagggaattttccttcctttttgtttttttttttcagtttcttcagaaaggttaacaggttttgtagcggatctatcgttgctttctgacttactgtttctctgaacagtgaacactgaagctttggttcctctgctggatttcatgtagatgaaggtgtgaaggcgagatattggatcaaccccgataagaaggtactggagatcctgcatgctgaatccaggtccaagcaggaaatggctctgctgctttgccaaaacctcatcactatttaa
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| CDS seq | atggcgggaagcgagagcgtccccctccccgactcccgaggcgcacgacgacacacgacacccacgacacgcacagtgcgagagctctcgtcgagaccagcgccgccgccgccgccgatcatgtcggagcgcgagggcccgccgtcctccggccccgcggcggccgtggcgccgcctcccctcgccgccgaacccggtgcccgcggcggcggcgacggcggcggcggagggaggaagcggaagggcgcggcggccggagccggagccgcggccgcgcggaagcctcgaaaggattacgggacaaatcaggcttatgtgttctacggacattcgcgagatttccagtacgtgggcgtagaagatttgcctaaatgtgcacacgtgattgcggagcttccaccgcagtcgcagtcaatgtcactgatggatgtgcagatctggatcatcaaattgtttcagctccatcctgaaactcaagatctctcaatcaagggtttctactcggattattgcccctctgtcctaattccagagtggtattttgggtactggataacctatgattgtctacgtgatgaatcatgggcttcctttgccaagaaagttagggggagaagaaatgggatggaaatgttcgtcttatatgtggactcctctgaaatcaagcactccagcagtttgatcaaagccatacctgatgattattctcagttggaaacggctgtgctgcctgacggaaaatccctgtcgtcatttttccctttgaattgcacttccaaacgcctcaccgaagacctgacgatgacaaccacggagatcgccgcatatcttgctcaatactacggcgatcagtacagtcgtgctggggcatggagggcaaaaatgaaggctttggagctgcgctatgatgaaggtgtgaaggcgagatattggatcaaccccgataagaaggtactggagatcctgcatgctgaatccaggtccaagcaggaaatggctctgctgctttgccaaaacctcatcactatttaa
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| Protein seq | MAGSESVPLPDSRGARRHTTPTTRTVRELSSRPAPPPPPIMSEREGPPSSGPAAAVAPPPLAAEPGARGGGDGGGGGRKRKGAAAGAGAAAARKPRKDYGTNQAYVFYGHSRDFQYVGVEDLPKCAHVIAELPPQSQSMSLMDVQIWIIKLFQLHPETQDLSIKGFYSDYCPSVLIPEWYFGYWITYDCLRDESWASFAKKVRGRRNGMEMFVLYVDSSEIKHSSSLIKAIPDDYSQLETAVLPDGKSLSSFFPLNCTSKRLTEDLTMTTTEIAAYLAQYYGDQYSRAGAWRAKMKALELRYDEGVKARYWINPDKKVLEILHAESRSKQEMALLLCQNLITI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0025280 | OsCMeo_07g0025280.01 | Chr07 | 26522472 | 26526799 | + | NAM | ||
| CDS seq | atggcgggaagcgagagcgtccccctccccgactcccgaggcgcacgacgacacacgacacccacgacacgcacagtgcgagagctctcgtcgagaccagcgccgccgccgccgccgatcatgtcggagcgcgagggcccgccgtcctccggccccgcggcggccgtggcgccgcctcccctcgccgccgaacccggtgcccgcggcggcggcgacggcggcggcggagggaggaagcggaagggcgcggcggccggagccggagccgcggccgcgcggaagcctcgaaaggattacgggacaaatcaggcttatgtgttctacggacattcgcgagatttccagtacgtgggcgtagaagatttgcctaaatgtgcacacgtgattgcggagcttccaccgcagtcgcagtcaatgtcactgatggatgtgcagatctggatcatcaaattgtttcagctccatcctgaaactcaagatctctcaatcaagggtttctactcggattattgcccctctgtcctaattccagagtggtattttgggtactggataacctatgattgtctacgtgatgaatcatgggcttcctttgccaagaaagttagggggagaagaaatgggatggaaatgttcgtcttatatgtggactcctctgaaatcaagcactccagcagtttgatcaaagccatacctgatgattattctcagttggaaacggctgtgctgcctgacggaaaatccctgtcgtcatttttccctttgaattgcacttccaaacgcctcaccgaagacctgacgatgacaaccacggagatcgccgcatatcttgctcaatactacggcgatcagtacagtcgtgctggggcatggagggcaaaaatgaaggctttggagctgcgctatgatgaaggtgtgaaggcgagatattggatcaaccccgataagaaggtactggagatcctgcatgctgaatccaggtccaagcaggaaatggctctgctgctttgccaaaacctcatcactatttaa
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| Protein seq | MAGSESVPLPDSRGARRHTTPTTRTVRELSSRPAPPPPPIMSEREGPPSSGPAAAVAPPPLAAEPGARGGGDGGGGGRKRKGAAAGAGAAAARKPRKDYGTNQAYVFYGHSRDFQYVGVEDLPKCAHVIAELPPQSQSMSLMDVQIWIIKLFQLHPETQDLSIKGFYSDYCPSVLIPEWYFGYWITYDCLRDESWASFAKKVRGRRNGMEMFVLYVDSSEIKHSSSLIKAIPDDYSQLETAVLPDGKSLSSFFPLNCTSKRLTEDLTMTTTEIAAYLAQYYGDQYSRAGAWRAKMKALELRYDEGVKARYWINPDKKVLEILHAESRSKQEMALLLCQNLITI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0646200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45180 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0646200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025300 | RBH | 0.0 | 0.036348 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025460 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0444000 | RBH | 0.2123145 | 0.1084825 | 1.924441 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0455800 | RBH | 0.154662 | 0.0067305 | 1.179263 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025200 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025210 | RBH | 0.0 | 0.0 | 0.0 |
