Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0025340 | OGI:07002470 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:26790074-26791882 | ||||||||
| Gene Symbol | Os_F0606 | ||||||||||
| DNA seq | atgaccaccatcagtcgagtaaaaggggacgagtctggtaaaccatccaggcggcttccatccctggagaagaagcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggctagagctggagatgagaaaagtaacaaagatgcggcgtcctcagaggtttcatacatcaaatacgatgtactggggcaaagtgcgaagcaggatggctgtgatgaggatgatcgaaggagtgaaacggaggaacatgttgaggaggacgaagttcttgatcctgaagaatatactgtgaacaacatacttccaaaaagtagacaccgtgatggctctatatacagggacatcatggatacaccgtggaaaagggagtttcatattgcagaccgtaatgagagtaagctatcttttctctatctttatttgctatagtattttttattagagataatttgtttccttgaacatagcgaatctctttccatatctataaatattttattgtgatcctagagatcattgtatatgtggtgctatgcagcactgccaaaattttacccgcctttacactcttttcagctatgagataattgtactggatgcccttaaacatggatgagagtaacactaccaccccaagcaactttacttttactggcccttcagcttagcaccatttgcacacatagcaatctgtgccacagcctgatgggagggactgacttccaaggcttgaagttaagcaaagttttacaaggtgtcccgaacttgcatactttgacaatagatttccaaggagaaaaggtaattgcataatcatttgttatgatctgcttttctattattggtacaactgttacgttgcggcatgttactcagaatgaggatctagcactaaaatgctgtgatagtttcagctggctcagttcaaccacttaggtgtatttaccttcaatttaaaaatgaaaaaacctgtgaggtggtcaagtgtgcaaccacaccctcctaaattttggtttaacccctcttttgcttgtaattgcccgcaaggattttattatttaggagtaatcttgtttgtgcaatggattcatatatatttggcaatcactcacgtgcttcatttctgccttttgttttttcagttatggatgcaacctgaacaaaaacagctctgccctgcattcaacaatctaaagaagttatctattctttgcattcatgttgaatttgacctgttatggactataaacctccttgaagctgcaccatccgttgagctcctttgtattgatgtaagtttcctttttttttaatagagcgcaacaatagcgtatgacagtaattgcaactggactatcattatgtgcacaaattaacataaccaagtgctcatactaaatgtaggcctgggaacatgtatgcttggtaaacaaagaggatgaagatggaagaaagcttgttcatggagaaacaacacatccttcatgggagatatctgagttcactggcaccagaaattggcaattgaaagaactccagttcactggctttaggccactcaagcaacaattggtctttttaaaggccatcatggagcaagctcgcaacctgcagactgttattctgaaagaggaagagccgtgcgaggactgtgaggcgataggcacgcctctttcttgtataaatgattatgactttccaaagtcgaaggatgagcaagacaatgtagttgagcagctcagagagaggatttcttcggattcgcaaattattttccagtgtttgtaa
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| CDS seq | atgaccaccatcagtcgagtaaaaggggacgagtctggtaaaccatccaggcggcttccatccctggagaagaagcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggctagagctggagatgagaaaagtaacaaagatgcggcgtcctcagaggtttcatacatcaaatacgatgtactggggcaaagtgcgaagcaggatggctgtgatgaggatgatcgaaggagtgaaacggaggaacatgttgaggaggacgaagttcttgatcctgaagaatatactgtgaacaacatacttccaaaaagtagacaccgtgatggctctatatacagggacatcatggatacaccgtggaaaagggagtttcatattgcagaccgtaatgagaggactgacttccaaggcttgaagttaagcaaagttttacaaggtgtcccgaacttgcatactttgacaatagatttccaaggagaaaagttatggatgcaacctgaacaaaaacagctctgccctgcattcaacaatctaaagaagttatctattctttgcattcatgttgaatttgacctgttatggactataaacctccttgaagctgcaccatccgttgagctcctttgtattgatgcctgggaacatgtatgcttggtaaacaaagaggatgaagatggaagaaagcttgttcatggagaaacaacacatccttcatgggagatatctgagttcactggcaccagaaattggcaattgaaagaactccagttcactggctttaggccactcaagcaacaattggtctttttaaaggccatcatggagcaagctcgcaacctgcagactgttattctgaaagaggaagagccgtgcgaggactgtgaggcgataggcacgcctctttcttgtataaatgattatgactttccaaagtcgaaggatgagcaagacaatgtagttgagcagctcagagagaggatttcttcggattcgcaaattattttccagtgtttgtaa
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| Protein seq | MTTISRVKGDESGKPSRRLPSLEKKHTAITQGMKTIDTRGTILEARAGDEKSNKDAASSEVSYIKYDVLGQSAKQDGCDEDDRRSETEEHVEEDEVLDPEEYTVNNILPKSRHRDGSIYRDIMDTPWKREFHIADRNERTDFQGLKLSKVLQGVPNLHTLTIDFQGEKLWMQPEQKQLCPAFNNLKKLSILCIHVEFDLLWTINLLEAAPSVELLCIDAWEHVCLVNKEDEDGRKLVHGETTHPSWEISEFTGTRNWQLKELQFTGFRPLKQQLVFLKAIMEQARNLQTVILKEEEPCEDCEAIGTPLSCINDYDFPKSKDEQDNVVEQLRERISSDSQIIFQCL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025340 | OsLiXu_07g0025340.01 | Chr07 | 26790074 | 26791882 | + | NAM | ||
| CDS seq | atgaccaccatcagtcgagtaaaaggggacgagtctggtaaaccatccaggcggcttccatccctggagaagaagcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggctagagctggagatgagaaaagtaacaaagatgcggcgtcctcagaggtttcatacatcaaatacgatgtactggggcaaagtgcgaagcaggatggctgtgatgaggatgatcgaaggagtgaaacggaggaacatgttgaggaggacgaagttcttgatcctgaagaatatactgtgaacaacatacttccaaaaagtagacaccgtgatggctctatatacagggacatcatggatacaccgtggaaaagggagtttcatattgcagaccgtaatgagaggactgacttccaaggcttgaagttaagcaaagttttacaaggtgtcccgaacttgcatactttgacaatagatttccaaggagaaaagttatggatgcaacctgaacaaaaacagctctgccctgcattcaacaatctaaagaagttatctattctttgcattcatgttgaatttgacctgttatggactataaacctccttgaagctgcaccatccgttgagctcctttgtattgatgcctgggaacatgtatgcttggtaaacaaagaggatgaagatggaagaaagcttgttcatggagaaacaacacatccttcatgggagatatctgagttcactggcaccagaaattggcaattgaaagaactccagttcactggctttaggccactcaagcaacaattggtctttttaaaggccatcatggagcaagctcgcaacctgcagactgttattctgaaagaggaagagccgtgcgaggactgtgaggcgataggcacgcctctttcttgtataaatgattatgactttccaaagtcgaaggatgagcaagacaatgtagttgagcagctcagagagaggatttcttcggattcgcaaattattttccagtgtttgtaa
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| Protein seq | MTTISRVKGDESGKPSRRLPSLEKKHTAITQGMKTIDTRGTILEARAGDEKSNKDAASSEVSYIKYDVLGQSAKQDGCDEDDRRSETEEHVEEDEVLDPEEYTVNNILPKSRHRDGSIYRDIMDTPWKREFHIADRNERTDFQGLKLSKVLQGVPNLHTLTIDFQGEKLWMQPEQKQLCPAFNNLKKLSILCIHVEFDLLWTINLLEAAPSVELLCIDAWEHVCLVNKEDEDGRKLVHGETTHPSWEISEFTGTRNWQLKELQFTGFRPLKQQLVFLKAIMEQARNLQTVILKEEEPCEDCEAIGTPLSCINDYDFPKSKDEQDNVVEQLRERISSDSQIIFQCL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0644700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45010 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0644700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025240 | SBH | 0.000000 | 0.0 | 0.290041 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025290 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025150 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025150 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025320 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0442700 | SBH | 4.5853915 | 3.4709785 | 3.309221 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025810 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0454400 | SBH | 0 | 7.5595935 | 5.5632465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025140 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025310 | RBH | 0.0 | 0.194361 | 0.367973 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025050 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025060 | SBH | 0.198487 | 0.0 | 2.440305 |
