Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0020990 | OGI:07066060 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:23508530-23513598 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacatagctgggaattctgaagattcatccacattagactcttttgtcgcatgatcatctaaaacatcacagaatcaagtaagacttactaatataaaaactataacagtttaatgaaaaacaaggatgaatatggagtagggaaattccacatgaataccttctggagattctgttttcttctcagagaggttatgtgttagaggtgaatcaaaatctccaaattgatgtgtcagtatctcctgggaaagttcaatgaaattcggcattttttgtcctatcagaaatgacaaaagaaatggcttaataagtcaaaatatagaatcacatccataagtctagaactaaatcagaagtggcacggcacaaagccaaggaagggcatttacagatttactcaccagagtgaccctcaatggcattgtcacatgatgtcctgtgtgcaacattgtcaaaacggtcgtttctctgaggaagctgcctgtatcggtaaacatgttattatgtttgaacatgtaaatacagagagaataaacaattgcacaatgtataagcttaaaatattagttcaacaaaagcaaactaatttccaaccattaaatcagtaaataactgtctcgtggaacttaaatgtgcagcaaaaacaaactatttccatgtattaaacggctaccttgcagggacttgtttaagatgtacgtataaattataattactgaaaaattcaatctgcaacttaagtacagacagaaaagctagttattattttttcacaaagacggtacatgtggaacagaatggacaaattgaccatacacttaaaataattaaccaaatgagtaatatgtcagtatgatttatgaagcacgcatgagtgcatgataacaaaaaagcgtgaaactgatgtcccatagaccgataattatttctaaaatcaaattagtccccactaaccactgccatgaaaaagaagtccctggtcaagatcatatttcaactaacaaccacatttcaagaactctcaaattgacttccagaattaatcttcagctaataactagttttaaaatcctcaagaaagcacttatggaagatttcgtgcaagtccttagatgagagagatttgatcgtttgcaagctatatatatgaagatcagaaaagggagaggacactgtggcaagactgccatttggacctcagaacaaacaagaacacatcaaactctaatcctgcaattagcagaataccgtgacataacccctctgaaaaagaggtgcacccagctgcttgccaggacagagaaggattgatttgggaatggttaaaatgtacttactatagatttgagtctaacccttttatccaaacaggttcttaacagtatagtttgtaaatcacgaatcagatattgtttgaacaaaaacaacagcaggtttaaaatgctggttaattaaagacaatgtgagaagcaatcaacaaaagaaacagtgaagttagataaagtacctttgctcttgtttggtcctatccaggtaaggctttgactctaacttctactccactgatggaatgcgatgtgctctttgataagagaagccccaccgtgtcatcattttcgaatgtcacaaaaccgaaagtgtgcttctcattgtctggcttaaaggggatgtagacattgatcacaggtccgaacttcctagaagaaataccatcataatattattgaattgaacatagtggtataatttgaaacttcaaatcatattgcacctagtcttgtcctcaaaacaaagtaaacatagtactaagtttagaagaaaatacttgaagtagtcccgaatatttttccaagtcaatatgttcttagcgatggtaatataaatcgtaaactcggtactttgaccgaagaaatccctctgtgagccatgaagatgggattgcctctgattgtgaccaaagaaatccctctgtgagccacgaggatgagattgcctctgcttgtgcaactcagggacaccagacccgagaacttgtgcatttaggtaatcccttggcatgccatcgaaggcattggcacatgatgtcctgtgtgcaacattgtcaaaatggtcgttttcttgaggaagcttcctgtatcggtaagcatgttaggtttgaatgtgtaaataagagagcaaaaacgattgaacaagctaaaaatattagttcaataaaagcaaactaatttccaaccattaaatcagtaaataaatgtctcgtggaacttaaatgtacagtgaaaacaaactatttccgtgtgcccaaaaattaaacggataccttgcaggtacttgtttaagatgtacgtaattatataattactgaaaaattcaatctgcaacttaagtacagccagaaaagctagttattatttttttcacaaagacggtacatgtggaacaaaatggacgatttgactacacatttaaaataagtaaccaaatgaataaactgtcaatatgatttatgaagcacacctgcacatgcatgagtgcatgataacataaaagcatgaactctgtcctatagactgaatgaatattaaaatcaaattagtccccaccaaccattgccatgcaaaaggaggccccgataatagatcatacttttattaacaaccatatttcaggaactctcaaattgacctccagaaagaatcttcaactaataactaattttagaatcctaaagaatgcacttatggaagattttgtgcaagtccttggatgagagggattgatcttttgccggccaaataaatgaagatcagaaaagggagagtacattgtggcaagattgccatttggacctcagaacaaacagaacacatcaaactcaaagcctgcaattagcagcaggatactgtgacgtaagttacataaccccactgaaaaagaggcacaccaagctgcttgccaggacatagggatcgatttgggaattgttaacatgtactcctcctaacaggcgctcaacagtatagtttgtaaaccataactcagatatcgtttggacgaaaacaacagtaggtttacattgtaggttaattaaaaaaactgcgagaagcaatcaacaaaagaaacagcaaagttagataacagacctttgctcttgtttggtccattccaggtaacgcttgactctaacttttactccaaagatgaaatgaggtgtgctctttgataagagaaggctcaccgtatcagcattttcaaatgtcacaaaaccgaaagtgtacttctcattccctggcttacagctaaggtagacattgatcacaggcccgaacttcctggaagaaatacaatcgtaaaattattgaattgaatgtagtggtataatttgaaactttaaatcatattacacctagtattgtcctccaaactagtaaacataatacaaaggttagaagaaaatacttgaagtagtcccaaatattttccttagttaatctgccgccatcaaagttgatggtaatataaatcgtaaaatcgggaccttcaccaaagaaatccctctgtcggccacgaggatgagattgcctctgattgtgcatctcatggacaccagacccgagaacattaacttgtgcatttagataatcccttggcaagccatcacctggaatgttcaaagactgcaaatgcgcagaaaatgggatgtcaaaacctccactttgaccaacggggaggcatggaaacttaactccatgataacaactacctacctgaaactgaggctccaaatagagcgatggggattcataatcataccgcgttgaaggtgactgcagtaagggtaactgctggaggtgttgtattggggggaacctcatgtagtatgacttcgcctcattaatcaaggcttgtattgcctcatcccgggctgaaaatgcataccaactgatccaacttggctttgatatgttgccgtactgaacaatagcatttgcacatgatggctccaactgatccaacttggcttgtgccgcaaaaccagttgacattggagcatatgccccccgttcctgcaacacaagggacaaaatataaaaacccactgcaagccaatatttctgattggaaaaatcagcagttatttctaaaagattacaaggataacaattaaaccaaaatttggcagtagagaaaattagtgcaagcaaaaccggaaaccttgcatctatctctgtttgcacccacaaaagaggaaacatttgcaccaactcgtgtttttccacattgacccaaaattatgttttcctggttccaaatctgaagaacaaagtgcaaagttatctgttggatgcaaaacagaaactctatacccaccaacccagccaaaatatccatagtaagagaacgaacccaatgagcaagaactattctttccaataacccttctcagaatccaaccaaaactagccgaacgctactcctcgtgtaatccatagacctgcctccacaagaacacaccaaaagaagaaaagagaagttgtatatctacaaacaagaactattccagccaagaacataatctcggaattaaaccaataccactcagattgtactagatactccacgaacccctagaagagctcaccccgcaaagaatcacaagagtacaaagcatcattctggccaagaatcagtatccagaatgcaactaaaaccgccaagattgtacctgataatccacgaacccctagaacagctgaacccgcaaagaatcacaagagtaaaaggcaccgtcccggccaagaatcagtatccagagttcaactagaaccaccaagattgtaccagataatccacgaaccgctacatgaattcacccgcgtaaagaaaagacaagaagcgaaggatcgttctagccaagaacccacccgtccccggaattcaaccaaaaccgctcttgattgtaccagatgctccacaaaccacctcaagaacgcacaaggatcaagcaaacgacagaaaagagcaaatgcaatgccgcgctagctccccaatttactagtacatacat
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| CDS seq | atgtatgtactaatttggaaccaggaaaacataattttgggtcaatgtggaaaaacacgagttggtgcaaatgtttcctcttttgtgggtgcaaacagagatagatgcaaggaacggggggcatatgctccaatgtcaactggttttgcggcacaagccaagttggatcagttggagccatcatgtgcaaatgctattgttcagtacggcaacatatcaaagccaagttggatcagttggtatgcattttcagcccgggatgaggcaatacaagccttgattaatgaggcgaagtcatactacatgaggttccccccaatacaacacctccagcagttacccttactgcagtcaccttcaacgcggtatgattatgaatccccatcgctctatttggagcctcagtttcagtctttgaacattccaggtgatggcttgccaagggattatctaaatgcacaagttaatgttctcgggtctggtgtccatgagatgcacaatcagaggcaatctcatcctcgtggccgacagagggatttctttggtgaaggtcccgattttacgatttatattaccatcaactttgatggcggcagattaactaaggaaaatatttgggactacttcaagaagttcgggcctgtgatcaatgtctaccttagctgtaagccagggaatgagaagtacactttcggttttgtgacatttgaaaatgctgatacggtgagccttctcttatcaaagagcacacctcatttcatctttggagtaaaagttagagtcaagcgttacctggaatggaccaaacaagagcaaaggaagcttcctcaagaaaacgaccattttgacaatgttgcacacaggacatcatgtgccaatgccttcgatggcatgccaagggattacctaaatgcacaagttctcgggtctggtgtccctgagttgcacaagcagaggcaatctcatcctcgtggctcacagagggatttctttggtcacaatcagaggcaatcccatcttcatggctcacagagggatttcttcggtcaaagtaccgagtttacgatttatattaccatcgctaagaacatattgacttggaaaaatattcgggactacttcaagaagttcggacctgtgatcaatgtctacatcccctttaagccagacaatgagaagcacactttcggttttgtgacattcgaaaatgatgacacggtggggcttctcttatcaaagagcacatcgcattccatcagtggagtagaacttcctcagagaaacgaccgttttgacaatgttgcacacaggacatcatgtgacaatgccattgagggtcactctggacaaaaaatgccgaatttcattgaactttcccaggagatactgacacatcaatttggagattttgattcacctctaacacataacctctctgagaagaaaacagaatctccagaagatgatcatgcgacaaaagagtctaatgtggatgaatcttcagaattcccagctatgtga
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| Protein seq | MYVLIWNQENIILGQCGKTRVGANVSSFVGANRDRCKERGAYAPMSTGFAAQAKLDQLEPSCANAIVQYGNISKPSWISWYAFSARDEAIQALINEAKSYYMRFPPIQHLQQLPLLQSPSTRYDYESPSLYLEPQFQSLNIPGDGLPRDYLNAQVNVLGSGVHEMHNQRQSHPRGRQRDFFGEGPDFTIYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSKSTPHFIFGVKVRVKRYLEWTKQEQRKLPQENDHFDNVAHRTSCANAFDGMPRDYLNAQVLGSGVPELHKQRQSHPRGSQRDFFGHNQRQSHLHGSQRDFFGQSTEFTIYITIAKNILTWKNIRDYFKKFGPVINVYIPFKPDNEKHTFGFVTFENDDTVGLLLSKSTSHSISGVELPQRNDRFDNVAHRTSCDNAIEGHSGQKMPNFIELSQEILTHQFGDFDSPLTHNLSEKKTESPEDDHATKESNVDESSEFPAM |
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| Function | Putative zinc finger CCCH domain-containing protein 51 [UniProtKB/Swiss-Prot:Q84ZT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0020990 | OsLiXu_07g0020990.01 | Chr07 | 23508530 | 23513598 | - | NAM | ||
| CDS seq | atgtatgtactaatttggaaccaggaaaacataattttgggtcaatgtggaaaaacacgagttggtgcaaatgtttcctcttttgtgggtgcaaacagagatagatgcaaggaacggggggcatatgctccaatgtcaactggttttgcggcacaagccaagttggatcagttggagccatcatgtgcaaatgctattgttcagtacggcaacatatcaaagccaagttggatcagttggtatgcattttcagcccgggatgaggcaatacaagccttgattaatgaggcgaagtcatactacatgaggttccccccaatacaacacctccagcagttacccttactgcagtcaccttcaacgcggtatgattatgaatccccatcgctctatttggagcctcagtttcagtctttgaacattccaggtgatggcttgccaagggattatctaaatgcacaagttaatgttctcgggtctggtgtccatgagatgcacaatcagaggcaatctcatcctcgtggccgacagagggatttctttggtgaaggtcccgattttacgatttatattaccatcaactttgatggcggcagattaactaaggaaaatatttgggactacttcaagaagttcgggcctgtgatcaatgtctaccttagctgtaagccagggaatgagaagtacactttcggttttgtgacatttgaaaatgctgatacggtgagccttctcttatcaaagagcacacctcatttcatctttggagtaaaagttagagtcaagcgttacctggaatggaccaaacaagagcaaaggaagcttcctcaagaaaacgaccattttgacaatgttgcacacaggacatcatgtgccaatgccttcgatggcatgccaagggattacctaaatgcacaagttctcgggtctggtgtccctgagttgcacaagcagaggcaatctcatcctcgtggctcacagagggatttctttggtcacaatcagaggcaatcccatcttcatggctcacagagggatttcttcggtcaaagtaccgagtttacgatttatattaccatcgctaagaacatattgacttggaaaaatattcgggactacttcaagaagttcggacctgtgatcaatgtctacatcccctttaagccagacaatgagaagcacactttcggttttgtgacattcgaaaatgatgacacggtggggcttctcttatcaaagagcacatcgcattccatcagtggagtagaacttcctcagagaaacgaccgttttgacaatgttgcacacaggacatcatgtgacaatgccattgagggtcactctggacaaaaaatgccgaatttcattgaactttcccaggagatactgacacatcaatttggagattttgattcacctctaacacataacctctctgagaagaaaacagaatctccagaagatgatcatgcgacaaaagagtctaatgtggatgaatcttcagaattcccagctatgtga
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| Protein seq | MYVLIWNQENIILGQCGKTRVGANVSSFVGANRDRCKERGAYAPMSTGFAAQAKLDQLEPSCANAIVQYGNISKPSWISWYAFSARDEAIQALINEAKSYYMRFPPIQHLQQLPLLQSPSTRYDYESPSLYLEPQFQSLNIPGDGLPRDYLNAQVNVLGSGVHEMHNQRQSHPRGRQRDFFGEGPDFTIYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSKSTPHFIFGVKVRVKRYLEWTKQEQRKLPQENDHFDNVAHRTSCANAFDGMPRDYLNAQVLGSGVPELHKQRQSHPRGSQRDFFGHNQRQSHLHGSQRDFFGQSTEFTIYITIAKNILTWKNIRDYFKKFGPVINVYIPFKPDNEKHTFGFVTFENDDTVGLLLSKSTSHSISGVELPQRNDRFDNVAHRTSCDNAIEGHSGQKMPNFIELSQEILTHQFGDFDSPLTHNLSEKKTESPEDDHATKESNVDESSEFPAM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.283681 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0583500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0583500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021070 | RBH | 0.0 | 1.003549 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021090 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021010 | RBH | 0.0 | 0.785760 | 1.667254 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020840 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020950 | SBH | 0.000000 | 0.000000 | 1.309282 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0387300 | RBH | 0.0519155 | 0.1055555 | 0.85393 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021380 | SBH | 0.0 | 0.0 | 0.106967 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0399900 | RBH | 0.135419 | 0 | 5.922812 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0020690 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020850 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020740 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020690 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020600 | RBH | 0.0 | 0.584766 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020660 | RBH | 0.0 | 0.0 | 0.524500 |
