Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsCMeo_07g0021010 | OGI:07066060 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:23162319-23167246 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ttaatctgcaaatagaaacaggagtactcattactcacatagctgagaattctgaagattcatccacattagactcttttgtcgcatgatcatctaaaacatcacagaatcaagtaagggcctgtttggcacagctccaactcctaaatataactccagaagttgagtctggagtggagttgtggagctgcctaaacccagctccacaactctattacattttgtgagagagctccacccaactccactcctagttttggtggagctaaaactgtttggctgagctccagctccaggaggggtggagttggagctggagctgtgccaaacaggccctaagacttactaatataaaaactataacagtttaatgaaaaacaaggatgaatatggagtagggaaattccacatgaataccttctggagattctgttttcttctcagagaggttatgtgttagaggtgaatcaaaatctccaaattgatgtgtcagtgtctcctgggaaagttcaatgaaattcggcattttttgtcctatcagaaatgacaaaagaaatggcttaataagtcaaaatatagaatcacaaccataagtctagaactaaatcagaagtggcacagcacaaagccaaggaagggcatttacagatttactcaccagagtgaccctcaatggcattgtcacatgatgtcctgtgtgcaacattgtcaaaacggtcgtttctctgaggaagctgcctgtatcggtaaacatgttattatgtttgaacatgtaaatacagagagaataaacaattgcacaatgtataagcataaaatattagttcaacaaaagcaaactaatttccaaccattaaatcagtaaataactgtctcgtggaacttaaatgtgcagcaaaaacaaactatttccatgtattaaacggctaccttgcagggacttgtttaagatgtacgtataaattataattactgaaaaattcaatctgcaacttaagtacagacagaaaagctagttattattttttcacaaagacggtacatgtggaacagaatggacaaattgaccatacacttaaaataattaaccaaatgagtaatatgtcagtatgatttatgaagcacgcatgagtgcatgataacaaaaaagcgtgaaactgatgtcccatagaccaataattatttctaaaatcaaattagtccccactaaccactgccatgaaaaagaagtccctggtcaagatcatatttcaactaacaaccacatttcaagaactctcaaattgacttccagaattaatcttcagctaataactagttttaaaatcctcaagaaagcacttatggaagatttcgtgcaagtccttagatgagagagatttgatcttttgcaagctatatatatgaagatcagaaaagggagaggacactgtggcaagactgccatttggacctcagaacaaacaagaacacatcaaactctaatcctgtaattagcagaataccgtgacataaCccctctgaaaaagaggtgcacccagctgcttgccaggacagagaaggattgatttgggaatggttaaaatgtacttactatagatttgagtctaacccctttatccaaacaggttcttaacagtatagtttgtaaatcacgaatcagatattgtttgaacaaaaacaacagcaggtttaaaatgctggttaattaaagacaatctgagaagcaatcaacaaaagaaacagtgaagttagataaagtacctttgctcttgtttggtcctatccaggtaaggctttgactctaacttctactccactgatggaatgcgatgtgctctttgataagagaagccccactgtgtcatcattttcgaatgtcacaaaaccgaaagtgtgcttctcattgtctggcttaaaggggatgtagacattgatcacaggtccgaacttcctagaagaaataccatcataatattattgaattgaacatagtggtataatttgaaacttcaaatcatattgcacctagtcttgtcctcaaaacaaagtaaacatagtactaagtttagaagaaaatacttgaagtagtcccgaatatttttccaagtcaatatgttcttagcgatggtaatataaatcgtaaactcggtactttgaccgaagaaatccctctgtgagccatgaggatgggattgcctctgattgtgaccaaagaaatccctctgtgagccacgaggatgagatagcctctgattgtgcaactcagggacaccagacccgagaacttgtgcatttaggtaatcccttggcatgccatcgaaggcattggcacatgatgtcctgtgtgcaacattgtcaaaatggtcgttttcttgaggaagcttcctgtatcagtaagcatgttaggtttgaatgtgtaaataagagagcaaaaacgattgaacaagctaaaaatattagttcaataaaagcaaactaatttccaaccattaaatcagtaaataaatgtctcgtggaacttaaatgtacagtgaaaacaaactatttccatgtgcccaaaaattaaacggataccttgcaggtacttgtttaagatgtacgtaattatataattactgaaaaattcaatctgcaacttaagtacagccagaaaagctagttattattttttcacaaagacggtacatgtggaacaaaatggacgatttgactacacatttaaaataagtaaccaaatgaataaactgtcaatatgatttatgaagcacacctgcacatgcatgagtgcatgataacataaaagcatgaactctgtcctatagactgaatgaatattaaaatcaaattagtccccaccaaccattgccatgcaaaaggaggccccgataatagatcatacttttattaacaaccatatttcaggaactctcaaattgacctccagaaagaatcttcaactaataactaattttagaatcctaaagaatgcacttatggaagattttgtgcaagtccttggatgagagggattgatcttttgccggccaaataaatgaagatcagaaaagggagagtacattgtggaaagactgccatttggacctcagaacaaacagaacacatcaaactcaaagcctgcaattagcagcaggatactgtgacgtaagttacataaccccactgaaaaagaggcacaccaagctgcttgccaggacatagggatcgatttgggaattgttaacatgtactcctcctaacaggcgctcaacagtatagtttgtaaaccataactcagatatcgtttggatgaaaacaacagtaggtttacattgtaggttaattaaaaaaactgcgagaagcaatcaacaaaagaaacagcaaagttagataacagacctttgctcttgtttggtccattccaggtaacgcttgactctaacttttactccaaagatgaaatgaggtgtgctctttgataagagaaggctcaccgtatcagcattttcaaatgtcacaaaaccgaaagtgtacttttcattccctggcttacagctaaggtagacattgatcacaggcccgaacttcctggaagaaataccatcgtaaaattattgaattgaatgtagtggtataatttgaaactttaaatcatattacacctagtattgtcctccaaactagtaaacataatacaaaggttagaagaaaatacttgaagtagtcccaaatattttccttagttaatctgccgccatcaaagttgatggtaatataaatcgtaaaatcggaaccttcaccaaagaaatccctatgtcggccacgaggatgagattgcctctgattgtgcatctcatggacatcagacccgagaacattaacttgtgcatttagataatcccttggcaagccatcacctggaatgttcaaagactgcaaatgcgcagaaaatgggatgtcaaaacctccactttgaccaacggggaggcatggaaacttaactccatgataacaactacctacctgaaactgaggctccaaatagagcgatggggattcataatcataccgcgttgaaggtgactgcagtaagggtagctgctggaggtgttgtattggggggaacctcatgtagtatgacttcgcctcattaatcaaggcttgtattgcctcatcccgggctgaaaatgcataccaactgatccaacttggctttgatatgttggcgtactgaacaatagcatttgcacatgatggctccaactgatccaacttggcttgtgccgcaaaaccagttgacattggagcatatgccccccgttcctgcaacacaagggacaaaatataaaaacccactgcaagccaatatttctgattggaaaaatcagcagttatttctaaaagattacaaggataacaattaaaccaaaatttggcagtagagaaaattagtgcaagcaaaaccggaaaccttgcatctatctctgtttgcacccacaaaagaggaaacatttgcaccaactcgtgtttttccacattgacccaaaattatgttttcctggttccaaatctgaagaacaaagtgcaaagttatctgttggatgcaaaacagaaactctatacccaccaacccagccaaaatatccatagtaagagaacgaacccaatgagcaagaactgttctttccaataacccttctcagaatccaaccaaaactagccgaacgctactcctcctgtaatccatagacctgcctccacaagaacacaccaaaagaagaaaagagaagttgtatatctacaaacaagaactattccagccaagaacataatctcggaattaaaccaataccactcagattgtactagatactccacgaacccctagaagagctcaccccgcaaagaatcacaagagtacaaaacat
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CDS seq | atgttttgtactcttgtgattctttgcgggatttggaaccaggaaaacataattttgggtcaatgtggaaaaacacgagttggtgcaaatgtttcctcttttgtgggtgcaaacagagatagatgcaaggaacggggggcatatgctccaatgtcaactggttttgcggcacaagccaagttggatcagttggagccatcatgtgcaaatgctattgttcagtacgccaacatatcaaagccaagttggatcagttggtatgcattttcagcccgggatgaggcaatacaagccttgattaatgaggcgaagtcatactacatgaggttccccccaatacaacacctccagcagctacccttactgcagtcaccttcaacgcggtatgattatgaatccccatcgctctatttggagcctcagtttcagtctttgaacattccaggtgatggcttgccaagggattatctaaatgcacaagttaatgttctcgggtctgatgtccatgagatgcacaatcagaggcaatctcatcctcgtggccgacatagggatttctttggtgaaggttccgattttacgatttatattaccatcaactttgatggcggcagattaactaaggaaaatatttgggactacttcaagaagttcgggcctgtgatcaatgtctaccttagctgtaagccagggaatgaaaagtacactttcggttttgtgacatttgaaaatgctgatacggtgagccttctcttatcaaagagcacacctcatttcatctttggagtaaaagttagagtcaagcgttacctggaatggaccaaacaagagcaaaggaagcttcctcaagaaaacgaccattttgacaatgttgcacacaggacatcatgtgccaatgccttcgatggcatgccaagggattacctaaatgcacaagttctcgggtctggtgtccctgagttgcacaatcagaggctatctcatcctcgtggctcacagagggatttctttggtcacaatcagaggcaatcccatcctcatggctcacagagggatttcttcggtcaaagtaccgagtttacgatttatattaccatcgctaagaacatattgacttggaaaaatattcgggactacttcaagcagcttcctcagagaaacgaccgttttgacaatgttgcacacaggacatcatgtgacaatgccattgagggtcactctggacaaaaaatgccgaatttcattgaactttcccaggagacactgacacatcaatttggagattttgattcacctctaacacataacctctctgagaagaaaacagaatctccagaagattaa
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Protein seq | MFCTLVILCGIWNQENIILGQCGKTRVGANVSSFVGANRDRCKERGAYAPMSTGFAAQAKLDQLEPSCANAIVQYANISKPSWISWYAFSARDEAIQALINEAKSYYMRFPPIQHLQQLPLLQSPSTRYDYESPSLYLEPQFQSLNIPGDGLPRDYLNAQVNVLGSDVHEMHNQRQSHPRGRHRDFFGEGSDFTIYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSKSTPHFIFGVKVRVKRYLEWTKQEQRKLPQENDHFDNVAHRTSCANAFDGMPRDYLNAQVLGSGVPELHNQRLSHPRGSQRDFFGHNQRQSHPHGSQRDFFGQSTEFTIYITIAKNILTWKNIRDYFKQLPQRNDRFDNVAHRTSCDNAIEGHSGQKMPNFIELSQETLTHQFGDFDSPLTHNLSEKKTESPED |
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Function | Putative zinc finger CCCH domain-containing protein 51 [UniProtKB/Swiss-Prot:Q84ZT0] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsCMeo_07g0021010 | OsCMeo_07g0021010.01 | Chr07 | 23162319 | 23167246 | - | NAM | ||
CDS seq | atgttttgtactcttgtgattctttgcgggatttggaaccaggaaaacataattttgggtcaatgtggaaaaacacgagttggtgcaaatgtttcctcttttgtgggtgcaaacagagatagatgcaaggaacggggggcatatgctccaatgtcaactggttttgcggcacaagccaagttggatcagttggagccatcatgtgcaaatgctattgttcagtacgccaacatatcaaagccaagttggatcagttggtatgcattttcagcccgggatgaggcaatacaagccttgattaatgaggcgaagtcatactacatgaggttccccccaatacaacacctccagcagctacccttactgcagtcaccttcaacgcggtatgattatgaatccccatcgctctatttggagcctcagtttcagtctttgaacattccaggtgatggcttgccaagggattatctaaatgcacaagttaatgttctcgggtctgatgtccatgagatgcacaatcagaggcaatctcatcctcgtggccgacatagggatttctttggtgaaggttccgattttacgatttatattaccatcaactttgatggcggcagattaactaaggaaaatatttgggactacttcaagaagttcgggcctgtgatcaatgtctaccttagctgtaagccagggaatgaaaagtacactttcggttttgtgacatttgaaaatgctgatacggtgagccttctcttatcaaagagcacacctcatttcatctttggagtaaaagttagagtcaagcgttacctggaatggaccaaacaagagcaaaggaagcttcctcaagaaaacgaccattttgacaatgttgcacacaggacatcatgtgccaatgccttcgatggcatgccaagggattacctaaatgcacaagttctcgggtctggtgtccctgagttgcacaatcagaggctatctcatcctcgtggctcacagagggatttctttggtcacaatcagaggcaatcccatcctcatggctcacagagggatttcttcggtcaaagtaccgagtttacgatttatattaccatcgctaagaacatattgacttggaaaaatattcgggactacttcaagcagcttcctcagagaaacgaccgttttgacaatgttgcacacaggacatcatgtgacaatgccattgagggtcactctggacaaaaaatgccgaatttcattgaactttcccaggagacactgacacatcaatttggagattttgattcacctctaacacataacctctctgagaagaaaacagaatctccagaagattaa
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Protein seq | MFCTLVILCGIWNQENIILGQCGKTRVGANVSSFVGANRDRCKERGAYAPMSTGFAAQAKLDQLEPSCANAIVQYANISKPSWISWYAFSARDEAIQALINEAKSYYMRFPPIQHLQQLPLLQSPSTRYDYESPSLYLEPQFQSLNIPGDGLPRDYLNAQVNVLGSDVHEMHNQRQSHPRGRHRDFFGEGSDFTIYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSKSTPHFIFGVKVRVKRYLEWTKQEQRKLPQENDHFDNVAHRTSCANAFDGMPRDYLNAQVLGSGVPELHNQRLSHPRGSQRDFFGHNQRQSHPHGSQRDFFGQSTEFTIYITIAKNILTWKNIRDYFKQLPQRNDRFDNVAHRTSCDNAIEGHSGQKMPNFIELSQETLTHQFGDFDSPLTHNLSEKKTESPED
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.785760 | 1.667254 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0583500 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39460 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os07g0583500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021070 | RBH | 0.0 | 1.003549 | 0.000000 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021090 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020840 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020950 | SBH | 0.000000 | 0.000000 | 1.309282 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0387300 | RBH | 0.0519155 | 0.1055555 | 0.85393 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021380 | SBH | 0.0 | 0.0 | 0.106967 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0399900 | RBH | 0.135419 | 0 | 5.922812 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0020690 | SBH | 0.000000 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020850 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020740 | SBH | 0.000000 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020990 | RBH | 0.0 | 0.0 | 0.283681 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020690 | SBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020600 | RBH | 0.0 | 0.584766 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020660 | RBH | 0.0 | 0.0 | 0.524500 |