Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0004600 | OGI:07011470 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:3631240-3633869 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatcctctacaagagcatttccctccacagaaaAtatgaaacccagccgagtccctgaccaagatctctttaccggtagctgcagaagtatactccaggaatgagtggcaatcaccacacatgcggacgttcttcacgacgcggatggtttcaccatgtcctgacattagaaggccatacatggcagctagcttcacgctatggtacatcaggaagtgcctcttctggtattcctcgacgtcgtgtagcacgaaggtggtgtccggttcatacccagccttcatgcactcaaggattagcacgtcgaggccagcgtagatgtccttggactggggatgtgacctatcccgtgcgaaaaatgagtgaatagagtTgccatgaaatgtccagctccttgctggaatcttacgcatacccttttcacgcatctTcagcCttgtgctctcagagcattgccatcttgctgatTctgagtagagatttgatgccaggacatatgtggatggatcctgtggttccagtgcgagtagatgcctcattgctagcctccgcatggtcatgtTgggctgccTgttacagctgtctagacaagatcgccaaaccaatgcactaggcttgaacggcattttaccgataagctgctctgcctcCtcaaaatgaccccagcatccaaggacatgaacaaatgctgcgtagtgttccacagctggttcaatgccatatatgcttgacatagaaaggaatagctccctacatttatcagcagaatttgagcttgtgtagctgcaagatgatatgaccaggagaaaggtaacagaatcaggtttgatgggcaatctctccatctgagacCacaggtccagtatctcatctccctggcgatgaagaagatgagaagtgatcagagcattcCatgaaaccaagtctctacaagGcattcgcttaaagacattgactgcagttTccaagGCcccacaCttgccatacatactaatgatcgcattaccaactccCtgagcactcagaagcccagatttTgcagcaaagcaatgcatttgcttTccgaattcagcaaaacctaaggctcCacAtgctccaagaacagtagtcaagatgaattcatcaatgaactgaacatcattgcttctaaacatcttaagGaaagtggaaagtgctttCtcatatTCcccatctctgaaacttgcagccagcaaagaattccaagcaatgtgaaaactctcCTCgtggcgccatttctcaaacagaagatgTGcatctccagacctgccacacttgatgcacatgtctatcaaagcggcatcgatccaaggagttgaaccgcagcCaCatttaatcgcaaatgcttgaaaCtgctcactcatcttcctctcCgcagtaatagcacaagcattcaggacAcctgtgacagttacatctgagatcTCcagtccatcctccagcaTctgcttaaacaacccgagtcctcgcagccctgaCtttctagcaaaggtaacccggacacctTccttgttgtggttaaacccagtcaacactgcattgtatgtaacaaaAttcctcacagGcatacggtcgaacacatccattgccatgtcaacaaggccaaactccatgtatccattgagtaacccggtccatgaaatcacatccttcgcaggcattctcTcaaacacatcaaccAcatcctcaatggaatgaccatgctccgcgtagaacccgacgagcgcgttgccaacgctcaaatccatctccagcccagacttgagcgacaacgcatgcaccgccgcgccCtcgtgcaggccgaacccctcggcggccgcagccaacagcgccgagagcgagaaccTgtcggccccaacgccgctgtcccgcatgtccccgaacagctcgaacgcctcgtcgtacctccCcagctcgaccagGccggacaggaccgtgtTccacgacgagacgtcccgtcgctccatcccgtcgaacaccttcagcgcgtcgtcgaagcggcgGCccttgaCgtacatcccgagcagcgcgttgtcgacgaggagcgagccgccgccgccgccgcacggggagttgcctttgacggccagggcgtgcacctgggacccgagccgcgggttcccgcggcgggcgcaggcggtgaggaggccgacgaaggtgtactcggtaggcgccatgcccgcgagccgcatgcgtccgagcagctccacccccgcggcggccggggagccgaggcgcgcgtggcccgagatgagcgcgctgtaggaggcggcgtcgCgggCGGGCATCCGCTCGAACACCCCCCGCGCATCCGCCAGCGCGCCCGCCCGGAGGTACCCGCACATGACGGCGTTCCAGGCGCGGGCGCCCGACGACGCCGCGGAGCCCGACTTGACGGCGACCGCGTGCGCCGCGCGCGGGTCGGCGGAAGCCGCGGCGGCGAGCGCACGGGTGTGGAGGCGGGTTCGCGGCGGCGGCGGCGAGGGGCCATGGGCGGGAGGAGGAGGCGGCGGCGGCGGCGGGAGGGGGCGGGAGGTGGGTGGAGGTTGGGGCGGGAGGAGGCGAGGCGGCGGAGCGGCGGATGAGGTGGAGATGGCCATTCATTTCACTC
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| CDS seq | ATGGCCATCTCCACCTCATCCGCCGCTCCGCCGCCTCGCCTCCTCCCGCCCCAACCTCCACCCACCTCCCGCCCCCTCCCGCCGCCGCCGCCGCCTCCTCCTCCCGCCCATGGCCCCTCGCCGCCGCCGCCGCGAACCCGCCTCCACACCCGTGCGCTCGCCGCCGCGGCTTCCGCCGACCCGCGCGCGGCGCACGCGGTCGCCGTCAAGTCGGGCTCCGCGGCGTCGTCGGGCGCCCGCGCCTGGAACGCCGTCATGTGCGGGTACCTCCGGGCGGGCGCGCTGGCGGATGCGCGGGGGGTGTTCGAGCGGATGCCCGcccGcgacgccgcctcctacagcgcgctcatctcgggccacgcgcgcctcggctccccggccgccgcgggggtggagctgctcggacgcatgcggctcgcgggcatggcgcctaccgagtacaccttcgtcggcctcctcaccgcctgcgcccgccgcgggaacccgcggctcgggtcccaggtgcacgccctggccgtcaaaggcaactccccgtgcggcggcggcggcggctcgctcctcgtcgacaacgcgctgctcgggatgtacGtcaaggGCcgccgcttcgacgacgcgctgaaggtgttcgacgggatggagcgacgggacgtctcgtcgtggAacacggtcctgtccggCctggtcgagctgGggaggtacgacgaggcgttcgagctgttcggggacatgcgggacagcggcgttggggccgacAggttctcgctctcggcgctgttggctgcggccgccgaggggttcggcctgcacgaGggcgcggcggtgcatgcgttgtcgctcaagtctgggctggagatggatttgagcgttggcaacgcgctcgtcgggttctacgcggagcatggtcattccattgaggatgTggttgatgtgtttgAgagaatgcctgcgaaggatgtgatttcatggaccgggttactcaatggatacatggagtttggccttgttgacatggcaatggatgtgttcgaccgtatgCctgtgaggaaTtttgttacatacaatgcagtgttgactgggtttaaccacaacaaggAaggtgtccgggttacctttgctagaaaGtcagggctgcgaggactcgggttgtttaagcagAtgctggaggatggactgGAgatctcagatgtaactgtcacaggTgtcctgaatgcttgtgctattactgcGgagaggaagatgagtgagcaGtttcaagcatttgcgattaaatGtGgctgcggttcaactccttggatcgatgccgctttgatagacatgtgcatcaagtgtggcaggtctggagatgCAcatcttctgtttgagaaatggcgccacGAGgagagttttcacattgcttggaattctttgctggctgcaagtttcagagatgggGAatatgaGaaagcactttccactttCcttaagatgtttagaagcaatgatgttcagttcattgatgaattcatcttgactactgttcttggagcaTgtGgagccttaggttttgctgaattcggAaagcaaatgcattgctttgctgcAaaatctgggcttctgagtgctcaGggagttggtaatgcgatcattagtatgtatggcaaGtgtgggGCcttggAaactgcagtcaatgtctttaagcgaatgCcttgtagagacttggtttcatGgaatgctctgatcacttctcatcttcttcatcgccagggagatgagatactggacctgtGgtctcagatggagagattgcccatcaaacctgattctgttacctttctcctggtcatatcatcttgcagctacacaagctcaaattctgctgataaatgtagggagctattcctttctatgtcaagcatatatggcattgaaccagctgtggaacactacgcagcatttgttcatgtccttggatgctggggtcattttgaGgaggcagagcagcttatcggtaaaatgccgttcaagcctagtgcattggtttggcgatcttgtctagacagctgtaacAggcagcccAacatgaccatgcggaggctagcaatgaggcatctactcgcactggaaccacaggatccatccacatatgtcctggcatcaaatctctactcagAatcagcaagatggcaatgctctgagagcacaaGgctgAagatgcgtgaaaagggtatgcgtaagattccagcaaggagctggacatttcatggcAactctattcactcatttttcgcacgggataggtcacatccccagtccaaggacatctacgctggcctcgacgtgctaatccttgagtgcatgaaggctgggtatgaaccggacaccaccttcgtgctacacgacgtcgaggaataccagaagaggcacttcctgatgtaccatagcgtgaagctagctgccatgtatggccttctaatgtcaggacatggtgaaaccatccgcgtcgtgaagaacgtccgcatgtgtggtgattgccactcattcctggagtatacttctgcagctaccggtaaagagatcttggtcagggactcggctgggtttcataTtttctgtggagggaaatgctcttgtagaggatag
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| Protein seq | MAISTSSAAPPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPRTRLHTRALAAAASADPRAAHAVAVKSGSAASSGARAWNAVMCGYLRAGALADARGVFERMPARDAASYSALISGHARLGSPAAAGVELLGRMRLAGMAPTEYTFVGLLTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNALLGMYVKGRRFDDALKVFDGMERRDVSSWNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYNAVLTGFNHNKEGVRVTFARKSGLRGLGLFKQMLEDGLEISDVTVTGVLNACAITAERKMSEQFQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEESFHIAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGDEILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYAAFVHVLGCWGHFEEAEQLIGKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEPQDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHPQSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHGETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCRG |
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| Function | Pentatricopeptide repeat-containing protein At5g03800 [UniProtKB/Swiss-Prot:Q9FFN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0004600 | OsLiXu_07g0004600.01 | Chr07 | 3631240 | 3633869 | - | NAM | ||
| CDS seq | ATGGCCATCTCCACCTCATCCGCCGCTCCGCCGCCTCGCCTCCTCCCGCCCCAACCTCCACCCACCTCCCGCCCCCTCCCGCCGCCGCCGCCGCCTCCTCCTCCCGCCCATGGCCCCTCGCCGCCGCCGCCGCGAACCCGCCTCCACACCCGTGCGCTCGCCGCCGCGGCTTCCGCCGACCCGCGCGCGGCGCACGCGGTCGCCGTCAAGTCGGGCTCCGCGGCGTCGTCGGGCGCCCGCGCCTGGAACGCCGTCATGTGCGGGTACCTCCGGGCGGGCGCGCTGGCGGATGCGCGGGGGGTGTTCGAGCGGATGCCCGcccGcgacgccgcctcctacagcgcgctcatctcgggccacgcgcgcctcggctccccggccgccgcgggggtggagctgctcggacgcatgcggctcgcgggcatggcgcctaccgagtacaccttcgtcggcctcctcaccgcctgcgcccgccgcgggaacccgcggctcgggtcccaggtgcacgccctggccgtcaaaggcaactccccgtgcggcggcggcggcggctcgctcctcgtcgacaacgcgctgctcgggatgtacGtcaaggGCcgccgcttcgacgacgcgctgaaggtgttcgacgggatggagcgacgggacgtctcgtcgtggAacacggtcctgtccggCctggtcgagctgGggaggtacgacgaggcgttcgagctgttcggggacatgcgggacagcggcgttggggccgacAggttctcgctctcggcgctgttggctgcggccgccgaggggttcggcctgcacgaGggcgcggcggtgcatgcgttgtcgctcaagtctgggctggagatggatttgagcgttggcaacgcgctcgtcgggttctacgcggagcatggtcattccattgaggatgTggttgatgtgtttgAgagaatgcctgcgaaggatgtgatttcatggaccgggttactcaatggatacatggagtttggccttgttgacatggcaatggatgtgttcgaccgtatgCctgtgaggaaTtttgttacatacaatgcagtgttgactgggtttaaccacaacaaggAaggtgtccgggttacctttgctagaaaGtcagggctgcgaggactcgggttgtttaagcagAtgctggaggatggactgGAgatctcagatgtaactgtcacaggTgtcctgaatgcttgtgctattactgcGgagaggaagatgagtgagcaGtttcaagcatttgcgattaaatGtGgctgcggttcaactccttggatcgatgccgctttgatagacatgtgcatcaagtgtggcaggtctggagatgCAcatcttctgtttgagaaatggcgccacGAGgagagttttcacattgcttggaattctttgctggctgcaagtttcagagatgggGAatatgaGaaagcactttccactttCcttaagatgtttagaagcaatgatgttcagttcattgatgaattcatcttgactactgttcttggagcaTgtGgagccttaggttttgctgaattcggAaagcaaatgcattgctttgctgcAaaatctgggcttctgagtgctcaGggagttggtaatgcgatcattagtatgtatggcaaGtgtgggGCcttggAaactgcagtcaatgtctttaagcgaatgCcttgtagagacttggtttcatGgaatgctctgatcacttctcatcttcttcatcgccagggagatgagatactggacctgtGgtctcagatggagagattgcccatcaaacctgattctgttacctttctcctggtcatatcatcttgcagctacacaagctcaaattctgctgataaatgtagggagctattcctttctatgtcaagcatatatggcattgaaccagctgtggaacactacgcagcatttgttcatgtccttggatgctggggtcattttgaGgaggcagagcagcttatcggtaaaatgccgttcaagcctagtgcattggtttggcgatcttgtctagacagctgtaacAggcagcccAacatgaccatgcggaggctagcaatgaggcatctactcgcactggaaccacaggatccatccacatatgtcctggcatcaaatctctactcagAatcagcaagatggcaatgctctgagagcacaaGgctgAagatgcgtgaaaagggtatgcgtaagattccagcaaggagctggacatttcatggcAactctattcactcatttttcgcacgggataggtcacatccccagtccaaggacatctacgctggcctcgacgtgctaatccttgagtgcatgaaggctgggtatgaaccggacaccaccttcgtgctacacgacgtcgaggaataccagaagaggcacttcctgatgtaccatagcgtgaagctagctgccatgtatggccttctaatgtcaggacatggtgaaaccatccgcgtcgtgaagaacgtccgcatgtgtggtgattgccactcattcctggagtatacttctgcagctaccggtaaagagatcttggtcagggactcggctgggtttcataTtttctgtggagggaaatgctcttgtagaggatag
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| Protein seq | MAISTSSAAPPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPRTRLHTRALAAAASADPRAAHAVAVKSGSAASSGARAWNAVMCGYLRAGALADARGVFERMPARDAASYSALISGHARLGSPAAAGVELLGRMRLAGMAPTEYTFVGLLTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNALLGMYVKGRRFDDALKVFDGMERRDVSSWNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYNAVLTGFNHNKEGVRVTFARKSGLRGLGLFKQMLEDGLEISDVTVTGVLNACAITAERKMSEQFQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEESFHIAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGDEILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYAAFVHVLGCWGHFEEAEQLIGKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEPQDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHPQSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHGETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.546297 | 0.177935 | 0.175064 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0172600 | RBH | 1.388731 | 2.394686 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07620 | RBH | 0.937082 | 1.605894 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0172600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004610 | RBH | 0.396809 | 0.997770 | 1.324691 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004570 | RBH | 0.048889 | 0.0 | 0.365454 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004470 | RBH | 1.333823 | 0.0 | 1.136789 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004400 | RBH | 0.162565 | 0.022522 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004500 | RBH | 4.139843 | 3.938897 | 1.289838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0064300 | RBH | 6.5407625 | 2.8364605 | 2.7482025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005010 | RBH | 0.036302 | 0.060786 | 0.163859 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0067800 | RBH | 6.459793 | 2.764138 | 3.3998215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004490 | RBH | 0.281933 | 0.046201 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004480 | RBH | 0.589508 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004520 | RBH | 1.708381 | 4.801713 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037560 | RBH | 0.413289 | 0.178746 | 0.261122 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004480 | RBH | 0.267569 | 1.037044 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004650 | RBH | 0.175485 | 1.014557 | 0.223380 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004450 | RBH | 0.479281 | 1.503062 | 0.895341 |
