Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os07g0172600 OGI:07011470 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr07:3817978-3820720
Gene Symbol -
DNA seq

TCTGAAGGAAATCATAGTGATGTACAAAAAACCTTAATACAAGGATATCATTTCTTCTATACTTTCTAAATCAATTTACTACAGAGAGGGTGTACAAAGATGTCAAAATTGGTACCCAGTTTCTATCCTCTACAAGAGCATTTCCCTCCACAGAAAATATGAAACCCAGCCGAGTCCCTGACCAAGATCTCTTTACCGGTAGCTGCAGAAGTATACTCCAGGAATGAGTGGCAATCACCACACATGCGGACGTTCTTCACGACGCGGATGGTTTCACCATGTCCTGACATTAGAAGGCCATACATGGCAGCTAGCTTCACGCTATGGTACATCAGGAAGTGCCTCTTCTGGTATTCCTCGACGTCGTGTAGCACGAAGGTGGTGTCCGGTTCATACCCAGCCTTCATGCACTCAAGGATTAGCACGTCGAGGCCAGCGTAGATGTCCTTGGACTGGGGATGTGACCTATCCCGTGCGAAAAATGAGTGAATAGAGTTGCCATGAAATGTCCAGCTCCTTGCTGGAATCTTACGCATACCCTTTTCACGCATCTTCAGCCTTGTGCTCTCAGAGCATTGCCATCTTGCTGATTCTGAGTAGAGATTTGATGCCAGGACATATGTGGATGGATCCTGTGGTTCCAGTGCGAGTAGATGCCTCATTGCTAGCCTCCGCATGGTCATGTTGGGCTGCCTGTTACAGCTGTCTAGACAAGATCGCCAAACCAATGCACTAGGCTTGAACGGCATTTTACCGATAAGCTGCTCTGCCTCCTCAAAATGACCCCAGCATCCAAGGACATGAACAAATGCTGCGTAGTGTTCCACAGCTGGTTCAATGCCATATATGCTTGACATAGAAAGGAATAGCTCCCTACATTTATCAGCAGAATTTGAGCTTGTGTAGCTGCAAGATGATATGACCAGGAGAAAGGTAACAGAATCAGGTTTGATGGGCAATCTCTCCATCTGAGACCACAGGTCCAGTATCTCATCTCCCTGGCGATGAAGAAGATGAGAAGTGATCAGAGCATTCCATGAAACCAAGTCTCTACAAGGCATTCGCTTAAAGACATTGACTGCAGTTTCCAATGCCCCACACTTGCCATACATACTAATGATCGCATTACCAACTCCCTGAGCACTCAGAAGCCCAGATTTTGCAGCAAAGCAATGCATTTGCTTTCCGAATTCAGCAAAACCTAAGGCTCCACATGCTCCAAGAACAGTAGTCAAGATGAATTCATCAATGAACTGAACATCATTGCTTCTAAACATCTTAAGGAAAGTGGAAAGTGCTTTCTCATACTCCCCATCTCTGAAACTTGCAGCCAGCAAAGAATTCCAAGCAATGTGAAAACTCTCCTCGTGGCGCCATTTCTCAAACAGAAGATGTGCATCTCCAGACCTGCCACACTTGATGCACATGTCTATCAAAGCGGCATCGATCCAAGGAGTTGAACCGCAGCCACATTTAATCGCAAATGCTTGAACCTGCTCACTCATCTTCCTCTCCGCAGTAATAGCACAAGCATTCAGGACACCTGTGACAGTTACATCTGAGATCTCCAGTCCATCCTCCAGCATCTGCTTAAACAACCCGAGTCCTCGCAGCCCTGACTTTCTAGCAAAGGTAACCCGGACACCTTCCTTGTTGTGGTTAAACCCAGTCAACACTGCATTGTATGTAACAAAATTCCTCACAGGCATACGGTCGAACACATCCATTGCCATGTCAACAAGGCCAAACTCCATGTATCCATTGAGTAACCCGGTCCATGAAATCACATCCTTCGCAGGCATTCTCTCAAACACATCAACCACATCCTCAATGGAATGACCATGCTCCGCGTAGAACCCGACGAGCGCGTTGCCAACGCTCAAATCCATCTCCAGCCCAGACTTGAGCGACAACGCATGCACCGCCGCGCCCTCGTGCAGGCCGAACCCCTCGGCGGCCGCAGCCAACAGCGCCGAGAGCGAGAACCTGTCGGCCCCAACGCCGCTGTCCCGCATGTCCCCGAACAGCTCGAACGCCTCGTCGTACCTCCCCAGCTCGACCAGGCCGGACAGGACCGTGTTCCACGACGAGACGTCCCGTCGCTCCATCCCGTCGAACACCTTCAGCGCGTCGTCGAAGCGGCCGCCCTTGACGTACATCCCGAGCAGCGCGTTGTCGACGAGGAGCGAGCCGCCGCCGCCGCCGCACGGGGAGTTGCCTTTGACGGCCAGGGCGTGCACCTGGGACCCGAGCCGCGGGTTCCCGCGGCGGGCGCAGGCGGTGAGGAGGCCGACGAAGGTGTACTCGGTAGGCGCCATGCCCGCGAGCCGCATGCGTCCGAGCAGCTCCACCCCCGCGGCGGCCGGGGAGCCGAGGCGCGCGTGGCCCGAGATGAGCGCGCTGTAGGAGGCGGCGTCGCGGGCGGGCATCCGCTCGAACACCCCCCGCGCATCCGCCAGCGCGCCCGCCCGGAGGTACCCGCACATGACGGCGTTCCAGGCGCGGGCGCCCGACGACGCCGCGGAGCCCGACTTGACGGCGACCGCGTGCGCCGCGCGCGGGTCGGCGGAAGCCGCGGCGGCGAGCGCACGGGTGTGGAGGCGGGTTCGCGGCGGCGGCGGCGAGGGGCCATGGGCGGGAGGAGGAGGCGGCGGCGGCGGCGGGAGGGGGCGGGAGGTGGGTGGAGGTTGGGGCGGGAGGAGGCGAGGCGGCGGAGCGGCGGATGAGGTGGAGATGGCCATTC

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CDS seq

ATGGCCATCTCCACCTCATCCGCCGCTCCGCCGCCTCGCCTCCTCCCGCCCCAACCTCCACCCACCTCCCGCCCCCTCCCGCCGCCGCCGCCGCCTCCTCCTCCCGCCCATGGCCCCTCGCCGCCGCCGCCGCGAACCCGCCTCCACACCCGTGCGCTCGCCGCCGCGGCTTCCGCCGACCCGCGCGCGGCGCACGCGGTCGCCGTCAAGTCGGGCTCCGCGGCGTCGTCGGGCGCCCGCGCCTGGAACGCCGTCATGTGCGGGTACCTCCGGGCGGGCGCGCTGGCGGATGCGCGGGGGGTGTTCGAGCGGATGCCCGCCCGCGACGCCGCCTCCTACAGCGCGCTCATCTCGGGCCACGCGCGCCTCGGCTCCCCGGCCGCCGCGGGGGTGGAGCTGCTCGGACGCATGCGGCTCGCGGGCATGGCGCCTACCGAGTACACCTTCGTCGGCCTCCTCACCGCCTGCGCCCGCCGCGGGAACCCGCGGCTCGGGTCCCAGGTGCACGCCCTGGCCGTCAAAGGCAACTCCCCGTGCGGCGGCGGCGGCGGCTCGCTCCTCGTCGACAACGCGCTGCTCGGGATGTACGTCAAGGGCGGCCGCTTCGACGACGCGCTGAAGGTGTTCGACGGGATGGAGCGACGGGACGTCTCGTCGTGGAACACGGTCCTGTCCGGCCTGGTCGAGCTGGGGAGGTACGACGAGGCGTTCGAGCTGTTCGGGGACATGCGGGACAGCGGCGTTGGGGCCGACAGGTTCTCGCTCTCGGCGCTGTTGGCTGCGGCCGCCGAGGGGTTCGGCCTGCACGAGGGCGCGGCGGTGCATGCGTTGTCGCTCAAGTCTGGGCTGGAGATGGATTTGAGCGTTGGCAACGCGCTCGTCGGGTTCTACGCGGAGCATGGTCATTCCATTGAGGATGTGGTTGATGTGTTTGAGAGAATGCCTGCGAAGGATGTGATTTCATGGACCGGGTTACTCAATGGATACATGGAGTTTGGCCTTGTTGACATGGCAATGGATGTGTTCGACCGTATGCCTGTGAGGAATTTTGTTACATACAATGCAGTGTTGACTGGGTTTAACCACAACAAGGAAGGTGTCCGGGTTACCTTTGCTAGAAAGTCAGGGCTGCGAGGACTCGGGTTGTTTAAGCAGATGCTGGAGGATGGACTGGAGATCTCAGATGTAACTGTCACAGGTGTCCTGAATGCTTGTGCTATTACTGCGGAGAGGAAGATGAGTGAGCAGGTTCAAGCATTTGCGATTAAATGTGGCTGCGGTTCAACTCCTTGGATCGATGCCGCTTTGATAGACATGTGCATCAAGTGTGGCAGGTCTGGAGATGCACATCTTCTGTTTGAGAAATGGCGCCACGAGGAGAGTTTTCACATTGCTTGGAATTCTTTGCTGGCTGCAAGTTTCAGAGATGGGGAGTATGAGAAAGCACTTTCCACTTTCCTTAAGATGTTTAGAAGCAATGATGTTCAGTTCATTGATGAATTCATCTTGACTACTGTTCTTGGAGCATGTGGAGCCTTAGGTTTTGCTGAATTCGGAAAGCAAATGCATTGCTTTGCTGCAAAATCTGGGCTTCTGAGTGCTCAGGGAGTTGGTAATGCGATCATTAGTATGTATGGCAAGTGTGGGGCATTGGAAACTGCAGTCAATGTCTTTAAGCGAATGCCTTGTAGAGACTTGGTTTCATGGAATGCTCTGATCACTTCTCATCTTCTTCATCGCCAGGGAGATGAGATACTGGACCTGTGGTCTCAGATGGAGAGATTGCCCATCAAACCTGATTCTGTTACCTTTCTCCTGGTCATATCATCTTGCAGCTACACAAGCTCAAATTCTGCTGATAAATGTAGGGAGCTATTCCTTTCTATGTCAAGCATATATGGCATTGAACCAGCTGTGGAACACTACGCAGCATTTGTTCATGTCCTTGGATGCTGGGGTCATTTTGAGGAGGCAGAGCAGCTTATCGGTAAAATGCCGTTCAAGCCTAGTGCATTGGTTTGGCGATCTTGTCTAGACAGCTGTAACAGGCAGCCCAACATGACCATGCGGAGGCTAGCAATGAGGCATCTACTCGCACTGGAACCACAGGATCCATCCACATATGTCCTGGCATCAAATCTCTACTCAGAATCAGCAAGATGGCAATGCTCTGAGAGCACAAGGCTGAAGATGCGTGAAAAGGGTATGCGTAAGATTCCAGCAAGGAGCTGGACATTTCATGGCAACTCTATTCACTCATTTTTCGCACGGGATAGGTCACATCCCCAGTCCAAGGACATCTACGCTGGCCTCGACGTGCTAATCCTTGAGTGCATGAAGGCTGGGTATGAACCGGACACCACCTTCGTGCTACACGACGTCGAGGAATACCAGAAGAGGCACTTCCTGATGTACCATAGCGTGAAGCTAGCTGCCATGTATGGCCTTCTAATGTCAGGACATGGTGAAACCATCCGCGTCGTGAAGAACGTCCGCATGTGTGGTGATTGCCACTCATTCCTGGAGTATACTTCTGCAGCTACCGGTAAAGAGATCTTGGTCAGGGACTCGGCTGGGTTTCATATTTTCTGTGGAGGGAAATGCTCTTGTAGAGGATAG

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Protein seq

MAISTSSAAPPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPRTRLHTRALAAAASADPRAAHAVAVKSGSAASSGARAWNAVMCGYLRAGALADARGVFERMPARDAASYSALISGHARLGSPAAAGVELLGRMRLAGMAPTEYTFVGLLTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNALLGMYVKGGRFDDALKVFDGMERRDVSSWNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYNAVLTGFNHNKEGVRVTFARKSGLRGLGLFKQMLEDGLEISDVTVTGVLNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEESFHIAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGDEILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYAAFVHVLGCWGHFEEAEQLIGKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEPQDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHPQSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHGETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCRG

Function Pentatricopeptide repeat-containing protein At5g03800 [UniProtKB/Swiss-Prot:Q9FFN1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os07g0172600 Os07t0172600-00 Chr07 3817978 3820720 - irgsp1_rep
CDS seq

ATGGCCATCTCCACCTCATCCGCCGCTCCGCCGCCTCGCCTCCTCCCGCCCCAACCTCCACCCACCTCCCGCCCCCTCCCGCCGCCGCCGCCGCCTCCTCCTCCCGCCCATGGCCCCTCGCCGCCGCCGCCGCGAACCCGCCTCCACACCCGTGCGCTCGCCGCCGCGGCTTCCGCCGACCCGCGCGCGGCGCACGCGGTCGCCGTCAAGTCGGGCTCCGCGGCGTCGTCGGGCGCCCGCGCCTGGAACGCCGTCATGTGCGGGTACCTCCGGGCGGGCGCGCTGGCGGATGCGCGGGGGGTGTTCGAGCGGATGCCCGCCCGCGACGCCGCCTCCTACAGCGCGCTCATCTCGGGCCACGCGCGCCTCGGCTCCCCGGCCGCCGCGGGGGTGGAGCTGCTCGGACGCATGCGGCTCGCGGGCATGGCGCCTACCGAGTACACCTTCGTCGGCCTCCTCACCGCCTGCGCCCGCCGCGGGAACCCGCGGCTCGGGTCCCAGGTGCACGCCCTGGCCGTCAAAGGCAACTCCCCGTGCGGCGGCGGCGGCGGCTCGCTCCTCGTCGACAACGCGCTGCTCGGGATGTACGTCAAGGGCGGCCGCTTCGACGACGCGCTGAAGGTGTTCGACGGGATGGAGCGACGGGACGTCTCGTCGTGGAACACGGTCCTGTCCGGCCTGGTCGAGCTGGGGAGGTACGACGAGGCGTTCGAGCTGTTCGGGGACATGCGGGACAGCGGCGTTGGGGCCGACAGGTTCTCGCTCTCGGCGCTGTTGGCTGCGGCCGCCGAGGGGTTCGGCCTGCACGAGGGCGCGGCGGTGCATGCGTTGTCGCTCAAGTCTGGGCTGGAGATGGATTTGAGCGTTGGCAACGCGCTCGTCGGGTTCTACGCGGAGCATGGTCATTCCATTGAGGATGTGGTTGATGTGTTTGAGAGAATGCCTGCGAAGGATGTGATTTCATGGACCGGGTTACTCAATGGATACATGGAGTTTGGCCTTGTTGACATGGCAATGGATGTGTTCGACCGTATGCCTGTGAGGAATTTTGTTACATACAATGCAGTGTTGACTGGGTTTAACCACAACAAGGAAGGTGTCCGGGTTACCTTTGCTAGAAAGTCAGGGCTGCGAGGACTCGGGTTGTTTAAGCAGATGCTGGAGGATGGACTGGAGATCTCAGATGTAACTGTCACAGGTGTCCTGAATGCTTGTGCTATTACTGCGGAGAGGAAGATGAGTGAGCAGGTTCAAGCATTTGCGATTAAATGTGGCTGCGGTTCAACTCCTTGGATCGATGCCGCTTTGATAGACATGTGCATCAAGTGTGGCAGGTCTGGAGATGCACATCTTCTGTTTGAGAAATGGCGCCACGAGGAGAGTTTTCACATTGCTTGGAATTCTTTGCTGGCTGCAAGTTTCAGAGATGGGGAGTATGAGAAAGCACTTTCCACTTTCCTTAAGATGTTTAGAAGCAATGATGTTCAGTTCATTGATGAATTCATCTTGACTACTGTTCTTGGAGCATGTGGAGCCTTAGGTTTTGCTGAATTCGGAAAGCAAATGCATTGCTTTGCTGCAAAATCTGGGCTTCTGAGTGCTCAGGGAGTTGGTAATGCGATCATTAGTATGTATGGCAAGTGTGGGGCATTGGAAACTGCAGTCAATGTCTTTAAGCGAATGCCTTGTAGAGACTTGGTTTCATGGAATGCTCTGATCACTTCTCATCTTCTTCATCGCCAGGGAGATGAGATACTGGACCTGTGGTCTCAGATGGAGAGATTGCCCATCAAACCTGATTCTGTTACCTTTCTCCTGGTCATATCATCTTGCAGCTACACAAGCTCAAATTCTGCTGATAAATGTAGGGAGCTATTCCTTTCTATGTCAAGCATATATGGCATTGAACCAGCTGTGGAACACTACGCAGCATTTGTTCATGTCCTTGGATGCTGGGGTCATTTTGAGGAGGCAGAGCAGCTTATCGGTAAAATGCCGTTCAAGCCTAGTGCATTGGTTTGGCGATCTTGTCTAGACAGCTGTAACAGGCAGCCCAACATGACCATGCGGAGGCTAGCAATGAGGCATCTACTCGCACTGGAACCACAGGATCCATCCACATATGTCCTGGCATCAAATCTCTACTCAGAATCAGCAAGATGGCAATGCTCTGAGAGCACAAGGCTGAAGATGCGTGAAAAGGGTATGCGTAAGATTCCAGCAAGGAGCTGGACATTTCATGGCAACTCTATTCACTCATTTTTCGCACGGGATAGGTCACATCCCCAGTCCAAGGACATCTACGCTGGCCTCGACGTGCTAATCCTTGAGTGCATGAAGGCTGGGTATGAACCGGACACCACCTTCGTGCTACACGACGTCGAGGAATACCAGAAGAGGCACTTCCTGATGTACCATAGCGTGAAGCTAGCTGCCATGTATGGCCTTCTAATGTCAGGACATGGTGAAACCATCCGCGTCGTGAAGAACGTCCGCATGTGTGGTGATTGCCACTCATTCCTGGAGTATACTTCTGCAGCTACCGGTAAAGAGATCTTGGTCAGGGACTCGGCTGGGTTTCATATTTTCTGTGGAGGGAAATGCTCTTGTAGAGGATAG

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Protein seq

MAISTSSAAPPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPRTRLHTRALAAAASADPRAAHAVAVKSGSAASSGARAWNAVMCGYLRAGALADARGVFERMPARDAASYSALISGHARLGSPAAAGVELLGRMRLAGMAPTEYTFVGLLTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNALLGMYVKGGRFDDALKVFDGMERRDVSSWNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYNAVLTGFNHNKEGVRVTFARKSGLRGLGLFKQMLEDGLEISDVTVTGVLNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEESFHIAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGDEILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYAAFVHVLGCWGHFEEAEQLIGKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEPQDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHPQSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHGETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCRG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0172600 RBH 1.388731 2.394686 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g07620 RBH 0.937082 1.605894 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os03g0795200 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0004610 RBH 0.396809 0.997770 1.324691
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0004570 RBH 0.048889 0.0 0.365454
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0004470 RBH 1.333823 0.0 1.136789
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0004400 RBH 0.162565 0.022522 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0004500 RBH 4.139843 3.938897 1.289838
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0064300 RBH 6.5407625 2.8364605 2.7482025
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0005010 RBH 0.036302 0.060786 0.163859
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0067800 RBH 6.459793 2.764138 3.3998215
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0004490 RBH 0.281933 0.046201 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0004480 RBH 0.589508 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0004520 RBH 1.708381 4.801713 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0004600 RBH 0.546297 0.177935 0.175064
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0004480 RBH 0.267569 1.037044 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G004650 RBH 0.175485 1.014557 0.223380
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0004450 RBH 0.479281 1.503062 0.895341
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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