Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0003950 | OGI:07009950 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:3250817-3255978 | ||||||||
| Gene Symbol | WAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1 | ||||||||||
| DNA seq | tactgacgacaaggtaatgccaactacagtactaatcagaatctccatctcagttacaagcatggtgaagagttaatagagttgtcgtgtctccctaccacaagaactcagtgagatggcaacgatgcatttggccattcccagagaagctcataaggttgatgcagctctccctcctggcaaacctcatcttgacccgacgccattcttctgaagacagcgatctgggaagcgaagcctggttcatcgcctgatccgccaacgccactgaactcgacgctgtagttgtgcttttctgcgagtccggtagcccagtgctggaactgggatcttgtccactcgaacttgtggtcatggtttcggaacttgcaaggaccagcgttttcttctggttcttcttccttgtttggcatagctgatctctggaggatagggttgtattcatagttgggtgttgaaacaatcagcaccgtagggcagaacgaactcaAgacgacgtcgccaaataaacttgcttggtcctcctctacgtgctcaatcacctgcaagtagctttggtcagtcgaatagcatgtccaactaaatctaatgtttgagagatcaaagagaaatccacatcagcatttgtaaggatggacttcccactgtactactatgaacaaaataatgaatccacatcagcatttctaaggatggacttcccattgtactactatacaaatgtgattaggctatgtgattcttaatccaatcaattaatcgtggtatccatgtactagaggcaattgagaagacagcagaaacagttcaggagtaactgacctcaagacaagtgccaatgtcaaatctgtataagcgagaatcaaaatccgttatagaaccatcatagagcacagctgttggaacacttgtctgcatcaacgatttcttgctcagcttctgatgaagGctctgcaaattcagagagatgaaaggagtcattgccaagcattggagagaacaaaagggatggtttaaagggtgaactaactatcaacagtcatcaaggctctgttacgtacctttgctgctcgtgtgagacccttccgagaaatgtcaacaccgacaactttttcaagggttgttggatgctcaagcaatgaatcaagaaggctaccagatccacagccaaaatcaacctgaacaaattacttcaatagtgataagctaatatgcttggcaaatatggaagtaggatgagaagaatatttaccaatgtggtagcatgcagctcattgatgtaccgaacagcgaattccactctttgtttagataaaggaggattaaacaaggctttttccattctatcttctaatggttcagttacctgcaatacctttacagagaactccaagaagcaattgtctgcaaggatggttaaaacttgagcatagtgcttcagccaaattcaagctggtaatgaaaattatcagactgaggtgttaagattggacctcacctctagatatcttggaaaggtcatgagaaaactccttagctgcagcaaggatcaaatccttaggaggcaattcagctatgaaacatgcgctttgattaactgacagctgactcacacatgattcaatctgattcttaacagccccagtccctatctcaaactcaaactcattgttgctttctagcgtatatctgtttgttttgtccttcaccaccaaggaagcagtatagcttatgcaagtcaatgatccatgggatggaaaaacaccagaatctggaccatcaatgtgtgctaaaactgcattgttttcaagcttttgttttgaggtatccatagaaagcgatccaactgtactgcatgcacttgagtcatcacctcctctgttgccataaatagataagaacatggcaaattcatgcaaaaaattatctggacatattgtgaagccatcagtgctcttagaatgagagagcttcagtacatgcttgttcggttgcttgaaataactacagaaccaaatcaacaccttcaatgaagaattgtgaatggcatcagattccttgctccaagtatcagctgtcgaatactccaataaaagctcctgcttctttgaatatattttgacatcacatttgaacatatctgggttttccttgtcattctttccatcactagcacactgattttcagcattctttagcacgtccatctcctcggagcttacaggtgatcctaacactttacaagaggcacttaccctattgacagcgaagtaggctaggctctgctagtctgtgaaggcgacaaaatgagcagagaagatctcgtggagagagacccttccaactagaacgagaatacacagatggaagctctgccaccagaattgaatccctggatatcttgtaattcccatctggtgatttgcccagaagaatcctgagttaccaaaaagcaagttattcagaagaattagaaactaagatgagaacagaaggtgtgcctaaacaatagagaaaatcaattcaaatgatggaagagtagtagtcgagtagatgacagtgtgaagaaaaatcagatcaagatctatctacaaccagatgattcttataaaaaaatgaagtatgcatattgaattaaactaaagtcaaaatatatctcatacaagtgacataatcaacaaatcgatacctgtaatagttggataaggtaacatcttcagtatgaagctctgagtctctccttgtatatccaacattagccaaaattgcatctccataaattgtttgaccagaaatgaaggaagctcgcttatttattaggctctccatatagccatctccaagagaagaaaccacattgtgtgatatctcagaaacaaattgcacatttggagctgagaaatatagccttatctcagaagatgctttgccaacagttctgcagtgagacaattttaagattatcagcacaccaaaataatgacaatggtcagaagagaaggctcggcacaatactgaccttgaaacaacagcgtgggaggaatcacttgcagagagcttagacactatgtcacccatgtaatgttcattatgtgataaagtaagtcttattgtcttaggttcatcctccatcatacaaggaacaaaaatcccatctacttctatgggatccgttatgccagaccaatgctgaagtgccaaatcaacagcctcaggggaataaggcttctgactccaaatccagaagttgctatcactgacagagacaccaggggattttttggcagcattatagattaatgataaaaccaagagaggatcaaactccgctttggggtcaataagtttacacagtccaatgaccttcacatcacatgcagcaattgctgacataggaatcataccaaagcggtcccggttcttctgaatgtcacacacatgtggccaataagaggatgagacgacgaggggaagttctgaatagaagagtaggaaaaaaaaagacagacatgttagaaaaggtcggttagaacaaattaattgtttttcagttacatctgatgctctgaataataatatgattatatagccgcatgcttcaactataatcctgtattcttgtgtacacaaaatgattcagacttcaatattggtatttggtgatcatgtgacatgtctatgtaaagaagaatgtgtaccaaagcaggttgaaactgcagaaacatagaaagcaaagccttaagggaaatgttttttgtaggaagctcgatggtccggtctctttaccacatagatacccataacctcttaattccagtaatacagagtctttttTaactccaattataagagttgcaatggttatgatcatgcaaccctacgacatacacagcctatcataaggatcctatatccctattacactcctcaattgccagcagagcatagcattccactcaaatatgtaacatcatgaatatgaaaacttccttttgctgtagccttctgttgtgtgcaccttaatccctgaactacaatgacacaacaccaagatcaagcggaaatactaacctcatctgcgaaaaaaaaccagatatgcgagcataagttcatcccatgcttcttcaggagtactgggagcatttgcagtgggctgaataccaagctacaacgaagacaataaaagaaatggtaatcaccataggtccacagcatgaacaacatttcacatagtaatgatatcatatatcataggtacatagcttatccgatagagaaatacaaaggagctaggttactgtgcagcttgatcactaacatcgatggcattggtttgtcagaacagaaaacagagggtactatcaaaagaaatggcaacaaagacaatgagcaacacaattaggtgctcactcaggaattgaataaccaaactaaggtgagatttTgactatttgagacttgagagaactccaccttgcacttgtgacattcctcaattcctcataggtgagacacaattgctaactgaatcgtgcattgtgcatatcgccgtatctaatcacaaacttaaaggctacacgaaatctctatgtatatggaagatgattttgcaactacacatgtaaagcaaaaaaaaaaggtgaagttgcatgccaccaccacaatgctcatcaataccttgtcgagggcaatctgcgcggcggcttgctcggcgtccttcttcctgacgaaggtgcccggggtgacgacggtgaggccggggatgtcgagcgagcagcggtagacgctcctggtctgctgcggcagcgcgaggccggggcagccgccgtcgacggcctcccgcacctcctccacgctgtagcacgccttggcgccgtacttctggtggatcaccgccttgggcgtcaccgtcggcgccgccggcatccctcgcttcgatcccccgccgcctctcagccgcaacggcatcaaacgcccaaaaaaaacaaacaaaaaaaaacaaacaaatgcgattgtaacgaaggggattttcgcaatcgatcgacgcaggaactgaggcggatggggagggggtggtcgccaatctcgacgcgcccgaagcggaatcggggggtgggccggggggagtgatgaagcgagaggaggttagcgggtgaagtggg
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| CDS seq | atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttatgctcgcatatctgaacttcccctcgtcgtctcatcctcttattggccacatgtgtaagaaccgggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgacatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctagcctagcctacttcgctgtcaataggtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgtgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaaggagttttctcatgacctttccaagatatctagagacaattgcttcttggagttctctgtaaaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaagagCcttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacagctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtgattgagcacgtagaggaggaccaagcaagtttatttggcgacgtcgtcTtgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactga
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| Protein seq | MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELMLAYLNFPSSSHPLIGHMCKNRDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSSLAYFAVNRCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAAKEFSHDLSKISRDNCFLEFSVKVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTTLEKVVGVDISRKGLTRAAKSLHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLFGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQDEVCQEGELHQPYELLWEWPNASLPSH |
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| Function | Small RNA 2'-O-methyltransferase [UniProtKB/Swiss-Prot:Q9C5Q8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0003950 | OsLiXu_07g0003950.03 | Chr07 | 3250817 | 3255978 | - | NAM | ||
| CDS seq | atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttatgctcgcatatctgaacttcccctcgtcgtctcatcctcttattggccacatgtgtaagaaccgggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgacatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctagcctagcctacttcgctgtcaataggtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgtgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaaggagttttctcatgacctttccaagatatctagagacaattgcttcttggagttctctgtaaaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaagagCcttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacagctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtgattgagcacgtagaggaggaccaagcaagtttatttggcgacgtcgtcTtgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactga
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| Protein seq | MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELMLAYLNFPSSSHPLIGHMCKNRDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSSLAYFAVNRCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAAKEFSHDLSKISRDNCFLEFSVKVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTTLEKVVGVDISRKGLTRAAKSLHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLFGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQDEVCQEGELHQPYELLWEWPNASLPSH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0003950 | OsLiXu_07g0003950.01 | Chr07 | 3250817 | 3255978 | - | NAM | ||
| CDS seq | atggacgtgctaaagaatgctgaaaatcagtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgtgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaaggagttttctcatgacctttccaagatatctagagacaattgcttcttggagttctctgtaaaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaagagCcttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacagctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtgattgagcacgtagaggaggaccaagcaagtttatttggcgacgtcgtcTtgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactga
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| Protein seq | MDVLKNAENQCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAAKEFSHDLSKISRDNCFLEFSVKVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTTLEKVVGVDISRKGLTRAAKSLHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLFGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQDEVCQEGELHQPYELLWEWPNASLPSH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0003950 | OsLiXu_07g0003950.04 | Chr07 | 3250817 | 3255978 | - | NAM | ||
| CDS seq | atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttatgctcgcatatctgaacttcccctcgtcgtctcatcctcttattggccacatgtgtaagaaccgggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgacatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctgtgtattctcgttctagttggaagggtctctctccacgagatcttctctgctcattttgtcgccttcacagactagcagagcctagcctacttcgctgtcaatag
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| Protein seq | MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELMLAYLNFPSSSHPLIGHMCKNRDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPSLLRCQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0003950 | OsLiXu_07g0003950.02 | Chr07 | 3250817 | 3255978 | - | NAM | ||
| CDS seq | atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttatgctcgcatatctgaacttcccctcgtcgtctcatcctcttattggccacatgtgtaagaaccgggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgacatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctgtgtattctcgttctagttggaagggtctctctccacgagatcttctctgctcattttgtcgccttcacagactagcagagcctagcctacttcgctgtcaatag
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| Protein seq | MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELMLAYLNFPSSSHPLIGHMCKNRDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPSLLRCQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 3252315 | 3253253 | - | OsLiXu_07g0003950.01,OsLiXu_07g0003950.02 | OsLiXu_07g0003950.02,OsLiXu_07g0003950.01,OsLiXu_07g0003950.04 | All |
| RI | Chr07 | 3253836 | 3254292 | - | OsLiXu_07g0003950.01 | OsLiXu_07g0003950.03,OsLiXu_07g0003950.02,OsLiXu_07g0003950.01,OsLiXu_07g0003950.04 | All |
| RI | Chr07 | 3252069 | 3252220 | - | OsLiXu_07g0003950.02,OsLiXu_07g0003950.04 | OsLiXu_07g0003950.03,OsLiXu_07g0003950.02,OsLiXu_07g0003950.01,OsLiXu_07g0003950.04 | All |
| RI | Chr07 | 3253072 | 3253253 | - | OsLiXu_07g0003950.04 | OsLiXu_07g0003950.03,OsLiXu_07g0003950.04 | All |
| A5 | Chr07 | 3254292 | 3254907 | - | OsLiXu_07g0003950.01 | OsLiXu_07g0003950.03,OsLiXu_07g0003950.02,OsLiXu_07g0003950.01,OsLiXu_07g0003950.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084411 | 0.152220 | 0.072966 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0164000 | RBH | 0.936613 | 0.494958 | 2.715897 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g06970 | RBH | 0.628038 | 0.327318 | 0.688861 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0164000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003960 | RBH | 0.437773 | 0.000000 | 1.874182 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0003940 | RBH | 0.081107 | 0.000000 | 1.191782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003830 | RBH | 0.420665 | 2.468560 | 4.274518 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003780 | RBH | 0.044374 | 0.055982 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0003870 | RBH | 2.492343 | 5.317345 | 12.383140 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0056200 | RBH | 3.6340485 | 6.2402255 | 3.835549 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004400 | RBH | 0.091350 | 0.152108 | 0.505130 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0060100 | RBH | 3.189172 | 5.694968 | 23.2272055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0003880 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0003880 | RBH | 1.239288 | 43.338421 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003920 | RBH | 1.527387 | 1.751660 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0038640 | RBH | 0.000000 | 0.0 | 0.422740 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0003860 | RBH | 0.0 | 0.876186 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004040 | RBH | 0.586982 | 2.249145 | 2.634899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0003830 | RBH | 0.637667 | 7.586926 | 6.181174 |
