Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_07g0003940 OGI:07009950 | 15/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr07:3320885-3326052
Gene Symbol WAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1
DNA seq

ctactgacgacaagttaatgccaactacagtactaatcagaatctccatctcagttacaagcatggtgaagagttaatagagttgtcgtgtctccctaccacaagaactcagtgagatggcaacgatgcatttggccattcccagagaagctcataaggttgatgcagctctccctcctggcaaacctcatcttgacccgacgccattcttctgaagacagcgatctgggaagcgaagcctggttcatcgcctgatccgccaacgccactgaactcgacgctgtagttgtgcttttctgcgagtccggtagcccagtgctggaactgggatcttgtccactcgaacttgtggtcatggtttcggaacttgcaaggaccagcgttttcttctggttcttcttccttgtttggcatagctgatctctggaggatagggttgtattcatagttgggtgttgaaacaatcagcaccgtagggcagaacgaactcaagacgacgtcgccacataaacttgcttggtcctcctctacgtgctcaatcacctgcaagtagctttggtcagtcgaatagcatgtccaactaaatctaacgtttgagagatcaaagagaaatccacatcagcatttgtaaggatggacttcccactgtactactatgaacaaaataatgaatccacatcagcatttctaaggatggacttcccattgtactactatacaaatgtgattaggctatgtgattcttaatccaatcaattaatcgtggtatccatgtactagaggcaattgagaagacagcagaaacagttcaggagtaactgacctcaagacaagtgccaatgtcaaatctgtataagcgagaatcaaaatccgttatagaaccatcatagagcacagccgttggaacacttgtctgcatcaacgatttcttgctcagcttctgatgaaggctctgcaaattcagagagatgaaaggagtcattgccaagcattggagagaacaaaagggatggtttaaagggtgaactaactatcaacagtcatcaaggctctgttacgtgcctttgctgctcgtgtgagacccttccgagaaatgtcaacaccgacaactttttcaagggttgttggatgctcaagcaatgaatcaagaaggctaccagatccacagccaaaatcaacctgaacaaatttacttcaatagtgataagctaatatgcttggcaaatatggaagtaggatgagaagaatatttaccaatgtggtagcatgcagctcattgatgtaccgaacagcgaattccactctttgtttagataaaggaggattaaacaaggctttttccattctatcttctaatggttcagttacctgcaatacctttacagagaactccaagaagcaattgtctgcaaggatggttaaaacttgagcatagtgcttcagccaaattcaagctggtaatgaaaattatcagactgaggtgttaagattggacctcacctctagatatcttggaaaggtcatgagaaaactcattagctgcagcaaggatcaaatccttaggaggcaattcagctatgaaacatgcgctttgattaactgacagctgactcacgcatgattcaatctgattcttaacagccccagtccctatctcaaactcaaactcattgttgctttctagcgtatatctgtttgttttgtccttcaccaccaaggaagcagtatagcttatgcaagtcaatgatccatgggatggaaaaacaccagaatctggaccatcaatgtgtgctaaaactgcattgttttcaagcttttgttttgaggtatccatagaaagcgatccaactgtactgcatgcacttgagtcatcacctcctctgttgccataaatagataagaacatggcaaattcatgcaaaaaattatctggacatattgtgaagccatcagtgctcttagaatgagagagcttcagtacatgcttgttcggttgcttgaaataactacagaaccaaatcaacaccttcaatgaagaattgtgaatggcatcagattccttgctccaagtatcagctgtcgaatactccaataaaagctcctgcttctttgaatatattttgacatcacatttgaacatatctgggttttccttgtcattctttccatcactagcacactgattttcagcattctttagcacgtccatctcctcggagcttacaggtgatcctaacactttacaagaggcacttaccctattgacagcgaagtagggctctgctagtctgtgaaggcgacaaaatgagcagagaagatctcgtggagagagacccttccaactagaacgagaatacacagatggaagctctgccaccagaattgaatccctggatatcttgtaattcccatctggtgatttgcccagaagaatcctgagttaccaaaaagcaagttattcagaagaattagaaactaagatgagaacagaaggtgtgcctaaacaatagagaaaatcaattcaaatgatggaagagtagtagtcgagtagatgacagtgtgaagaaaaatcagatcaagatctatctacaaccagatgattcttataaaaaaaatgaagtatgcatattgaattaaactaaagtcaaaatatatctcatacaagtgacataatcaacaaatcgatacctgtaatagttggataaggtaacatcttcagtatgaagctctgagtctctccttgtatatccaacattagccaaaattgcatctccataaattgtttgaccagaaatgaaggaagctcgcttatttattaggctctccatatagccatctccaagagaagaaaccacattgtgtgatatctcagaaacaaattgcacatttggagctgagaaatatagccttatctcagaagatgctttgccaacagttctgcagtgagacaattttaagattatcagcacaccaaaaataatgacaatggtcagaagagaaggctcggcacaatactgaccttgaaacaacagcgtgggaggaatcacttgcagagagcttagacactatatcacccatgtaatgttcattatgtgataaagtaagtcttattgtcttaggttcatcctccatcatacaaggaacaaaaatcccatctacttctatgggatccgttatgccagaccaatgctgaagtgccaaatcaacagcctcaggggaataaggcttctgactccaaatccagaagttgctatcactgacagagacaccaggggattttttggcagcattatagattaatgataaaaccaagagaggatcaaactccgctttggggtcaataagtttacacagtccaatgaccttcacatcacatgcagcaattgctgacataggaatcataccaaagcggtccccggttcttctgaatgtcacacacatgtggccaataagaggatgagatgacgaggggaagttctgaatagaagagtaggaaaaaaaaaagacagacatgttagaaaaggtcggttagaacaaattaattgtttttcagttacatctgatgctctgaataataatatgattatatagccgcatgcttcaactataatcctgtattcttgtgtacacaaaatgattcagacttcaatattggtatttggtgatcatgtgacatgtctatgtaaagaagaatgtgtaccaaagcaggttgaaactgcagaaacatagaaagcaaagccttaagggaaatgttttttgtagtaagctcgatggtccggtctctttaccacatagatacccataacctcttaattccagtaatacagagtctttcttaactccaattataagagttgcaatggttatgatcatgcaaccctacgacatacacagcccatcataaggatcctatatccctattacactcctcaattgccagcagagcatagcattccactcaaatatgtaacatcatgaatatgaaaacttccttttgctgtagccttctgttgtgtgcaccttaatccctgaactacaatgacacaacaccaagatcaagtggaaaatactaacctcatctgtaaaaaaaccagatatgcgagcaataagttcatcccatgcttcttcaggagtactgggagcatttgcagtgggctgaataccaagctacaacgaagacaataaaagaaatggtaatcaccataggtccacagcatgaacaacatttcacatagtaatgatatttcatatatcataggtacatagcttatccgatagagaaatacaaaggagctaggttactgtgcagcttgatcactaacgtcgatggcattggtttgtcagaacagaaaacagagggtactatcaaaagaaatggcaacaaagacaatgagcaacacaattaggtgctcactcaggaattgaataaccaaactaaggtgagatttgactatttgagacttgagagaactccaccttgcacttgtgacattcctcaattcctcataggtgagacacaattgctaactgaatcgtgcattgtgcatatcgccgtatctaatcacaaacttaaaggctacacgataaatctctatgtatatggaagatgattttgcaactacacatgtaaagcaaaaaaaaaaaggtgaagttgcatgccaccaccacaatgctcatcaataccttgtcgagggcaatctgcgcggcggcttgctcggcgtccttcttcctgacgaaggtgcccggggtgacgacggtgaggccggggatgtcgagcgagcagcggtagacgctcctggtctgctgcggcagcgcgaggccggggcagccgccgtcgacggcctcccgcacctcctccacgctgtagcacgccttggcgccgtacttctggtggatcaccgccttgggcgtcaccgtcggcgccgccggcatccctcgcttcgatcccccgccgcctctcagccgcaacggcatcaaacgcccaaaaaaaacaaacaaaaacaaacaaacaaatgcgattggtaacgaaggggattttcgcaatcgatcgacgcaggaactgaggcggaatcgggagggggtggtcgccgaattgggggaggcgctaaaccccccagaaaaatcggaagcgaggcgaggaggattcgaggagtcgggtgaagtggggt

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CDS seq

atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttattgctcgcatatctggtttttttacagatgagaacttcccctcgtcatctcatcctcttattggccacatgtgtgtgacattcagaagaaccggggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgatatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctgtgtattctcgttctagttggaagggtctctctccacgagatcttctctgctcattttgtcgccttcacagactagcagagccctacttcgctgtcaatagggtaagtgcctcttgtaaagtgttaggatcacctgtaagctccgaggagatggacgtgctaaagaatgctgaaaatcagtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgcgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaatgagttttctcatgacctttccaagatatctagagacaattgcttcttggagttctctgtaaaggtattgcaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaagagccttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacggctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtgattgagcacgtagaggaggaccaagcaagtttatgtggcgacgtcgtcttgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactga

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Protein seq

MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELIARISGFFTDENFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPYFAVNRVSASCKVLGSPVSSEEMDVLKNAENQCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKVLQVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTTLEKVVGVDISRKGLTRAAKSLHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLCGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQDEVCQEGELHQPYELLWEWPNASLPSH

Function Small RNA 2'-O-methyltransferase [UniProtKB/Swiss-Prot:Q9C5Q8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_07g0003940 OsKeNa_07g0003940.01 Chr07 3320885 3326052 - NAM
CDS seq

atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttattgctcgcatatctggtttttttacagatgagaacttcccctcgtcatctcatcctcttattggccacatgtgtgtgacattcagaagaaccggggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgatatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctgtgtattctcgttctagttggaagggtctctctccacgagatcttctctgctcattttgtcgccttcacagactagcagagccctacttcgctgtcaatagggtaagtgcctcttgtaaagtgttaggatcacctgtaagctccgaggagatggacgtgctaaagaatgctgaaaatcagtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgcgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaatgagttttctcatgacctttccaagatatctagagacaattgcttcttggagttctctgtaaaggtattgcaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaagagccttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacggctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtgattgagcacgtagaggaggaccaagcaagtttatgtggcgacgtcgtcttgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactga

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Protein seq

MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVREAVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQPTANAPSTPEEAWDELIARISGFFTDENFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSVYSRSSWKGLSPRDLLCSFCRLHRLAEPYFAVNRVSASCKVLGSPVSSEEMDVLKNAENQCASDGKNDKENPDMFKCDVKIYSKKQELLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSHGSLTCISYTASLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFIAELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKVLQVTEPLEDRMEKALFNPPLSKQRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTTLEKVVGVDISRKGLTRAAKSLHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLCGDVVLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQFQHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQDEVCQEGELHQPYELLWEWPNASLPSH

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.081107 0.000000 1.191782

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0164000 RBH 0.936613 0.494958 2.715897
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g06970 RBH 0.628038 0.327318 0.688861
Nipponbare | IRGSP 1.0 | RAP-db Os07g0164000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0003960 RBH 0.437773 0.000000 1.874182
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0003830 RBH 0.420665 2.468560 4.274518
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0003780 RBH 0.044374 0.055982 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0003870 RBH 2.492343 5.317345 12.383140
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0056200 RBH 3.6340485 6.2402255 3.835549
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0004400 RBH 0.091350 0.152108 0.505130
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0060100 RBH 3.189172 5.694968 23.2272055
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0003880 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0003880 RBH 1.239288 43.338421 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0003920 RBH 1.527387 1.751660 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0003950 RBH 0.084411 0.152220 0.072966
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0003860 RBH 0.0 0.876186 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G004040 RBH 0.586982 2.249145 2.634899
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0003830 SBH 0.637667 7.586926 6.181174
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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