Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0001880 | OGI:07004670 | 6/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:1394459-1395897 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgtggtcatcagcaagaagcccagcagcgtggctgttattagctgcaGttcttgcgctcgcggcggcgcCgtgcacggcgcagagctcgccgcaggacttcgtgagcccgcAcaacgcggcgAGggccaacgtcagcgtggcggcggcggcgtgGaaCGacacggtggcggcgtacgcgcagggctacgcggcgcagcggcagggcgactgcaagctggtgcactcggactccggcgggaggtacggcgagaacctcttctggggctccgccggcggcaactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacaaccacaccagcaacaGctgctcggcgccgGcggggagctcgtgcgggcactacacgcaggtggtgtggcgcaactcgacggcgatcggctgcgcccgcgtcgtctgcagcaacaacctcggcgtgttcatcacctgCaactactcgccgccgggcaactacattggccaatccccctactaacgactgtccacaacgcaggacgcagctgcacgcaggactatcgtatatactcctatgtaAttgggagtggattctaatccctcgAGgggatAtcccctcgtatacctttttcttccAaattcgatgcaaatagttgtgaaaaatctgaaaaaaattgacaatgtagagtaatatgctaccttctagtcgaccaaaattcatgtcaattcgatctacacatcgagaaacaaaaaagacaatttagatataaacagtacgctactattctacgctgaatttgtctttttttatatctcgacgtgtgagttgagtttggacttaagattttgtgacgttgtatatatgtgttgtatgaatgtttgtcaaatttttcCagaattttTcataaccatttagatgGTttttgagcaaacgagggaacatcccctcgagggattagaatagtttccctacgtaaAtgtaatccttcgttttattttacagtacttcacatgcatagtgtaccctctcgttcgtcacccgtgcatttagtatatatactacctacatccctctatgtcaaataaaaaagatcggggtagtacagtatatggttatgtatgtacatgtgccagtgagaaaagcatgccagatttgccttaatttgggggtttaActtgcacgtatagtgatttttttttctaaaagtaAtggaaagaaatccggactctatattTaaaagtgaacatacgctgatacgcAcAcaagtgcatatacactaaAtctcAaagttgagtttaaagaaAaaaaaaccgaaaaaaaaaAgaagactaagcttgaagcttttcCttcatgctttaaaAcagggaaaagcgggagctagcccgccCtcccaccgccatatatacaaccaccacaacagctccttcgtttcattataa
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| CDS seq | atggcgtggtcatcagcaagaagcccagcagcgtggctgttattagctgcaGttcttgcgctcgcggcggcgcCgtgcacggcgcagagctcgccgcaggacttcgtgagcccgcAcaacgcggcgAGggccaacgtcagcgtggcggcggcggcgtgGaaCGacacggtggcggcgtacgcgcagggctacgcggcgcagcggcagggcgactgcaagctggtgcactcggactccggcgggaggtacggcgagaacctcttctggggctccgccggcggcaactggacggcggcgagcgccgtgtcggcgtggggaaaagcgggagctagcccgccCtcccaccgccatatatacaaccaccacaacagctccttcgtttcattataa |
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| Protein seq | MAWSSARSPAAWLLLAAVLALAAAPCTAQSSPQDFVSPHNAARANVSVAAAAWNDTVAAYAQGYAAQRQGDCKLVHSDSGGRYGENLFWGSAGGNWTAASAVSAWGKAGASPPSHRHIYNHHNSSFVSL |
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| Function | Pathogenesis-related protein PRB1-2 [UniProtKB/Swiss-Prot:P35792] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0001880 | OsLiXu_07g0001880.01 | Chr07 | 1394459 | 1395897 | + | NAM | ||
| CDS seq | atggcgtggtcatcagcaagaagcccagcagcgtggctgttattagctgcaGttcttgcgctcgcggcggcgcCgtgcacggcgcagagctcgccgcaggacttcgtgagcccgcAcaacgcggcgAGggccaacgtcagcgtggcggcggcggcgtgGaaCGacacggtggcggcgtacgcgcagggctacgcggcgcagcggcagggcgactgcaagctggtgcactcggactccggcgggaggtacggcgagaacctcttctggggctccgccggcggcaactggacggcggcgagcgccgtgtcggcgtggggaaaagcgggagctagcccgccCtcccaccgccatatatacaaccaccacaacagctccttcgtttcattataa
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| Protein seq | MAWSSARSPAAWLLLAAVLALAAAPCTAQSSPQDFVSPHNAARANVSVAAAAWNDTVAAYAQGYAAQRQGDCKLVHSDSGGRYGENLFWGSAGGNWTAASAVSAWGKAGASPPSHRHIYNHHNSSFVSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0128800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03690 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0128800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001700 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001690 | SBH | 0.0 | 1.088405 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001740 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0025900 | SBH | 0 | 0.0425905 | 0.0201525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0022700 | SBH | 0.265995 | 8.0111045 | 0.276095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001750 | SBH | 0.000000 | 0.118062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001820 | SBH | 0.0 | 22.701403 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001800 | SBH | 0.0 | 39.938324 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0038190 | SBH | 0.0 | 0.0 | 2.571136 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001790 | SBH | 0.0 | 1.697424 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001830 | SBH | 0.711452 | 0.000000 | 0.191643 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001760 | SBH | 0.0 | 45.302692 | 5.740110 |
