Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLaMu_07g0001790		OGI:07004540 \| 16/16			LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)			Chr07:1410832-1416651		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		PR1A, OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, OsPR1, OsPR1a, PR1a, PR1
DNA seq		acaaccatactagctagtgatctctcgatctccatcatctcttcgtctaccaacaaagttataatatcaaattaaggtgtatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgcaacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgtatatacggtgtatgcatttacactttagctgtccttcgtggttacatgcatggtctgatggtcatgtacatatatagctggtttttgctggttaattaatttgtccttaattttgagtttatggggtttgtacgtactggttaatttatcaagccccgaatatggagattactccctctgtttctaaatatttggcgccgttgattttttttaaatatgtttgaccgttcatcttattcaaaaaattaaaataattattaattattttcctatcatttaatttattatcaaatatacttatatgtatacatatagttttacatatttcacaaatttttttaaataagatgaacggttaaacatttactaaaaagtcaacggtatcaaataattagaaacagaaggagtactatattagacatagtcaacattaattgtggacgctgagagagaaatatatatttggctcaaagaaaattttgtggaggaatacacatgcgggtcgatgttgcacgtatcgatagttccaagctgaaaacaattattgccagggtaatttactaacacatataaaactcagttaaagttagaaaagtttgatttaggacaaattaagctaaaataacatacaatggaacagagttagtactagtatttattcagcaaacggttaatgttaccgttccgacctacactctcatcctctttaagtaatttacgatgttaaaacatcaataattcgaagaaattatggttagacacacttaacctatctaaactctctgcgccaaaaggtaaaaggtgtgcatggcggagagagataacacgtgtaaattttggaataggattggtggaaattatttaattagtttcattaattttattagtactatgagattgttaggaccttttatctcacattgaatcaaaatcgcaacaatatctagtacagctcaaaaggtatttggaggaattgtcgaagtggaagctaagatacatacttctagaaagttccatgtgaagaagcagagccgacgaggacatagagcatatatagtaaaacgatgatttttaaaattcctgatcggtgggaagttatacttcgaggtattaatttctaatgtaaattttgatacacttaagtattttagttatctaaaaatatcaaaatttaaatcataaaatttagtagctctcaagtatcataaaatttcttcagtaaattaaagaagacgaagcatcaaggacgaagctatcatttttccaatgtgtcgttcaataatcctgcaagtgcagcagttgctgctttttgcaatgttgtcttttgggcttgcttaattgggcccagacttggagagtaattaacccagctagccacggtccagcccaatcgagtttccgatagagatgccttttgttaatttactggtgacgatcatttaagaaagaatattacagccccaacggcaatatttgcaaacaaaaataatttttaataaaacttttatatatgtgttattagtgatccaaaagcaaataaactacgataaaaaaaccttaaaatcaacttcaaatttaaagttgaaattttgaaattttagctgataagcgtaagtataagcgaaaagataagaccgttagagaacatctggtcttcgcaactatttggcatagttgaaaaacataaaatgagctaaatactatccttacagtatctgtatgtatatagagtaattttacagttattaagtaggtatcataaagtaccacattttatattataaatttgatatatcttgatagttataggtattgtaccaaattttgcactaaatttttaatatatcatggtacctcctgaataacgtaccgaataacgtaccgtaaaattgctcatctcagctcatgtatgtatgtacgtacgtacttacgtcatgcagagactgatcactaattaagtcgtacgtctttgggaaattacccggcatgatcgatggatcaatcatcaaggtgacttcatgtaatggtagtagtcacatctcggccggtcagcgtcgcgtagaatttatagatcaaaactacaccaaattgacaagtgtaacctcaaagattcgatcgcaacacacataagacaaagattgcttatctgtgaacgatgaattaattgactagcccatcaattatgttatcactacctgctagcttcggcttaattccacaacatcgagCcccctaggttactctaataagttaaattttaaattttcaagttaattttaagatattttcaacgtaattttttttatattagtttttagtcgtcaaaaacatatataaaaattttacctataaattattatttttatttctaataagccaaaataatttattagggaatatgagcaaccgatgagaccgattgtcaaacggtttagctatagatactacttcctctatttcacgaaatctatccatttttgctagaataattctccaatatgtcaattcacataaatgggtatacatattaatcatcgatatcatgttagttggtctaaaataaagagatcaattagagttgtatcagagcccaaacatattataaaaacgtggatttatatacttgttgttgtgactaatatattggcatactagattaggtttttctccccatacttcatatgatgaggatatcactagttcggatatagccatggctatattaatcaagcaaaggtgcatgttttttatgtgagatttacgtgttatatatttgaacaaacattactgtactataagttttatgtgttctcatttgtaaaggtacttgcttggatgaagaaaaggggagcgggcatatggagtgttcggatgatcaatgaacttgattgggtaccaaccaatatcattccccaagtatactccaatattactacgtcacttttggtccatacaaggcaagatatgaaattttacacgttttggttttgatacggacctcctgacaacatcaacttccaacggacttagccgttgatctagaaggaatccaggggctcttgagtacttgctgaaaagcttattgagtttacagatggttttggtcacacatcaaaattcctcctcagctgttgggcatatgcaaaacaagccacgtgcattatccagtccgagtctgatttgagccttgaactttgcaatttgtaattgtgtcgtgggctaaactcaaaggcctggcgccctagggcaaccctaggacgtctctaatcatatttattcagtttacagtcgggttttggttagattatttctgccatcgtagtttcaccactagttcggtttgtagaacccccaacctcgagtgcttaattattcgtctgcaatagagttgttatctaccttgttcttgcttgtgttattcgattcgtatgtagggattagccttctcagtgaggtcaatcgggtagcacacggttgataactagacaagacgtggtgctgtaattgcaaggttcggatcgtgttgatcagtaaccggattgtgtgtgtcatgttttcgccaaatcgagagttacctttacctatcggaagatcaggacctagttactcatcagttggtatcagagtgtcagattgcccgttaggtaatttatctacccataactagaaaattgccacacaaaaaattaaattgagagttatcaatacctttcggaagatcaggacctagttcctcatcagttggtatcagaggagaacaccggtctccgaccaatagaagtatggctattatccatcccgaaaaccttgaacctatataatatccatgtctccttttctcttgcactataatttcatttgcattctcatatcagccgatccatacattatcgaaatacaacctgtaagtagggatcctgaggtcggggtataaccatcggcatattccgattgggagatgtagatgcaggttttgcagatgaatgtgttagacttgatttcgtagaggcgtcgtatctaggtctttttctcattattttccaatgcatgcatcgatcaacaacttgcatggaggtgacgatcgaaacaaaacaacttgcagtgaggcgatagtggtagttgtagtttggtcggtcattcgatctcgctatagagctacgacgacgtattcaaccatatataacacatggcagttttattgatcacctttagttaatttttgtgagcatgtacgagtagccacgtaaagtatcgatatgaagtaaattaaacctcaatttccgaaatgtcacgttcgcgtgcatggaattatttgctcctcttaatttgtgaataaaataatttgacgagaagcgtacgtacattgcaaagtcatcgaactttgcactataaatacccagcttatacaaccatatatctcacaccagcaacaagctaatcatacatacatacaaatcaattccctttttaattagcaattagagagcttaattaattttgcatcgaaaatggcaacctccagcttgctagtagctgcagtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggactacgtggacgcgcacaacgcggcgaggtccgacgtcggggtcgggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcgcgctagagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcgtcgtgggtggcggagaagcagtggtacgaccacgacagcaacagctgctcggcgccggcgaatgcttcgtgcctccactacacgcaggtggtgtggagcaactcgacggcgatcggctgcgcccgcgtcgtctgcgacagcaacctcggcgtcttcatcacctgcaactactcgccgccgggcaacgtcgacggcgaatctccctactag More
CDS seq		atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtgcttgctagtagctgcagtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggactacgtggacgcgcacaacgcggcgaggtccgacgtcggggtcgggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcgcgctagagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcgtcgtgggtggcggagaagcagtggtacgaccacgacagcaacagctgctcggcgccggcgaatgcttcgtgcctccactacacgcaggtggtgtggagcaactcgacggcgatcggctgcgcccgcgtcgtctgcgacagcaacctcggcgtcttcatcacctgcaactactcgccgccgggcaacgtcgacggcgaatctccctactag More
Protein seq		MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGVGPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWVSEKQCLLVAAVLAAAAMAATAQNSAQDYVDAHNAARSDVGVGPVSWDDTVAAYAESYAAQRQGDCALEHSDSGGKYGENIFWGSAGGDWTAASAVSSWVAEKQWYDHDSNSCSAPANASCLHYTQVVWSNSTAIGCARVVCDSNLGVFITCNYSPPGNVDGESPY
Function		Pathogenesis-related protein PRMS [UniProtKB/Swiss-Prot:Q00008]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLaMu_07g0001790	OsLaMu_07g0001790.01	Chr07	1410832	1416651	+	NAM
CDS seq	atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtgcttgctagtagctgcagtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggactacgtggacgcgcacaacgcggcgaggtccgacgtcggggtcgggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcgcgctagagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcgtcgtgggtggcggagaagcagtggtacgaccacgacagcaacagctgctcggcgccggcgaatgcttcgtgcctccactacacgcaggtggtgtggagcaactcgacggcgatcggctgcgcccgcgtcgtctgcgacagcaacctcggcgtcttcatcacctgcaactactcgccgccgggcaacgtcgacggcgaatctccctactag More
Protein seq	MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGVGPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWVSEKQCLLVAAVLAAAAMAATAQNSAQDYVDAHNAARSDVGVGPVSWDDTVAAYAESYAAQRQGDCALEHSDSGGKYGENIFWGSAGGDWTAASAVSSWVAEKQWYDHDSNSCSAPANASCLHYTQVVWSNSTAIGCARVVCDSNLGVFITCNYSPPGNVDGESPY More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	1.697424	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0129300	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g03730	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0129300	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0001810	RBH	0.0	667.583435	2.697793
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0001820	RBH	0.0	0.000000	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0001700	RBH	0.0	0.000000	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0001690	RBH	0.0	1.088405	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0001750	RBH	0.0	108.239494	40.411301
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0026300	RBH	0.1929415	0.1135035	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0001820	RBH	0.0	0.467017	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0022800	RBH	2.2325445	2.6944765	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0001750	RBH	0.000000	0.118062	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0001820	RBH	0.0	22.701403	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0001800	RBH	0.0	39.938324	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0001870	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0001770	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G001830	RBH	0.711452	0.000000	0.191643
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0001760	RBH	0.0	45.302692	5.740110

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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