Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0027470 | OGI:06081190 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:30165535-30169834 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgatagcatcaatcagatctaattcatcgaggtctgaattgaatggtttgatttggacaggattgacttttcctcccttgttggacagacagatcgacgactgcacgaggtatccgtgatcgatctcttccacacatacgctactggttcttgcaactaatacattgcaaaagaacaatatcagtatgaatacacgcaacaataaagggtagtagtagcagcagctgctggtgctacctacctaaagaaacaaaattctaaaaatccattctagtgaagaatacaatacattactgattctgttcaattaaatcttgcatttaactaatgctatggcattaatttgcacatcatgttgacccgagaattccgactgatccattatgattgattgcctgaataattcttctgatggtctaactccatgcacatggaattcagtactctttatctctgtagctcaaaatcttaaacatgtcagattatcagactagtatctagctactccatttcccacgttacctagctagtccagaattgatttttttttcattatgtttttgtcaggatccatacatgtgtcatgctcatacgctgtagggtcaaggaaaacataacagaaaaaaaagcttctgcagacgtatacatcacccatacactgagctccggaagtaaacgcctcgggccaagaagggagggtacccAcccacctctcccttctcctaatttcaccattatcttgaagctccacttgctaccaatcaagaacatacacaactcgaatacgacgctaatgattgttttaagtcataattgatgtgaagatagagtaagtgcattccaagtacctgccactagcagaagaagtgccttgtagaaacgctcgaatctttgagcagatgttcctttcgcgcatggtcgacgccttttccctgttcaatgaaagagatcctaaaaaaaagttcaaattgtgaggagacatttgcaatgagaaaattgagctgtttcttagaattcttcaaaaactagcacttccattggacagagcttgttgacaatcaagcgctccgttctgacttctgaagttttaccgagcagtacgctaatattcagcaaaggaaaacaaatctctctgacatgaagttgatgagagcataggttatcacagaagatatgcataaaaatatatggctactataaattataagagcaggatgcagtattcagtagcaacttccaaagtttgatgacgacctggacaaggataacaactaccgttttgcacaggaaagttggacttttgcgtagaattttagctgcctaagcaagacgtcaaacatgtgaactggggtacaaaaatatttgtttttttccctcttattgacagtacggtagtggcaaacgtgtaaaaaacccgatctggatgtgtctagcatctaacctttggtcatcttcttcaaaggagcacaaggaggaaagaccaacaatacagaaacagaaagcagCTTcttccttcccaccatagcaggctattgttgaaaaaaccatttggttctttagccaatcagaatccaaatcaaacattcttgcagcaggcgagtttcatgagagaaccatgcagctgcccaatttgccatgcagcagcagcaccaccaccaccaccaccaagttatctgtggctttctttcggcttcttgttatcctcctgctctcgtttgcctctccgaccagctcctgcacagagcaagaggagagctccctcatcggctttctagagggtctcttgccaggccacaacggcagcctcagcacgtcatgggtgaagggcatagactgctgcaaatgggaaggcatcaactgcagcagcgatggcacggtcacagatgtctcgttggcttccaagggcctccaaGggcgcatctcgccatctctcggcaatcttactgggctgttgcacctcaacctgtctcacaacttactcaatggctacctaccaatggaattgttgttctccagaagtatcatcgttcttgacgtcagcttcaaccgcctggatggttctctgccagagttggagtcccctagtggtggttctcctctccaggtactgaatatctcgagcaattcatttacagggcagttctcatcgaaacaatgggaagtgatgaagaatattgtcgctcttaatgtaagcaacaacagctttacaggacagataccaccttctatatgcatcaactccccatcatttgctatccttgacctttgttacaaccaattcagtggcagtatttcctcagggctcggaaattgctccaagctgagagagttcaaggctggatacaacaactttagtggagctctccctgaagaactcttcagtgctacctcattggagcacctaTCtcttcctaataatgatttacaaggagttcttgatggttcccacatagtaaaactcgtcaagctgacagtccttgatctcggatcgactgggctcagtggcaacatcccagattctattggccaactaagcacattggaggagctccggttggacaacaacaacatgtctggtgagctgccatcagccctaggtaactgcacaaatctgagatatctcagcctcagaaacaataaatttgtgggagatcttagcaaagtcaattttacctggttgaatttgagaatcgcagatttctcaattaataacttcactggtacagttccagaaagcatattctcatgcagcaatctaattgcgttgcggctggctttcaacaagtttcatggccagttgtcaccaagaatgggtactctcaagtccctgtccttcttttcaataagtgataaccatttcacaaatatcacaaatgcacttcagatactcaggagctgcaagaaccttacgtcactgcttattggaaccaatttcaagggtgaaaccataccacaagatgaaacagttgatggttttgagaatcttcgggtactgaccatagactcttgtggagcaatggggcaaatccctccttggatatcaaagctcaaaaaactggaagtgttggatttatcaaacaatatgctcatcggagaaataccattttggattagagatatgcctgttcttttctatttagacataacaaacaacagtcttacaggggatatcccagttgcgttgatgaacttgccgatgctacaatcagggaagaatgctgcccagttggacccaaattttcttgaattgcctgtttattggacaccatcacgtcaataccgcttgctcaatgcttttcctaatgcattgaatctaggtaataatagtttcacaggagtgattccccctgagattggtcagttgaaaatgcttgatggcttcaatgtcagctttaacaggttatctggagaaataccacagcagatatgcaacctcacaaacctgcaattgctagatttatcaagcaatcagctcacaggtgaactaccggccgcactgactgatctgcacttcctttctaaattcaatgtttctaacaatgaactagaagggccagttccaactggaagacagtttgatacatttctcaattctagctatagtgggaatccaaagctatgtggccctatgctcagcaacctgtgtgattcagtaccaacacatgcatcctccatgaaacggcgcaacaagaaggccattattgcacttgcattaggtgtgttctttggagggattgccatccttttcttgctgggacgttttcttatatccatcagaagaacaagctctgtccaccaaaacaagagcagcaacaatggggacatagaagcagcttcattgagttctgtttcagagcacttgcacgacatgataaaaggaaccattttggtgatggtacctcaaggcaagggaggatcaaataatctcaaattcaaggatatcttgaaggccactaataactttgaccagcagaacattatcggatgtggaggtaatggtctagtctacaaggctgagctacccaatggatccaagcttgcaatcaagaagctcaacggtgaaatgtgtctgatggagagagaatttaccgcagaggtagaagcactctctatggcacaacatgacaatcttgtgccactatggggttactgcatccaaggaaactcaaggctcctcatatattcttacatggagaacggcagtctagatgagtggcttcacaacagagacaatggcaggccacttctcgactggccaacaaggctcaagattgcacaaggagcaagccggggcctttca
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| CDS seq | atgcatatagaaggtggtatctgtcctgtaaagctgttgttgcttacattaagagcgacaatattcttcatcacttcccattgtttcgatgagaactgccctgtaaatgaattgctcgagatattcagtacctggagaggagaaccaccactaggggactccaactctggcagagaaccatccaggcggttgaagctgacgtcaagaacgatgatacttctggagaacaacaattccattggtaggttgaggtgcaacagcccagtaagattgccgagagatggcgagatgcgccCttggaggcccttggaagccaacgagacatctgtgaccgtgccatcgctgctgcagttgatgccttcccatttgcagcagtctatgcccttcacccatgacgtgctgaggctgccgttgtggcctggcaagagaccctctagaaagccgatgagggagctctcctcttgctctgtgcaggagctggtcggagaggcaaacgagagcaggaggataacaagaagccgaaagaaagccacagataacttggtggtggtggtggtggtgctgctgctgcatggcaaattgggcagctgcatggaagAAGctgctttctgtttctgtattgttggtctttcctccttgtgctcctttgaagaagatgaccaaagggaaaaggcgtcgaccatgcgcgaaaggaacatctgctcaaagattcgagcgtttctacaaggcacttcttctgctagtggcagttgcaagaaccagtag
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| Protein seq | MHIEGGICPVKLLLLTLRATIFFITSHCFDENCPVNELLEIFSTWRGEPPLGDSNSGREPSRRLKLTSRTMILLENNNSIGRLRCNSPVRLPRDGEMRPWRPLEANETSVTVPSLLQLMPSHLQQSMPFTHDVLRLPLWPGKRPSRKPMRELSSCSVQELVGEANESRRITRSRKKATDNLVVVVVVLLLHGKLGSCMEEAAFCFCIVGLSSLCSFEEDDQREKASTMRERNICSKIRAFLQGTSSASGSCKNQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0027470 | OsLiXu_06g0027470.02 | Chr06 | 30165535 | 30167769 | - | NAM | ||
| CDS seq | atgcatatagaaggtggtatctgtcctgtaaagctgttgttgcttacattaagagcgacaatattcttcatcacttcccattgtttcgatgagaactgccctgtaaatgaattgctcgagatattcagtacctggagaggagaaccaccactaggggactccaactctggcagagaaccatccaggcggttgaagctgacgtcaagaacgatgatacttctggagaacaacaattccattggtaggttgaggtgcaacagcccagtaagattgccgagagatggcgagatgcgccCttggaggcccttggaagccaacgagacatctgtgaccgtgccatcgctgctgcagttgatgccttcccatttgcagcagtctatgcccttcacccatgacgtgctgaggctgccgttgtggcctggcaagagaccctctagaaagccgatgagggagctctcctcttgctctgtgcaggagctggtcggagaggcaaacgagagcaggaggataacaagaagccgaaagaaagccacagataacttggtggtggtggtggtggtgctgctgctgcatggcaaattgggcagctgcatggaagAAGctgctttctgtttctgtattgttggtctttcctccttgtgctcctttgaagaagatgaccaaagggaaaaggcgtcgaccatgcgcgaaaggaacatctgctcaaagattcgagcgtttctacaaggcacttcttctgctagtggcagttgcaagaaccagtag
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| Protein seq | MHIEGGICPVKLLLLTLRATIFFITSHCFDENCPVNELLEIFSTWRGEPPLGDSNSGREPSRRLKLTSRTMILLENNNSIGRLRCNSPVRLPRDGEMRPWRPLEANETSVTVPSLLQLMPSHLQQSMPFTHDVLRLPLWPGKRPSRKPMRELSSCSVQELVGEANESRRITRSRKKATDNLVVVVVVLLLHGKLGSCMEEAAFCFCIVGLSSLCSFEEDDQREKASTMRERNICSKIRAFLQGTSSASGSCKNQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0027470 | OsLiXu_06g0027470.01 | Chr06 | 30165535 | 30169834 | - | NAM | ||
| CDS seq | atgctttctggaactgtaccagtgaagttattaattgagaaatctgcgattctcaaattcaaccagttacctagggctgatggcagctcaccagacatgttgttgttgtccaaccggagctcctccaatgtgcttagttggccaatagaatctgggatgttgccactgagcccagtcgatccgagatcaaggactgtcagcttgacgagttttactatgtgggaaccatcaagaactccttgtaaatcattattaggaagaGAtaggtgctccaatgaggtagcactgaagagttcttcagggagagctccactaaagttgttgtatccagccttgaactctctcagcttggagcaatttccgagccctgaggaaatactgccactgaattggttgtaa
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| Protein seq | MLSGTVPVKLLIEKSAILKFNQLPRADGSSPDMLLLSNRSSSNVLSWPIESGMLPLSPVDPRSRTVSLTSFTMWEPSRTPCKSLLGRDRCSNEVALKSSSGRAPLKLLYPALNSLSLEQFPSPEEILPLNWL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 30166466 | 30166976 | - | OsLiXu_06g0027470.01 | OsLiXu_06g0027470.01,OsLiXu_06g0027470.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.226733 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027220 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027030 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026770 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027260 | RBH | 0.000000 | 2.216305 | 0.733700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0454000 | RBH | 0 | 0.0414895 | 0.2574085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026660 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0436200 | RBH | 0 | 0 | 0.4032525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027140 | RBH | 0.000000 | 0.172339 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027220 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026820 | RBH | 0.000000 | 2.059239 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004231 | RBH | 0.659599 | 0.284526 | 0.061105 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027080 | RBH | 0.000000 | 5.898120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026990 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027050 | RBH | 0.000000 | 7.911076 | 0.000000 |
