Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsAzu_06g0027220		OGI:06081190 \| 15/16			Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)			Chr06:29031095-29036632		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		TTGATAGCATCAATCAGATCTAATTCATCGAGGTCTGAATTGAATGGTTTGATTTGGACAGGATTGACTTTTCCTCCCTTGTTGGACAGACAGATCGACGACTGCACGAGGTATCCGTGATCGATCTCTTCCACACATACGCTACTGGTTCTTGCAACTAATACATTGCAAAAGAACAATATCAGTATGAATACACGCAACAATAAAGGGTAGTAGTAGCAGCAGCTGCTGGTGCTACCTACCTAAAGAAACAAAATTCTAAAAATCCATTCTAGTGAAGAATACAATACATTACTGATTCTGTTCAATTAAATCTTGCGTTTAACTAATGCTATGGCATTAATTTGCACATCATGTTGACCCGAGAATTCCGACTGATCCATTATGATTGATTGCCTGAATAGTTCTTCTGATGGTCTAACTCCATGCACATGGAATTCAGTACTCTTTATCTCTGTAGCTCAAAATCTTAAACATGTCAGATTATCAGACTAGTATCTAGCTACTCCATTTCCCACGTTACCTAGCTAGTCCAGAATTGATTTTTTTTTCATTATGTTTTTGTCAGGATCCATACATGTGTCATGCTCATACGCCGTAGGGTCAAGGAAAACATAACAGAAAAAAAAGCTTCTGCAGACGTATACATCACCCATACACTGAGCTCCGGAAGTAAACGCCTCGGGCCAAGAAGGGAGGGTACCCACCCACCTCTCCCTTCTCCTAATTTCACCATTATCTTGAAGCTCCACTTGCTACCAATCAAGAACATACACAACTCGAATACGACGCTAATGATTGTTTTAAGTCATAATTGATGTGAAGATAGAGTAAGTGCATTCCAAGTACCTGCCACTAGCAGAAGAAGTGCCTTGTAGAAACGCTCGAATCTTTGAGCAGATGTTCCTTTCGCGCATGGTCGACGCCTTTTCCCTGTTCAATGAAAGAGATCCTAAAAAAAAGTTCAAATTGTGAGGAGACATTTGCAATGAGAAAATTGAGCTGTTTCTTAGAATTCTTCAAAAACTAGAACTTCCATTGGACAGAGCTTGTTGACTATCAAGCGCTCCGTTCTGACTTCTGAAGTTTTACCGAGCAGTACGCTAATATTCAGCAAAGGAAAACAAATCTCTCTGACATGAAGTTGATGAGAGCATAGGTTATCACAGAAGATATGCATAAAAATATATGGCTACTATAAATTATAAGAGCAGGATGCAGTATTCAGTAGCAACTTCCAAAGTTTGATGACGACCTGGACAAGGATAACAACTACCGTTTTGCACAGGAAAGTTGGACTTTTGCGTAGAATTTTAGCTGCCTAAGCAAGACGTCAAACATGTGAACTGGGGTACAAAAATATTTGTTTTTTTCCCTCTTATTGACAGTACGGTAGTGGCAAACGTGTAAAAAACCCGATCTGGATGTGTCTATAGCATCAAACCTTTGGTCATCTTCTTCAAAGGAGCACAAGGAGGAAAGACCAACAATACAGAAACAGAAAGCAGCTTCTTCCTTCCCACCATAGCAGGCTATTGTTGAAAAAACCATTTGGTTCTTTAGCCAATCAGAATCCAAATAAAACATTCTTGCAGCAGGCGAGTTTCATGAGAGAACCATGCAGCTGCCCAATTTGCCATGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACCAAGTTATCTGTGGCTTTCTTTCGGCTTCTTGTTATCCTCCTGCTCTCGTTTGCCTCTCCGACCAGCTCCTGCACAGAGCAAGAGGAGAGCTCCCTCATCGGCTTTCTAGAGGGTCTCTTGCCAGGCCACAACGGCAGCCTCAGCACGTCATGGGTGAAGGGCATAGACTGCTGCAAATGGGAAGGCATCAACTGCAGCAGCGATGGCACGGTCACAGATGTCTCGTTGGCTTCCAAGGGCCTCCAAGGGCGCATCTCGCCATCTCTCGGCAATCTTACTGGGCTGTTGCACCTCAACCTGTCTCACAACTTACTCAATGGCTACCTACCAATGGAATTGTTGTTCTCCAGAAGTATCATCGTTCTTGACGTCAGCTTCAACCGCCTGGATGGTTCTCTGCCAGAGTTGGAGTCCCCTAGTGGTGGTTCTCCTCTCCAGGTACTGAATATCTCGAGCAATTCATTTACAGGGCAGTTCTCATCGAAACAATGGGAAGTGATGAAGAATATTGTCGCTCTTAATGTAAGCAACAACAGCTTTACAGGACAGATACCACCTTCTATATGCATCAACTCCCCATCATTTGCTATCCTTGACCTTTGTTACAACCAATTCAGTGGCAGTATTTCCTCAGGGCTCGGAAATTGCTCCAAGATGAGAGAGTTCAAGGCTGGATACAACAACTTTAGTGGAGCTCTCCCTGAAGAACTCTTCAGTGCTACCTCATTGGAGCACCTATCTCTTCCTAATAATGATTTACAAGGAGTTCTTGATGGTTCCCACATAGTAAAACTCGTCAAGCTGACAGTCCTTGATCTCGGATCGACTGGGCTCAGTGGCAACATCCCAGATTCTATTGGCCAACTAAGCACATTGGAGGAGCTCCGGTTGGACAACAACAACATGTCTGGTGAGCTGCCATCAGCCCTAGGTAACTGCACAAATCTGAGATATCTCAGCCTCAGAAACAATAAATTTGTGGGAGATCTTAGCAAAGTCAATTTTACCTGGTTGAATTTGAGAATCGCAGATTTCTCAATTAATAACTTCACTGGTACAGTTCCAGAAAGCATATTCTCATGCAGCAATCTAATTGCGTTGCGGCTGGCTTTCAACAAGTTTCATGGCCAGTTGTCACCAAGAATGGGTACTCTCAAGTCCCTGTCCTTCTTTTCAATAAGTGATAACCATTTCACAAATATCACAAATGCACTTCAGATACTCAGGAGCTGCAAGAACCTTACGTCACTGCTTATTGGAACCAATTTCAAGGGTGAAACCATACCACAAGATGAAACAGTTGATGGTTTTGAGAATCTTCGGGTACTGACCATAGACTCTTGTGGAGCAATGGGGCAAATCCCTCCTTGGATATCAAAGCTCAAAAAACTGGAAGTGTTGGATTTATCAAACAATATGCTCATCGGAGAAATACCATTTTGGATTAGAGATATGCCTGTTCTTTTCTATTTAGACATAACAAACAACAGTCTTACAGGGGATATCCCAGTTGCGTTGATGAACTTGCCGATGCTACAATCAGGGAAGAATGCTGCCCAGTTGGACCCAAATTTTCTTGAATTGCCTGTTTATTGGACACCATCACGTCAATACCGCTTGCTCAATGCTTTTCCTAACGCATTGAATCTAGGTAACAATAGTTTCACAGGAGTGATTCCCCCTGAGATTGGTCAGTTGAAAATGCTTGATGGCTTCAATGTCAGCTTTAACAGGTTATCTGGAGAAATACCACAGCAGATATGCAACCTCACAAACCTGCAATTGCTAGATTTATCAAGCAATCAGCTCACAGGTGAACTACCGGCCGCACTGACTAATCTGCACTTCCTTTCTAAATTCAATGTTTCTAACAATGAACTAGAAGGGCCAGTTCCAACTGGAAGACAGTTTGATACATTTCTCAATTCTAGCTATAGTGGGAATCCAAAGCTATGTGGCCCTATGCTCAGCAACCTGTGTGATTCAGTACCAACACATGCATCCTCCATGAAACAGCGCAACAAGAAGGCCATTATTGCACTTGCATTAGGTGTGTTCTTTGGAGGGATTGCCATCCTTTTCTTGCTGGGACGTTTTCTTATATCCATCAGAAGAACAAGCTCTGTCCACCAAAACAAGAGCAGCAACAATGGGGACATAGAAGCAGCTTCATTGAGTTCTGTTTCAGAGCACTTGCACGACATGATAAAAGGAACCATTTTGGTGATGGTACCTCAAGGCAAGGGAGGATCAAATAATCTCAAATTCAAGGATATCTTGAAGGCCACTAATAACTTTGACCAGCAGAACATTATCGGATGTGGAGGTAATGGTCTAGTCTACAAGGCTGAGCTACCCAATGGATCCAAGCTTGCAATCAAGAAGCTCAACGGTGAAATGTGTCTGATGGAGAGAGAATTTACCGCAGAGGTAGAAGCACTCTCTATGGCACAACATGACAATCTTGTGCCACTATGGGGTTACTGCATCCAAGGAAACTCAAGGCTCCTCATATATTCTTACATGGAGAACGGCAGTCTAGATGACTGGCTTCACAACAGAGACAATGGCAGGCCACTTCTCGACTGGCCAACAAGGCTCAAGATTGCACAAGGAGCAAGCCGGGGCCTTTCATATATCCATAATATCTGCAAGCCTCACATTGTTCACCGTGACATCAAATCCAGCAATATCCTTCTCGACAGAGAATTCAGAGCTTGTGTTGCGGATTTTGGCCTTGCCAGATTGATCCTTCCCTATGACACACATGTTACAACTGAATTAATTGGCACTCTGGGATATATTCCACCTGAGTACAGCCAGGCATGGGTGGCTACACTAAGAGGCGATATATACAGTTTTGGAGTGGTGCTGCTTGAGCTGCTCACAGGGAAGAGGCCAGTCCAGGTCTTGTCCAAGTCGAAGGAACTTGTCCAATGGACCCGGGAGATGAGATCTCATGGAAAGGATACTGAGGTGTTGGATCCAGCACTGAGAGGAAGAGGCCATGAAGAGCAAATGCTGAAGGTGCTTGATGTGGCTTGCAAGTGTATCAGCCATAATCCTTGCAAGAGGCCAACCATCCAAGAAGTGGTCTCCTGCCTGGACAATGTTGATGCAGACCTGCAGGTGCAGATGTAGTTAAAGGAGAACAGATCCATAGACCTGGAGATGCAGAGATGATTTTGTACTTACAGACTAGGTGTGTAACTTCAGTAGAAAGAAGATTTGCTAACAAATATTACAGTTTGATTGTACATCTGTGTAAAGGAATGGCTCGCAGTTATGAGCTTCTGTATTTAGTTTCCCTCTTTTTTGTGGAAATATTTCTCATCTAAAAAACTTAGCATTGAACTTAGGATCCCTGGTTCAATTCATCTACATTTCTTTTCTTGAGCTCTTCAGAAAAGTTGTTCAACGTCAACACTACATAATGTTGAACATACGCAGAGCAGATTTCAGATTTCTCTGAAGAAAAACTTGCAAGATATGAAAGCCAATCATCGCACACATATATTAGGGCAGCCGGAAACGAAGGAACAATTGCTGGAAAAGTATACTAGTAGCAGAAATCAAATGCGCGCGTAGGTGTCAAGCGATTGCTATACTGACCCTCAGATGCGGCTTGCTCCCGCCGCCGGTGGAGGCCTTCGCTCGAATCTGCGGCGAGCGGAGGAGACGGCAGCGCGGCGGCGGCTCCGATGGGAAGGAAGGGGACACCGGCCAGCCGGCCCATTTGGAGTTGCCGCGGCGGCGAATGGGCCGGAATTCTGGACTTCCTTTTTTTGGAACTCCGGCCTTTTGGCGTCTGGAAATCTAACCGAGACGTCGCTCCGGCCCGTCCCGAATCCCCGGCCCAT More
CDS seq		ATGCATATAGAAGGTGGTATCTGTCCTGTAAAGCTGTTGTTGCTTACATTAAGAGCGACAATATTCTTCATCACTTCCCATTGTTTCGATGAGAACTGCCCTGTAAATGAATTGCTCGAGATATTCAGTACCTGGAGAGGAGAACCACCACTAGGGGACTCCAACTCTGGCAGAGAACCATCCAGGCGGTTGAAGCTGACGTCAAGAACGATGATACTTCTGGAGAACAACAATTCCATTGGTAGGTTGAGGTGCAACAGCCCAGTAAGATTGCCGAGAGATGGCGAGATGCGCCCTTGGAGGCCCTTGGAAGCCAACGAGACATCTGTGACCGTGCCATCGCTGCTGCAGTTGATGCCTTCCCATTTGCAGCAGTCTATGCCCTTCACCCATGACGTGCTGAGGCTGCCGTTGTGGCCTGGCAAGAGACCCTCTAGAAAGCCGATGAGGGAGCTCTCCTCTTGCTCTGTGCAGGAGCTGGTCGGAGAGGCAAACGAGAGCAGGAGGATAACAAGAAGCCGAAAGAAAGCCACAGATAACTTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCATGGCAAATTGGGCAGCTGCATGGAAGAAGCTGCTTTCTGTTTCTGTATTGTTGGTCTTTCCTCCTTGTGCTCCTTTGAAGAAGATGACCAAAGGGAAAAGGCGTCGACCATGCGCGAAAGGAACATCTGCTCAAAGATTCGAGCGTTTCTACAAGGCACTTCTTCTGCTAGTGGCAGTTGCAAGAACCAGTAG More
Protein seq		MHIEGGICPVKLLLLTLRATIFFITSHCFDENCPVNELLEIFSTWRGEPPLGDSNSGREPSRRLKLTSRTMILLENNNSIGRLRCNSPVRLPRDGEMRPWRPLEANETSVTVPSLLQLMPSHLQQSMPFTHDVLRLPLWPGKRPSRKPMRELSSCSVQELVGEANESRRITRSRKKATDNLVVVVVVLLLLLLHGKLGSCMEEAAFCFCIVGLSSLCSFEEDDQREKASTMRERNICSKIRAFLQGTSSASGSCKNQ
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsAzu_06g0027220	OsAzu_06g0027220.03	Chr06	29031095	29033341	-	NAM
CDS seq	ATGCATATAGAAGGTGGTATCTGTCCTGTAAAGCTGTTGTTGCTTACATTAAGAGCGACAATATTCTTCATCACTTCCCATTGTTTCGATGAGAACTGCCCTGTAAATGAATTGCTCGAGATATTCAGTACCTGGAGAGGAGAACCACCACTAGGGGACTCCAACTCTGGCAGAGAACCATCCAGGCGGTTGAAGCTGACGTCAAGAACGATGATACTTCTGGAGAACAACAATTCCATTGGTAGGTTGAGGTGCAACAGCCCAGTAAGATTGCCGAGAGATGGCGAGATGCGCCCTTGGAGGCCCTTGGAAGCCAACGAGACATCTGTGACCGTGCCATCGCTGCTGCAGTTGATGCCTTCCCATTTGCAGCAGTCTATGCCCTTCACCCATGACGTGCTGAGGCTGCCGTTGTGGCCTGGCAAGAGACCCTCTAGAAAGCCGATGAGGGAGCTCTCCTCTTGCTCTGTGCAGGAGCTGGTCGGAGAGGCAAACGAGAGCAGGAGGATAACAAGAAGCCGAAAGAAAGCCACAGATAACTTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCATGGCAAATTGGGCAGCTGCATGGAAGAAGCTGCTTTCTGTTTCTGTATTGTTGGTCTTTCCTCCTTGTGCTCCTTTGAAGAAGATGACCAAAGGGAAAAGGCGTCGACCATGCGCGAAAGGAACATCTGCTCAAAGATTCGAGCGTTTCTACAAGGCACTTCTTCTGCTAGTGGCAGTTGCAAGAACCAGTAG More
Protein seq	MHIEGGICPVKLLLLTLRATIFFITSHCFDENCPVNELLEIFSTWRGEPPLGDSNSGREPSRRLKLTSRTMILLENNNSIGRLRCNSPVRLPRDGEMRPWRPLEANETSVTVPSLLQLMPSHLQQSMPFTHDVLRLPLWPGKRPSRKPMRELSSCSVQELVGEANESRRITRSRKKATDNLVVVVVVLLLLLLHGKLGSCMEEAAFCFCIVGLSSLCSFEEDDQREKASTMRERNICSKIRAFLQGTSSASGSCKNQ More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsAzu_06g0027220	OsAzu_06g0027220.01	Chr06	29034464	29036632	-	NAM
CDS seq	ATGGGCCGGGGATTCGGGACGGGCCGGAGCGACGTCTCGGCCGGAGTTCCAAAAAAAGGAAGTCCAGAATTCCGGCCCATTCGCCGCCGCGGCAACTCCAAATGGGCCGGCTGGCCGGTGTCCCCTTCCTTCCCATCGGAGCCGCCGCCGCGCTGCCGTCTCCTCCGCTCGCCGCAGATTCGAGCGAAGGCCTCCACCGGCGGCGGGAGCAAGCCGCATCTGAGGGTCTGCATCAACATTGTCCAGGCAGGAGACCACTTCTTGGATGGTTGGCCTCTTGCAAGGATTATGGCTGATACACTTGCAAGCCACATCAAGCACCTTCAGCATTTGCTCTTCATGGCCTCTTCCTCTCAGTGCTGGATCCAACACCTCAGTATCCTTTCCATGAGATCTCATCTCCCGGGTCCATTGGACAAGTTCCTTCGACTTGGACAAGACCTGGACTGGCCTCTTCCCTGTGAGCAGCTCAAGCAGCACCACTCCAAAACTGATCAATCTGGCAAGGCCAAAATCCGCAACACAAGCTCTGAATTCTCTGTCGAGAAGGATATTGCTGGATTTGATGTCACGGTGAACAATATTAGTCAGTGCGGCCGGTTTGTGAGGTTGCATATCTGCTGTGGTATTTCTCCAGATAACCTGTTAAAGCTGACATTGAAGCCATCAAGCATTTTCAACTGA More
Protein seq	MGRGFGTGRSDVSAGVPKKGSPEFRPIRRRGNSKWAGWPVSPSFPSEPPPRCRLLRSPQIRAKASTGGGSKPHLRVCINIVQAGDHFLDGWPLARIMADTLASHIKHLQHLLFMASSSQCWIQHLSILSMRSHLPGPLDKFLRLGQDLDWPLPCEQLKQHHSKTDQSGKAKIRNTSSEFSVEKDIAGFDVTVNNISQCGRFVRLHICCGISPDNLLKLTLKPSSIFN More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsAzu_06g0027220	OsAzu_06g0027220.02	Chr06	29031095	29036472	-	NAM
CDS seq	ATGCTTTCTGGAACTGTACCAGTGAAGTTATTAATTGAGAAATCTGCGATTCTCAAATTCAACCAGTTACCTAGGGCTGATGGCAGCTCACCAGACATGTTGTTGTTGTCCAACCGGAGCTCCTCCAATGTGCTTAGTTGGCCAATAGAATCTGGGATGTTGCCACTGAGCCCAGTCGATCCGAGATCAAGGACTGTCAGCTTGACGAGTTTTACTATGTGGGAACCATCAAGAACTCCTTGTAAATCATTATTAGGAAGAGATAGGTGCTCCAATGAGGTAGCACTGAAGAGTTCTTCAGGGAGAGCTCCACTAAAGTTGTTGTATCCAGCCTTGAACTCTCTCATCTTGGAGCAATTTCCGAGCCCTGAGGAAATACTGCCACTGAATTGGTTGTAA More
Protein seq	MLSGTVPVKLLIEKSAILKFNQLPRADGSSPDMLLLSNRSSSNVLSWPIESGMLPLSPVDPRSRTVSLTSFTMWEPSRTPCKSLLGRDRCSNEVALKSSSGRAPLKLLYPALNSLILEQFPSPEEILPLNWL

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr06	29032027	29032539	-	OsAzu_06g0027220.02	OsAzu_06g0027220.03,OsAzu_06g0027220.02	All

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.000000	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0027330	RBH	0.000000	0.000000	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0027030	RBH	0.000000	0.000000	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0027210	RBH	0.000000	0.000000	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0026770	RBH	0.000000	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0027260	RBH	0.000000	2.216305	0.733700
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0454000	RBH	0	0.0414895	0.2574085
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0026660	RBH	0.000000	0.000000	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0436200	RBH	0	0	0.4032525
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0027140	RBH	0.000000	0.172339	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0027220	RBH	0.000000	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0026820	RBH	0.000000	2.059239	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0027470	RBH	0.000000	0.000000	0.226733
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0027080	RBH	0.000000	5.898120	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G026990	RBH	0.000000	0.000000	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0027050	RBH	0.000000	7.911076	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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