Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0028180 | OGI:05078530 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:29872995-29875274 | ||||||||
| Gene Symbol | WRKY8, OsWRKY8 | ||||||||||
| DNA seq | aacaagacccaaattcctcatgatcttcagtttggaattaaagacagtgtttatatagctagctaggcacttagccctgcaactcaaacaaacatgttttgtagaccgaccaaaaaaacgaggacacaaaacatgcatcccacacttcacttggtcatcagtaacgtaaccatatatatatagccgcgcacaaatttatctcgagcagcatgcattctgtaaaccgtaaataagaaagatctaatatcaatagccgtggtgactgcctgtcacggaaggaagaggtcttgctgcgcggtgtggagatgaagaggaggcatcgtcggccgggcggcggcggcgtgtatgctcggcacgaagcctaactgctgctgctgctgctgctggttcatcgtcattcgcacccgagcggcgagggcttcgtcgaagccaaggagcggcggcggcggcgcgccgaactggtaggcgccggcggcgccgggcatgacaccacgcgcgctcacatgcatgagcccctgctgcctgtgcatgtggtagctcacggggctcgggtgcgtgtgctgcccttcgtacgtggtgatcaccatggacgggtcctgctccgacctctccacccgcttcttcaccccgcaccgcggcgccgtgcaccggtagtagctcctgcattcgttggaatagagaagagtcaagtgacgacacagaagaagacgcaggtattaggtggagaactgtccatcgtagatatatacttctgacatatggatccatcgagatattctgagaaaaaaaactcagaccaatgccaatgtgtgcttagcttgttgctaatgctgtggtagctgcttctgtcaaatatatgcatgccaattatgatggagaataatgcatatgcaagtgaaaatttggctagctgaccttgggtaggagctgttcttgacggctttctggccgtacttgcgccaccggtagccgtcctcgaggtggtcgacctcgctcttggtcatgaacgccacacgtggctcacgctccttcttcgccccttttttattcttcattttgttcgtcctgcacgcaccagatcgatcgatcgagatcgacatatgctgtctcagttgagatattggcctcttgcgcatatatatcagccggtgcatgattgctactgtctcgtgaatcatttgttaatcatcgatcgctagtctcgtcagttaatcattaattcatatatatattgttaattattgtgaaaagatcggtttcaacaaattattgtgaaaagaagggagggaacaaaccctaaattccgacgttaacacttcacacgcggtatatacacacacggaatcttcgtattcagacccgtaaagttaattaatttgtaccgatcgatgaattaaaaactacgtaggtagatgcatgtacacaccgaagccaaattaattaattcatccaagatctatctagccatgcacgtgtgataaatcgatcagacataaattcagcatggatctagctacaaaacaagatcaaattaatactgaacttacttgcaactctgaacggccgatccctcatcgtcaatctcctcctcctcgtcgtcctccggccgacgacctttcttgcaccggcgcagatcgtcccctccagccgcctcgctggacgacgacagcaccgacgagttcggcgtggccggcgccgccgccacgccgccggcctgactgggatgatccaccatcgtttcgtgcttcacggcagcatcgccgcccaacggggacgacgcgtacacggggtcctgcaggaagccttgcagataatccgtgatgctggagtagggcgtgatgagcccaacaccatcatcgtctccagcgccggcgccggcgccggctcctcctccggacgccgccgatctgccaaagaagaagctagccaccacgtcgtcgtcgtggtcgaaggggaggaaaccggcggcggcaggatgatcctcgtagaggccatgacctcctcctccaggtccagacatggagtactgtgaagctggggaagaggcgttgaacggagcaagcaagaagggctagcttgactcttgggaggaaatgaaatgagaggagttttgcaaaggcgaaaattctgactggcctttaatttggagtaaactagaaatgagattggtgcgcgtgcgttgtgtgttaaaatacttctgccaccactatacagttgatgtttatatgcttgtcttattccgtgcttatttcttaattaacctgatcgatcgatttaatc
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| CDS seq | atgtctggacctggaggaggaggtcatggcctctacgaggatcatcctgccgccgccggtttcctccccttcgaccacgacgacgacgtggtggctagcttcttctttggcagatcggcggcgtccggaggaggagccggcgccggcgccggcgctggagacgatgatggtgttgggctcatcacgccctactccagcatcacggattatctgcaaggcttcctgcaggaccccgtgtacgcgtcgtccccgttgggcggcgatgctgccgtgaagcacgaaacgatggtggatcatcccagtcaggccggcggcgtggcggcggcgccggccacgccgaactcgtcggtgctgtcgtcgtccagcgaggcggctggaggggacgatctgcgccggtgcaagaaaggtcgtcggccggaggacgacgaggaggaggagattgacgatgagggatcggccgttcagagttgcaagacgaacaaaatgaagaataaaaaaggggcgaagaaggagcgtgagccacgtgtggcgttcatgaccaagagcgaggtcgaccacctcgaggacggctaccggtggcgcaagtacggccagaaagccgtcaagaacagctcctacccaaggtcggagcaggacccgtccatggtgatcaccacgtacgaagggcagcacacgcacccgagccccgtgagctaccacatgcacaggcagcaggggctcatgcatgtgagcgcgcgtggtgtcatgcccggcgccgccggcgcctaccagttcggcgcgccgccgccgccgctccttggcttcgacgaagccctcgccgctcgggtgcgaatgacgatgaaccagcagcagcagcagcagcagttaggcttcgtgccgagcatacacgccgccgccgcccggccgacgatgcctcctcttcatctccacaccgcgcagcaagacctcttccttccgtga
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| Protein seq | MSGPGGGGHGLYEDHPAAAGFLPFDHDDDVVASFFFGRSAASGGGAGAGAGAGDDDGVGLITPYSSITDYLQGFLQDPVYASSPLGGDAAVKHETMVDHPSQAGGVAAAPATPNSSVLSSSSEAAGGDDLRRCKKGRRPEDDEEEEIDDEGSAVQSCKTNKMKNKKGAKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSSYPRSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARGVMPGAAGAYQFGAPPPPLLGFDEALAARVRMTMNQQQQQQQLGFVPSIHAAAARPTMPPLHLHTAQQDLFLP |
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| Function | WRKY transcription factor 28 [UniProtKB/Swiss-Prot:Q8VWJ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0028180 | OsLiXu_05g0028180.01 | Chr05 | 29872995 | 29875274 | - | NAM | ||
| CDS seq | atgtctggacctggaggaggaggtcatggcctctacgaggatcatcctgccgccgccggtttcctccccttcgaccacgacgacgacgtggtggctagcttcttctttggcagatcggcggcgtccggaggaggagccggcgccggcgccggcgctggagacgatgatggtgttgggctcatcacgccctactccagcatcacggattatctgcaaggcttcctgcaggaccccgtgtacgcgtcgtccccgttgggcggcgatgctgccgtgaagcacgaaacgatggtggatcatcccagtcaggccggcggcgtggcggcggcgccggccacgccgaactcgtcggtgctgtcgtcgtccagcgaggcggctggaggggacgatctgcgccggtgcaagaaaggtcgtcggccggaggacgacgaggaggaggagattgacgatgagggatcggccgttcagagttgcaagacgaacaaaatgaagaataaaaaaggggcgaagaaggagcgtgagccacgtgtggcgttcatgaccaagagcgaggtcgaccacctcgaggacggctaccggtggcgcaagtacggccagaaagccgtcaagaacagctcctacccaaggtcggagcaggacccgtccatggtgatcaccacgtacgaagggcagcacacgcacccgagccccgtgagctaccacatgcacaggcagcaggggctcatgcatgtgagcgcgcgtggtgtcatgcccggcgccgccggcgcctaccagttcggcgcgccgccgccgccgctccttggcttcgacgaagccctcgccgctcgggtgcgaatgacgatgaaccagcagcagcagcagcagcagttaggcttcgtgccgagcatacacgccgccgccgcccggccgacgatgcctcctcttcatctccacaccgcgcagcaagacctcttccttccgtga
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| Protein seq | MSGPGGGGHGLYEDHPAAAGFLPFDHDDDVVASFFFGRSAASGGGAGAGAGAGDDDGVGLITPYSSITDYLQGFLQDPVYASSPLGGDAAVKHETMVDHPSQAGGVAAAPATPNSSVLSSSSEAAGGDDLRRCKKGRRPEDDEEEEIDDEGSAVQSCKTNKMKNKKGAKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSSYPRSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARGVMPGAAGAYQFGAPPPPLLGFDEALAARVRMTMNQQQQQQQLGFVPSIHAAAARPTMPPLHLHTAQQDLFLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0583000 | RBH | 1.441872 | 1.707518 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50610 | RBH | 0.975069 | 1.263790 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0583000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028480 | RBH | 0.129614 | 0.0 | 0.435583 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028260 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028270 | RBH | 0.000000 | 0.0 | 0.454738 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028220 | RBH | 0.718982 | 2.565468 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0453200 | RBH | 0.184569 | 1.8145345 | 0.5957815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027930 | RBH | 0.0 | 0.161150 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466700 | RBH | 1.8814855 | 2.6853255 | 0.030197 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028050 | RBH | 0.0 | 0.080700 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027930 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028170 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025140 | RBH | 0.000000 | 0.153325 | 0.025362 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027710 | RBH | 0.157245 | 0.597333 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028230 | RBH | 0.0 | 0.000000 | 0.0 |
