Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os05g50610		OGI:05078530 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr05:29009136-29013172		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		WRKY8, OsWRKY8
DNA seq		TTTTCTTTTCCAAAAAGGATTTAATTAAATCCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAGATCCGTTTGACTCCGTTCAACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTATTAGGGCTTCATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTCCGGAGCCCGAAGACCCGCAGTGCGAGGATTTCGAGGATCAAGCTCCAGATCTCGAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAAATTTAATTATGTTGCTTGCAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTGTCCCGTCTGCAAGGCAGATTGGCGGATCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTGCCCTTGTAACCACCCAGTTGCGCCTCGGAAATCATGCAATCTGTGCGAGTACCGAAGGGCGCCTTCAAATTTAAAATCTGAGCAACTTCTTGGGTAAAACTTGAGTTTTACAAAAGACTTGGAAAACCCGACACCTAGGTCGGTGCTTGTGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTCGCACTTAAGAACCGATTCCTTGGAATTTCATCTAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACCCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGTCGAGAGACATGTGGATTCGCTGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTATCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTACCCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTATTGTGGAAAGGGGTTCGATGTTTGAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTAGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGATGCCAACCTTGAATCAAGTCTAAAGACCGATACATTACACATACTCCGACCGGACGAGACGCACTGTCTCAACCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAACTAAAATCAATTGCAAAAACAACGGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCTTGGCTTGCTGAGTACTCCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCCCAGTCGCTGAAGAAGACGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAGGAGCAAGCCGGCTACGATGAGTTTTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCCGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACATCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCTGTCTTCCTGTGATACCAGCACTGTGTCCTGGGACTGGTATTGATTAACAGGTTAAATTGGAGCGTCACAGACTAGTTCCGGTCGGTACTAGTTCGGGGCGTGACACATCAGAATTCAAATCAATAACAAGACCCAAATTCCTCATGATCTACAGTTTGGAATTAAAGACAGTGTTTATATAGCTAGCTAGGCACTTAGCAATGCAACTCAAACAAACATGTTTTGTAGACCAACCAAAAAAACGAGGACACAAAACATGCATCCCACACTTCACTTGGTCATCGGTAACGTAACCATATATATATAGCCGCGCACAAATTTATCTCGAGCAGCATGCATTCTGTAAACCGTAAATAAGAAAGATCTAATATCAATAGCCGTGGTGACTGCCTGTCACGGAAGGAAGAGGTCTTGCTGCGCGGTGTAGAGATGAAGAGGAGGCATCGTCGGCCGGGCGGCGGCGGCGTGTATGCTCGGCACGAAGCCTAACTGCTGCTGCTGCTGCTGCTGGTTCATCGTCATTCGCACCCGAGCGGCGAGGGCTTCGTCGAAGCCAAGGAGCGGCGGCGGCGGCGCGCCGAACTGGTAGGCGCCGGCGGCGCCGGGCATGACACCGCGCGCGCTCACATGCATGAGCCCCTGCTGCCTGTGCATGTGGTAGCTCACGGGGCTCGGGTGCGTGTGCTGCCCTTCGTATGTGGTGATCACCATGGACGGGTCCTGCTCCGACCTCTCCACCCGCTTCTTCACCCCGCACCGCGGCGCCGTGCACCGGTAGTAGCTCCTGCATTCGTTGGAATAGAGAAGAGTCAAGTGACGACACAGAAGAAGACGCAGGTATTAGGTGAAGAACTGTCCATCGTAGATATATACTTCTAACATATGGATCCATCGAGATATTCTGAGAAAAAAAAAACTCAGACCAATGCCAATGTGTGCTTAGCTTGTTGCTAATGCTGTGGTAGCTGCTTCTGTCAAATATATGCATGCCAATTATGATGGAGAATAATGCATATGCAAGTGAAAATTTGGCTAGCTGACCTTGGGTAGGAGCTGTTCTTGACGGCTTTCTGGCCGTACTTGCGCCACCGGTAGCCGTCCTCGAGGTGGTCGACCTCGCTCTTGGTCATGAACGCCACACGTGGCTCACGCTCCTTCTTCGCCCCTTTTTTATTCTTCATTTTGTTCGTCCTGCACGCACCAGATCGATCGATCGAGATCGACATATGCTGTCTCAGTTGAGATATTGGCCTCTTGCGCATATATATCAGCCGGTGCATGATTGCTACTGTCTCGTGAATCATTTGTTAATCATCGATCGCTAGTCTCGTCAGTTAATCATTAATTCATATATATATATATTGTTAATTATTGTGAAAAGATCGGTTTCAACAAATTATTGTGAAAAGAAGGGAGGGAACAAACCCTAAATTCCGACGTTAACACTTCACACGCGGTATATACACACACGGAATCTTCGTATTCAGACCCGTAAAGTTAATTAATTTGTACCGATCGATGAATTAAAAACTAGGTAGGTAGATGCATGTACACACCGAAGCCAAATTAATTAATTCATCCAAGATCTATCTAGCCATGCACGTGTGATAAATCGATCAGACATAAATTCAGCATGGATCTAGCTACAAAACAAGATCAAATTAATACTGAACTTACTTGCAACTCTGAACGGCCGATCCCTCATCGTCAATCTCCTCCTCCTCCTCGTCCTCCGGCCGACGACCTTTCTTGCACCGGCGCAGATCGTCCCCTCCAGCCGCCTCGCTGGACGACGACAGCACCGACGAGTTCGGCGTGGCCGGCGCCGCCGCCACGCCGCCGGCCTGACTGGGATGATCCACCACCGTTTCGTGCTTCACGGCAGCATCGCCGCCCAACGGGGACGACGCGTACACGGGGTCCTGCAGGAAGCCTTGCAGATAATCCGTGATGCTGGAGTAGGGCGTGATGAGCCCAACACCATCATCGTCTCCAGCGCCGGCGCCGGCGCCGGCTCCTCCTCCGGACGCCGCCGATCTGCCAAAGAAGAAGCTGGCCACCACGTCGTCGTCGTGGTCGAAGGGGAGGAAGCCGGCGGCTGCAGGATGATCCTCGTAGAGGCCATGACCTCCTCCTCCAGGTCCAGACATGGAGTACTGTGAAGCTGGGGAAGAGGCGTTGAACGGAGCAAGCAAGAAGGGCTAGCTTGACTCTTGGGAGGAAATGAAATGAGAGGAGTTTTGCAAAGGCGAAAATTCTGACTGGTCTTTAATTTGGAGTAAACTAGAAATGAGATTGGTGCGCGTGCGTTGTGTGTTAAAAT More
CDS seq		ATGTCTGGACCTGGAGGAGGAGGTCATGGCCTCTACGAGGATCATCCTGCAGCCGCCGGCTTCCTCCCCTTCGACCACGACGACGACGTGGTGGCCAGCTTCTTCTTTGGCAGATCGGCGGCGTCCGGAGGAGGAGCCGGCGCCGGCGCCGGCGCTGGAGACGATGATGGTGTTGGGCTCATCACGCCCTACTCCAGCATCACGGATTATCTGCAAGGCTTCCTGCAGGACCCCGTGTACGCGTCGTCCCCGTTGGGCGGCGATGCTGCCGTGAAGCACGAAACGGTGGTGGATCATCCCAGTCAGGCCGGCGGCGTGGCGGCGGCGCCGGCCACGCCGAACTCGTCGGTGCTGTCGTCGTCCAGCGAGGCGGCTGGAGGGGACGATCTGCGCCGGTGCAAGAAAGGTCGTCGGCCGGAGGACGAGGAGGAGGAGGAGATTGACGATGAGGGATCGGCCGTTCAGAGTTGCAAGACGAACAAAATGAAGAATAAAAAAGGGGCGAAGAAGGAGCGTGAGCCACGTGTGGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGACGGCTACCGGTGGCGCAAGTACGGCCAGAAAGCCGTCAAGAACAGCTCCTACCCAAGCTACTACCGGTGCACGGCGCCGCGGTGCGGGGTGAAGAAGCGGGTGGAGAGGTCGGAGCAGGACCCGTCCATGGTGATCACCACATACGAAGGGCAGCACACGCACCCGAGCCCCGTGAGCTACCACATGCACAGGCAGCAGGGGCTCATGCATGTGAGCGCGCGCGGTGTCATGCCCGGCGCCGCCGGCGCCTACCAGTTCGGCGCGCCGCCGCCGCCGCTCCTTGGCTTCGACGAAGCCCTCGCCGCTCGGTCCCAGGACACAGTGCTGGTATCACAGGAAGACAGATTATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGATGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCGGGACTTGGACCAAACAACACAGGCGCGACTTGGGAACTAGGCCGAAACCCTAAAACTCATCGTAGCCGGCTTGCTCCTGGAAGAACTCCTCATCAGCAGGATCCGCTTCGTCTTCTTCAGCGACTGGGGGGGGATTATTTATATAGAGCAAGGAGGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCCAAAGCCGATACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGAATCGGTTCTTAAGTGCGAGAGCGGGAAAACCGTACACCCGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCTGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGGAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATGAAGCCCTAA More
Protein seq		MSGPGGGGHGLYEDHPAAAGFLPFDHDDDVVASFFFGRSAASGGGAGAGAGAGDDDGVGLITPYSSITDYLQGFLQDPVYASSPLGGDAAVKHETVVDHPSQAGGVAAAPATPNSSVLSSSSEAAGGDDLRRCKKGRRPEDEEEEEIDDEGSAVQSCKTNKMKNKKGAKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSSYPSYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARGVMPGAAGAYQFGAPPPPLLGFDEALAARSQDTVLVSQEDRLSQQQRSLYYRVDVQSCWAADRSRAHNCITKGKRKPGLGPNNTGATWELGRNPKTHRSRLAPGRTPHQQDPLRLLQRLGGDYLYRARRGVHFTHTTLLTRITQPVGISHVGRPPSFHDKAFPKPIQVYHMPTRGVPDQQQESVLKCESGKTVHPAQDVQRWLALLEIWSLILEILALRVFGLRNYTRNGTTQQTAKMKP
Function		WRKY transcription factor 28 [UniProtKB/Swiss-Prot:Q8VWJ2]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g50610	LOC_Os05g50610.1	Chr05	29009136	29013100	-	MSU_osa1r7
CDS seq	ATGTCTGGACCTGGAGGAGGAGGTCATGGCCTCTACGAGGATCATCCTGCAGCCGCCGGCTTCCTCCCCTTCGACCACGACGACGACGTGGTGGCCAGCTTCTTCTTTGGCAGATCGGCGGCGTCCGGAGGAGGAGCCGGCGCCGGCGCCGGCGCTGGAGACGATGATGGTGTTGGGCTCATCACGCCCTACTCCAGCATCACGGATTATCTGCAAGGCTTCCTGCAGGACCCCGTGTACGCGTCGTCCCCGTTGGGCGGCGATGCTGCCGTGAAGCACGAAACGGTGGTGGATCATCCCAGTCAGGCCGGCGGCGTGGCGGCGGCGCCGGCCACGCCGAACTCGTCGGTGCTGTCGTCGTCCAGCGAGGCGGCTGGAGGGGACGATCTGCGCCGGTGCAAGAAAGGTCGTCGGCCGGAGGACGAGGAGGAGGAGGAGATTGACGATGAGGGATCGGCCGTTCAGAGTTGCAAGACGAACAAAATGAAGAATAAAAAAGGGGCGAAGAAGGAGCGTGAGCCACGTGTGGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGACGGCTACCGGTGGCGCAAGTACGGCCAGAAAGCCGTCAAGAACAGCTCCTACCCAAGCTACTACCGGTGCACGGCGCCGCGGTGCGGGGTGAAGAAGCGGGTGGAGAGGTCGGAGCAGGACCCGTCCATGGTGATCACCACATACGAAGGGCAGCACACGCACCCGAGCCCCGTGAGCTACCACATGCACAGGCAGCAGGGGCTCATGCATGTGAGCGCGCGCGGTGTCATGCCCGGCGCCGCCGGCGCCTACCAGTTCGGCGCGCCGCCGCCGCCGCTCCTTGGCTTCGACGAAGCCCTCGCCGCTCGGTCCCAGGACACAGTGCTGGTATCACAGGAAGACAGATTATCACAGCAACAGAGGTCTCTTTATTATAGAGTAGATGTACAGTCATGTTGGGCTGCGGACAGATCCCGAGCTCACAACTGCATTACAAAAGGGAAACGGAAGCCGGGACTTGGACCAAACAACACAGGCGCGACTTGGGAACTAGGCCGAAACCCTAAAACTCATCGTAGCCGGCTTGCTCCTGGAAGAACTCCTCATCAGCAGGATCCGCTTCGTCTTCTTCAGCGACTGGGGGGGGATTATTTATATAGAGCAAGGAGGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGGGGATCAGCCACGTCGGGAGACCTCCAAGCTTTCATGACAAGGCATTTCCAAAGCCGATACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGGAATCGGTTCTTAAGTGCGAGAGCGGGAAAACCGTACACCCGGCTCAAGATGTTCAAAGGTGGCTTGCCTTGCTCGAGATCTGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGGAACTACACGCGAAACGGGACAACTCAACAAACGGCGAAAATGAAGCCCTAA More
Protein seq	MSGPGGGGHGLYEDHPAAAGFLPFDHDDDVVASFFFGRSAASGGGAGAGAGAGDDDGVGLITPYSSITDYLQGFLQDPVYASSPLGGDAAVKHETVVDHPSQAGGVAAAPATPNSSVLSSSSEAAGGDDLRRCKKGRRPEDEEEEEIDDEGSAVQSCKTNKMKNKKGAKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSSYPSYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARGVMPGAAGAYQFGAPPPPLLGFDEALAARSQDTVLVSQEDRLSQQQRSLYYRVDVQSCWAADRSRAHNCITKGKRKPGLGPNNTGATWELGRNPKTHRSRLAPGRTPHQQDPLRLLQRLGGDYLYRARRGVHFTHTTLLTRITQPVGISHVGRPPSFHDKAFPKPIQVYHMPTRGVPDQQQESVLKCESGKTVHPAQDVQRWLALLEIWSLILEILALRVFGLRNYTRNGTTQQTAKMKP More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g50610	LOC_Os05g50610.2	Chr05	29010970	29013172	-	MSU_osa1r7
CDS seq	ATGTCTGGACCTGGAGGAGGAGGTCATGGCCTCTACGAGGATCATCCTGCAGCCGCCGGCTTCCTCCCCTTCGACCACGACGACGACGTGGTGGCCAGCTTCTTCTTTGGCAGATCGGCGGCGTCCGGAGGAGGAGCCGGCGCCGGCGCCGGCGCTGGAGACGATGATGGTGTTGGGCTCATCACGCCCTACTCCAGCATCACGGATTATCTGCAAGGCTTCCTGCAGGACCCCGTGTACGCGTCGTCCCCGTTGGGCGGCGATGCTGCCGTGAAGCACGAAACGGTGGTGGATCATCCCAGTCAGGCCGGCGGCGTGGCGGCGGCGCCGGCCACGCCGAACTCGTCGGTGCTGTCGTCGTCCAGCGAGGCGGCTGGAGGGGACGATCTGCGCCGGTGCAAGAAAGGTCGTCGGCCGGAGGACGAGGAGGAGGAGGAGATTGACGATGAGGGATCGGCCGTTCAGAGTTGCAAGACGAACAAAATGAAGAATAAAAAAGGGGCGAAGAAGGAGCGTGAGCCACGTGTGGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGACGGCTACCGGTGGCGCAAGTACGGCCAGAAAGCCGTCAAGAACAGCTCCTACCCAAGGAGCTACTACCGGTGCACGGCGCCGCGGTGCGGGGTGAAGAAGCGGGTGGAGAGGTCGGAGCAGGACCCGTCCATGGTGATCACCACATACGAAGGGCAGCACACGCACCCGAGCCCCGTGAGCTACCACATGCACAGGCAGCAGGGGCTCATGCATGTGAGCGCGCGCGGTGTCATGCCCGGCGCCGCCGGCGCCTACCAGTTCGGCGCGCCGCCGCCGCCGCTCCTTGGCTTCGACGAAGCCCTCGCCGCTCGGGTGCGAATGACGATGAACCAGCAGCAGCAGCAGCAGCAGTTAGGCTTCGTGCCGAGCATACACGCCGCCGCCGCCCGGCCGACGATGCCTCCTCTTCATCTCTACACCGCGCAGCAAGACCTCTTCCTTCCGTGA More
Protein seq	MSGPGGGGHGLYEDHPAAAGFLPFDHDDDVVASFFFGRSAASGGGAGAGAGAGDDDGVGLITPYSSITDYLQGFLQDPVYASSPLGGDAAVKHETVVDHPSQAGGVAAAPATPNSSVLSSSSEAAGGDDLRRCKKGRRPEDEEEEEIDDEGSAVQSCKTNKMKNKKGAKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARGVMPGAAGAYQFGAPPPPLLGFDEALAARVRMTMNQQQQQQQLGFVPSIHAAAARPTMPPLHLYTAQQDLFLP More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.975069	1.263790	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0583000	RBH	1.441872	1.707518	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g43650	RBH	0.798361	0.648366	0.170839
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0583000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0028480	RBH	0.129614	0.0	0.435583
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0028260	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0028270	RBH	0.000000	0.0	0.454738
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0028330	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0028220	RBH	0.718982	2.565468	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0453200	RBH	0.184569	1.8145345	0.5957815
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0027930	RBH	0.0	0.161150	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0466700	RBH	1.8814855	2.6853255	0.030197
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0028050	RBH	0.0	0.080700	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0027930	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0028170	RBH	0.000000	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0028180	RBH	0.000000	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0028230	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G027710	RBH	0.157245	0.597333	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0028230	RBH	0.0	0.000000	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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