Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0024980 | OGI:05072550 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:27715611-27717214 | ||||||||
| Gene Symbol | FEN1, OsFEN1, OsFEN-1a, FEN-1, OsFEN-1, OsFbox270, Os_F0454 | ||||||||||
| DNA seq | ttattctaggaccaattcaacttggtccatcgaacagcaaaccccctccatgatctgctccttcacggcgagcttctcctcatcgctccaagtacatttctggctcaccatctcccattcacctgggcctctatcctcgacgtgtccatgcttgatcagcacaacacggcgcaacgccatggatgcttcctccatgacgtacctcacaaactgaacctgcctctctttcttgctctggaaaccaatgaccacaagctcctccagattgtcacaatgctgtgttcttgacggctcattctcccacactatctccaatctccgacgatccgccgccgggtcgtcgtcgtcttggcgatagtgttgggagaagtggacgtggaggcgctcaagcgacggcgccgccgcctcgacgacggcgcggatccacgtcgcgtcccagcgcggcggcacgtcggcgaccagcagcctcctcaggctgggcatctccaggaaagggctctccgggacgacccacatctgaggccccgtgagacgcagcgtgagatccgtcacgttaatggcggccctgcagaggtagccgagcgcggacagcgcggcgtcgcgcttgaacctctcctgcaatggctgcagtccgggggatccccttccatctggccgacgcggaacgcgacggtggcgcgcgcgaggcgcggcgcggcgtcggcgtcggggcggtacagctccacgctgttctggacaacgacgagcgtctcgaggctggggagtccgtggaggaagcgtacgctcatgtcgccgccgccgccgacgacgagctcccggaggtccggcaatggcgcgtcgatcacgaccttggagtagcggcatcggcaggagacgaggtggagggctcggagcgacgggcagctcgccacggcgcgctcgtagacggccgcccgcgtcgtgcggggcaagccgcgcaggaccagcgtggtgagcgcgtcgaagcctcggagatccggaggccggcatctggtgagctcgagcgtccttagccgggagccgtgggggtcgtcgctgatgcggccgtcggggaacctgtaggccgggtgatccagctgcgccgacgacgacgacgtcaggagaacggcggcgacgtcgaggtgctcgacgccccacgcgtcgacggccgtggtgatcaggcggttgatgtggttcgagctgttggtgtcgatgaactccaccgcgagcctgtggacgctccggcgcggcgtcgacggcgagagctccttcatgcaggcggccatggcgcgcatggcgcggcgctcgtaccgtctgatgacggcgtcgtacttcttgccgtagtcgtacacccagaacgacctcttggcctcgtcgcgccggcgaagctctaggtagtagtcgcgcggcaggatgtcggcgaccctcagatcgaggctgggcagctcgcgcgcgaggccggcccagcgcttgcccagcgcggcggcgccgagcgcggcgcgggagttgacgcggcgcaagatttcgcggagcacatcgtccgggagatcgctgatattgcggtggtactcgtccgggctccgttcggtaccctccttgttcatcat
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| CDS seq | atgatgaacaaggagggtaccgaacggagcccggacgagtaccaccgcaatatcagcgatctcccggacgatgtgctccgcgaaatcttgcgccgcgtcaactcccgcgccgcgctcggcgccgccgcgctgggcaagcgctgggccggcctcgcgcgcgagctgcccagcctcgatctgagggtcgccgacatcctgccgcgcgactactacctagagcttcgccggcgcgacgaggccaagaggtcgttctgggtgtacgactacggcaagaagtacgacgccgtcatcagacggtacgagcgccgcgccatgcgcgccatggccgcctgcatgaaggagctctcgccgtcgacgccgcgccggagcgtccacaggctcgcggtggagttcatcgacaccaacagctcgaaccacatcaaccgcctgatcaccacggccgtcgacgcgtggggcgtcgagcacctcgacgtcgccgccgttctcctgacgtcgtcgtcgtcggcgcagctggatcacccggcctacaggttccccgacggccgcatcagcgacgacccccacggctcccggctaaggacgctcgagctcaccagatgccggcctccggatctccgaggcttcgacgcgctcaccacgctggtcctgcgcggcttgccccgcacgacgcgggcggccgtctacgagcgcgccgtggcgagctgcccgtcgctccgagccctccacctcgtctcctgccgatgccgctactccaaggtcgtgatcgacgcgccattgccggacctccgggagctcgtcgtcggcggcggcggcgacatgagcgtacgcttcctccacggactccccagcctcgagacgctcgtcgttgtccagaacagcgtggagctgtaccgccccgacgccgacgccgcgccgcgcctcgcgcgcgccaccgtcgcgttccgcgagaggttcaagcgcgacgccgcgctgtccgcgctcggctacctctgcagggccgccattaacgtgacggatctcacgctgcgtctcacggggcctcagatgtgggtcgtcccggagagccctttcctggagatgcccagcctgaggaggctgctggtcgccgacgtgccgccgcgctgggacgcgacgtggatccgcgccgtcgtcgaggcggcggcgccgtcgcttgagcgcctccacgtccacttctcccaacactatcgccaagacgacgacgacccggcggcggatcgtcggagattggagatagtgtgggagaatgagccgtcaagaacacagcattgtgacaatctggaggagcttgtggtcattggtttccagagcaagaaagagaggcaggttcagtttgtgaggtacgtcatggaggaagcatccatggcgttgcgccgtgttgtgctgatcaagcatggacacgtcgaggatagaggcccaggtgaatgggagatggtgagccagaaatgtacttggagcgatgaggagaagctcgccgtgaaggagcagatcatggagggggtttgctgttcgatggaccaagttgaattggtcctagaataa
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| Protein seq | MMNKEGTERSPDEYHRNISDLPDDVLREILRRVNSRAALGAAALGKRWAGLARELPSLDLRVADILPRDYYLELRRRDEAKRSFWVYDYGKKYDAVIRRYERRAMRAMAACMKELSPSTPRRSVHRLAVEFIDTNSSNHINRLITTAVDAWGVEHLDVAAVLLTSSSSAQLDHPAYRFPDGRISDDPHGSRLRTLELTRCRPPDLRGFDALTTLVLRGLPRTTRAAVYERAVASCPSLRALHLVSCRCRYSKVVIDAPLPDLRELVVGGGGDMSVRFLHGLPSLETLVVVQNSVELYRPDADAAPRLARATVAFRERFKRDAALSALGYLCRAAINVTDLTLRLTGPQMWVVPESPFLEMPSLRRLLVADVPPRWDATWIRAVVEAAAPSLERLHVHFSQHYRQDDDDPAADRRRLEIVWENEPSRTQHCDNLEELVVIGFQSKKERQVQFVRYVMEEASMALRRVVLIKHGHVEDRGPGEWEMVSQKCTWSDEEKLAVKEQIMEGVCCSMDQVELVLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0024980 | OsLiXu_05g0024980.01 | Chr05 | 27715611 | 27717214 | - | NAM | ||
| CDS seq | atgatgaacaaggagggtaccgaacggagcccggacgagtaccaccgcaatatcagcgatctcccggacgatgtgctccgcgaaatcttgcgccgcgtcaactcccgcgccgcgctcggcgccgccgcgctgggcaagcgctgggccggcctcgcgcgcgagctgcccagcctcgatctgagggtcgccgacatcctgccgcgcgactactacctagagcttcgccggcgcgacgaggccaagaggtcgttctgggtgtacgactacggcaagaagtacgacgccgtcatcagacggtacgagcgccgcgccatgcgcgccatggccgcctgcatgaaggagctctcgccgtcgacgccgcgccggagcgtccacaggctcgcggtggagttcatcgacaccaacagctcgaaccacatcaaccgcctgatcaccacggccgtcgacgcgtggggcgtcgagcacctcgacgtcgccgccgttctcctgacgtcgtcgtcgtcggcgcagctggatcacccggcctacaggttccccgacggccgcatcagcgacgacccccacggctcccggctaaggacgctcgagctcaccagatgccggcctccggatctccgaggcttcgacgcgctcaccacgctggtcctgcgcggcttgccccgcacgacgcgggcggccgtctacgagcgcgccgtggcgagctgcccgtcgctccgagccctccacctcgtctcctgccgatgccgctactccaaggtcgtgatcgacgcgccattgccggacctccgggagctcgtcgtcggcggcggcggcgacatgagcgtacgcttcctccacggactccccagcctcgagacgctcgtcgttgtccagaacagcgtggagctgtaccgccccgacgccgacgccgcgccgcgcctcgcgcgcgccaccgtcgcgttccgcgagaggttcaagcgcgacgccgcgctgtccgcgctcggctacctctgcagggccgccattaacgtgacggatctcacgctgcgtctcacggggcctcagatgtgggtcgtcccggagagccctttcctggagatgcccagcctgaggaggctgctggtcgccgacgtgccgccgcgctgggacgcgacgtggatccgcgccgtcgtcgaggcggcggcgccgtcgcttgagcgcctccacgtccacttctcccaacactatcgccaagacgacgacgacccggcggcggatcgtcggagattggagatagtgtgggagaatgagccgtcaagaacacagcattgtgacaatctggaggagcttgtggtcattggtttccagagcaagaaagagaggcaggttcagtttgtgaggtacgtcatggaggaagcatccatggcgttgcgccgtgttgtgctgatcaagcatggacacgtcgaggatagaggcccaggtgaatgggagatggtgagccagaaatgtacttggagcgatgaggagaagctcgccgtgaaggagcagatcatggagggggtttgctgttcgatggaccaagttgaattggtcctagaataa
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| Protein seq | MMNKEGTERSPDEYHRNISDLPDDVLREILRRVNSRAALGAAALGKRWAGLARELPSLDLRVADILPRDYYLELRRRDEAKRSFWVYDYGKKYDAVIRRYERRAMRAMAACMKELSPSTPRRSVHRLAVEFIDTNSSNHINRLITTAVDAWGVEHLDVAAVLLTSSSSAQLDHPAYRFPDGRISDDPHGSRLRTLELTRCRPPDLRGFDALTTLVLRGLPRTTRAAVYERAVASCPSLRALHLVSCRCRYSKVVIDAPLPDLRELVVGGGGDMSVRFLHGLPSLETLVVVQNSVELYRPDADAAPRLARATVAFRERFKRDAALSALGYLCRAAINVTDLTLRLTGPQMWVVPESPFLEMPSLRRLLVADVPPRWDATWIRAVVEAAAPSLERLHVHFSQHYRQDDDDPAADRRRLEIVWENEPSRTQHCDNLEELVVIGFQSKKERQVQFVRYVMEEASMALRRVVLIKHGHVEDRGPGEWEMVSQKCTWSDEEKLAVKEQIMEGVCCSMDQVELVLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0540600 | SBH | 0.674430 | 1.075943 | 2.944175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46310 | SBH | 0.0 | 0.501996 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0540600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025260 | RBH | 0.148757 | 13.654342 | 5.781059 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025040 | RBH | 0.128789 | 2.098730 | 2.500044 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025050 | RBH | 1.698076 | 8.366786 | 11.805216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025090 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025080 | RBH | 2.216224 | 17.100189 | 20.046936 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0417000 | RBH | 2.878425 | 4.386779 | 4.190215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024730 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0428800 | SBH | 0.387055 | 1.208395 | 2.1538375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024910 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024790 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024980 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025020 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025020 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024470 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024890 | RBH | 0.000000 | 0.000000 | 0.154836 |
