Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g46310 | OGI:05072640 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:26845191-26845571 | ||||||||
| Gene Symbol | OsFbox270, Os_F0454, OsFbox275, Os_F0483 | ||||||||||
| DNA seq | ATGACAGATCTCATGCTGCGGCTAACTGGACCTCAAATGTGGGTCACGCCGGAGAGTCCTTTCTTAGAGATGCCCAGCCTGAGGAAGCTGCTGGTCGTGGACATGCCGCCGCGCTGGGATGCCACATGGATCTGTGCCCTTGTTGAGGAGGCTCCATCGCTTGAGAGACTCCACGTCCACTTTTCCCAACGTTGTGAAGACGATGATGAGATGGCCGTTCGTCGGAAGTTGGAGATAGTGTGGGAGCAGGAGCCCTCAAGAGCACTGCATTCTCATCTGGAGGAGTTGGTGGTCATTGGTTTTCAGATCAAGAAAGAAAGAAAGGTTCAGCTTGTGAGGCATATCATGGTCGTTGCGCCGTGTTGTTCTGCTCAAGCATGA |
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| CDS seq | ATGACAGATCTCATGCTGCGGCTAACTGGACCTCAAATGTGGGTCACGCCGGAGAGTCCTTTCTTAGAGATGCCCAGCCTGAGGAAGCTGCTGGTCGTGGACATGCCGCCGCGCTGGGATGCCACATGGATCTGTGCCCTTGTTGAGGAGGCTCCATCGCTTGAGAGACTCCACGTCCACTTTTCCCAACGTTGTGAAGACGATGATGAGATGGCCGTTCGTCGGAAGTTGGAGATAGTGTGGGAGCAGGAGCCCTCAAGAGCACTGCATTCTCATCTGGAGGAGTTGGTGGTCATTGGTTTTCAGATCAAGAAAGAAAGAAAGGTTCAGCTTGTGAGGCATATCATGGTCGTTGCGCCGTGTTGTTCTGCTCAAGCATGA |
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| Protein seq | MTDLMLRLTGPQMWVTPESPFLEMPSLRKLLVVDMPPRWDATWICALVEEAPSLERLHVHFSQRCEDDDEMAVRRKLEIVWEQEPSRALHSHLEELVVIGFQIKKERKVQLVRHIMVVAPCCSAQA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g46310 | LOC_Os05g46310.1 | Chr05 | 26845191 | 26845571 | + | MSU_osa1r7 | ||
| CDS seq | ATGACAGATCTCATGCTGCGGCTAACTGGACCTCAAATGTGGGTCACGCCGGAGAGTCCTTTCTTAGAGATGCCCAGCCTGAGGAAGCTGCTGGTCGTGGACATGCCGCCGCGCTGGGATGCCACATGGATCTGTGCCCTTGTTGAGGAGGCTCCATCGCTTGAGAGACTCCACGTCCACTTTTCCCAACGTTGTGAAGACGATGATGAGATGGCCGTTCGTCGGAAGTTGGAGATAGTGTGGGAGCAGGAGCCCTCAAGAGCACTGCATTCTCATCTGGAGGAGTTGGTGGTCATTGGTTTTCAGATCAAGAAAGAAAGAAAGGTTCAGCTTGTGAGGCATATCATGGTCGTTGCGCCGTGTTGTTCTGCTCAAGCATGA
More
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| Protein seq | MTDLMLRLTGPQMWVTPESPFLEMPSLRKLLVVDMPPRWDATWICALVEEAPSLERLHVHFSQRCEDDDEMAVRRKLEIVWEQEPSRALHSHLEELVVIGFQIKKERKVQLVRHIMVVAPCCSAQA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.501996 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0540600 | SBH | 0.674430 | 1.075943 | 2.944175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46320 | SBH | 0.433568 | 0.707263 | 0.720472 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0540600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025320 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025090 | RBH | 0.000000 | 0.000000 | 1.250522 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025090 | RBH | 0.000000 | 0.000000 | 2.733278 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025130 | RBH | 0.017354 | 0.154308 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025120 | RBH | 0.000000 | 0.000000 | 4.392835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0417500 | RBH | 0.565216 | 1.741472 | 4.004405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024770 | RBH | 0.0 | 0.0 | 0.468079 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0428800 | RBH | 0.387055 | 1.208395 | 2.1538375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024830 | RBH | 0.250468 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025020 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024930 | RBH | 0.0 | 0.927606 | 0.0 |
