Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g46320 | OGI:05072650 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:26846082-26847985 | ||||||||
| Gene Symbol | OsFbox275, Os_F0483 | ||||||||||
| DNA seq | ACTGTAAAAGTAACTTATAAAAAGTCGCACAGAAATAAATTAAGATCATAATGCATGCAGTATAACTTAAAGCATTGTAAACAAGTAACACACTGACATAACAGATGCATGCTTTATAACTTAAAGCCTTGTATACAAGTAACATAACAGATGCATGCTTTATAACTTAAAGCCTTGTATACAAGTAAAACATTAACATAACAGATCACTCTACAACTACTTGAACTGGAGTTATTGAGCAAGAATCTCTATCAGCAAACTGGTTCAGAATTTGGGCTTTCTCCTCATCATTCCAATGGTGTTGCTGCCTCACAATTTTCCAGTCCCAACGCCCCATTTCTTGAACATGCCCATATCTAAATAGAGCAACAAGCTGCAATGTTGTTGATACTTCCATCACAAAGTTAACAAAGTAAATCTGTCTTTCTGTTCCCTCGAAACCAATTACAACCAACTCTTTTAGTTCTTCATGCTGCAAAGTGGATGGTTGCCAAATGATTTCATCAAAAGAATCGTCATCCCAAGGGATAATATGGATGTGAAGGCTCTCCAGGCATGGTGCTGCTTCAAGTAGGAGGCGAGGCCAAGAGACATCCCATGATGAAGGCACATCAGCAATCAGGAGCCTTCTGAGATTAGCCAGCAACAACGAGGGGCAAGATGGCACGAACCATCTCCCATATCCAGTGAATCGTAGAACCAGGTTGGTTATGTTCTTGGTGAATCCAAGAAACTGCTGGATGTTCAAGTCCCAACCAATACATAAGTCACGCAGACGATTACGGTAACCATGGCGTAAGTTAAGGTTCATGTGCATAAGATGCGAGAAGGAGCAATGCTTATACCTGACCCAAGTCTCCCTTATAGCTATGCTCTCAAGCATCCCAAGAGAGTGTAGTGCAATGGCGCTGCAAAACTCCACAATAAGCTGCTTAATCCCTGACTTTGGGAAATCGATAACCAGAATGCCCCGGTCCGCCCACCTGCATGACTTGAGGTGTAGCACTTGCAACTGGGGGCATGACTTAAACACATCTTCATAGGATGCTTTGGCCACGGAGTTTCGCAAGTCTTGCAAGGTCATTTTGGTGAGAGCGTGGAACCCCTGCAATGGCGGAATGATACAACCACCTAGCTTCAAGCTTCTCAGCCGGGACTTGTGGGGCTCAATGCAGAGACCATGGTGAGGAAATCTGTGGACAATCGGCGGCAGAGACCACTCAGACCAATATGCAGGCTTAGCAAAAACTTCAAGATCCTCGACTTCCCAAGCATCCAATGCCTTGGTGATCAATCGGTTCATAAGATCGGTGTAGTGAGTCGCAAAGAACTCCACCCGCAGCACACGGGCCCTCCGTCGAGCTTGGCCAGCACATTCATCACTGCCATCCGCGTCTAACAAGCTATTGATGGAGGCCGCTATGTTTCGCATGGCAAGGCGCTCGTGTCGCTTGATACTTGCAACGAGAACCTTGACATCAACGGGATACGCAGCAAAACCAGCCGCTTGGTGGAGTTGGATGCACCTACGGTAGCGCGGCGGGAGTATTTCACCGACCATGAAATCGAGGGTGTCAAGCCAGCGCAGGAGCCGGGCCCAGCGCTTGGAGAGCATAGCGGTGGCGAGCGCGGCGCGGGTGGCGAGCCGCCGCAGGATGAGGAGGAGCACATCGTCGGAGAGGGCGCTGATGCGGTCGCCGCCGCGGGGAGCCACCTGTGCCCGGCAGCGACGAGGCCTATCCTTCCTCCTCCTCGCCACGTCGCGTAGGCGCGCGGAGATGCTCGCCGCCGCAGGCCGCGGGCGTCTGGCGGCGACAGAACGCACCTCCGGAGTTGCGAAGGGTGCGGTGGAGTGGGTGGAGGGCGGCGGCGCTGGCGCCATGGGCGGATCCATCTTGGGACAT
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| CDS seq | ATGGATCCGCCCATGGCGCCAGCGCCGCCGCCCTCCACCCACTCCACCGCACCCTTCGCAACTCCGGAGGTGCGTTCTGTCGCCGCCAGACGCCCGCGGCCTGCGGCGGCGAGCATCTCCGCGCGCCTACGCGACGTGGCGAGGAGGAGGAAGGATAGGCCTCGTCGCTGCCGGGCACAGGTGGCTCCCCGCGGCGGCGACCGCATCAGCGCCCTCTCCGACGATGTGCTCCTCCTCATCCTGCGGCGGCTCGCCACCCGCGCCGCGCTCGCCACCGCTATGCTCTCCAAGCGCTGGGCCCGGCTCCTGCGCTGGCTTGACACCCTCGATTTCATGGTCGGTGAAATACTCCCGCCGCGCTACCGTAGGTGCATCCAACTCCACCAAGCGGCTGGTTTTGCTGCGTATCCCGTTGATGTCAAGGTTCTCGTTGCAAGTATCAAGCGACACGAGCGCCTTGCCATGCGAAACATAGCGGCCTCCATCAATAGCTTGTTAGACGCGGATGGCAGTGATGAATGTGCTGGCCAAGCTCGACGGAGGGCCCGTGTGCTGCGGGTGGAGTTCTTTGCGACTCACTACACCGATCTTATGAACCGATTGATCACCAAGGCATTGGATGCTTGGGAAGTCGAGGATCTTGAAGTTTTTGCTAAGCCTGCATATTGGTCTGAGTGGTCTCTGCCGCCGATTGTCCACAGATTTCCTCACCATGGTCTCTGCATTGAGCCCCACAAGTCCCGGCTGAGAAGCTTGAAGCTAGGTGGTTGTATCATTCCGCCATTGCAGGGGTTCCACGCTCTCACCAAAATGACCTTGCAAGACTTGCGAAACTCCGTGGCCAAAGCATCCTATGAAGATGTGTTTAAGTCATGCCCCCAGTTGCAAGTGCTACACCTCAAGTCATGCAGGTGGGCGGACCGGGGCATTCTGGTTATCGATTTCCCAAAGTCAGGGATTAAGCAGCTTATTGTGGAGTTTTGCAGCGCCATTGCACTACACTCTCTTGGGATGCTTGAGAGCATAGCTATAAGGGAGACTTGGGTCAGGTATAAGCATTGCTCCTTCTCGCATCTTATGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTGGTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGA
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| Protein seq | MDPPMAPAPPPSTHSTAPFATPEVRSVAARRPRPAAASISARLRDVARRRKDRPRRCRAQVAPRGGDRISALSDDVLLLILRRLATRAALATAMLSKRWARLLRWLDTLDFMVGEILPPRYRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQARRRARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKHCSFSHLMHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSLLLANLRRLLIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIWQPSTLQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQHHWNDEEKAQILNQFADRDSCSITPVQVVVE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g46320 | LOC_Os05g46320.1 | Chr05 | 26846082 | 26847985 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATCCGCCCATGGCGCCAGCGCCGCCGCCCTCCACCCACTCCACCGCACCCTTCGCAACTCCGGAGGTGCGTTCTGTCGCCGCCAGACGCCCGCGGCCTGCGGCGGCGAGCATCTCCGCGCGCCTACGCGACGTGGCGAGGAGGAGGAAGGATAGGCCTCGTCGCTGCCGGGCACAGGTGGCTCCCCGCGGCGGCGACCGCATCAGCGCCCTCTCCGACGATGTGCTCCTCCTCATCCTGCGGCGGCTCGCCACCCGCGCCGCGCTCGCCACCGCTATGCTCTCCAAGCGCTGGGCCCGGCTCCTGCGCTGGCTTGACACCCTCGATTTCATGGTCGGTGAAATACTCCCGCCGCGCTACCGTAGGTGCATCCAACTCCACCAAGCGGCTGGTTTTGCTGCGTATCCCGTTGATGTCAAGGTTCTCGTTGCAAGTATCAAGCGACACGAGCGCCTTGCCATGCGAAACATAGCGGCCTCCATCAATAGCTTGTTAGACGCGGATGGCAGTGATGAATGTGCTGGCCAAGCTCGACGGAGGGCCCGTGTGCTGCGGGTGGAGTTCTTTGCGACTCACTACACCGATCTTATGAACCGATTGATCACCAAGGCATTGGATGCTTGGGAAGTCGAGGATCTTGAAGTTTTTGCTAAGCCTGCATATTGGTCTGAGTGGTCTCTGCCGCCGATTGTCCACAGATTTCCTCACCATGGTCTCTGCATTGAGCCCCACAAGTCCCGGCTGAGAAGCTTGAAGCTAGGTGGTTGTATCATTCCGCCATTGCAGGGGTTCCACGCTCTCACCAAAATGACCTTGCAAGACTTGCGAAACTCCGTGGCCAAAGCATCCTATGAAGATGTGTTTAAGTCATGCCCCCAGTTGCAAGTGCTACACCTCAAGTCATGCAGGTGGGCGGACCGGGGCATTCTGGTTATCGATTTCCCAAAGTCAGGGATTAAGCAGCTTATTGTGGAGTTTTGCAGCGCCATTGCACTACACTCTCTTGGGATGCTTGAGAGCATAGCTATAAGGGAGACTTGGGTCAGGTATAAGCATTGCTCCTTCTCGCATCTTATGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTGGTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGA
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| Protein seq | MDPPMAPAPPPSTHSTAPFATPEVRSVAARRPRPAAASISARLRDVARRRKDRPRRCRAQVAPRGGDRISALSDDVLLLILRRLATRAALATAMLSKRWARLLRWLDTLDFMVGEILPPRYRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQARRRARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKHCSFSHLMHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSLLLANLRRLLIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIWQPSTLQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQHHWNDEEKAQILNQFADRDSCSITPVQVVVE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.433568 | 0.707263 | 0.720472 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0540600 | RBH | 0.674430 | 1.075943 | 2.944175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46300 | RBH | 0.101166 | 0.051593 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0540600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025330 | RBH | 0.562390 | 3.045586 | 2.512818 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025080 | RBH | 0.000000 | 0.832688 | 0.784207 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025080 | RBH | 0.122071 | 0.646219 | 2.633886 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025140 | RBH | 0.039097 | 0.032339 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025110 | SBH | 1.717064 | 1.887975 | 7.678845 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0417600 | RBH | 2.2354875 | 5.746275 | 7.90138 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024780 | RBH | 0.189135 | 0.0 | 0.209252 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0428900 | RBH | 2.0627725 | 4.039159 | 8.7358465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024960 | RBH | 0.173001 | 0.064667 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024840 | RBH | 0.0 | 4.840193 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025030 | RBH | 1.289396 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025030 | RBH | 0.237853 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025080 | RBH | 0.0 | 1.382269 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024520 | RBH | 0.085815 | 1.802847 | 1.165330 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024940 | RBH | 0.192939 | 3.310890 | 1.220308 |
