Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_05g0022910 OGI:05068400 | 15/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr05:26185987-26188709
Gene Symbol OsTFIIF2-1, OsRAP30-1
DNA seq

cagttaaatgaactagcatattcaagaagcatcagtgtcccctgtagatttcttgtactcaggcttgagctcatgcgttccctggtttggtcttcgtttgttgtaaaaacacagatcattcagaatctccttcaggaattgctgcataaaacgaagcacaaacaatcacaaagcaaccattgagagtaatgaataaaatatttgttgttcataggaacaccacaaataaagtatcttaaccaatgtttttttcacttaaaaatagagacgccaaataaatcaagaatatacctctggctggtcagtttcttgcaccagcgcctttagtgcccaattgggctgtctttcaaaaagcttgaatataatattttccagttccctgcgatccctacgtattctttttgcatcagatggtttggttggtgtttgcttcttcttctcctgaagagcacaaaattaaatgtgttatgagaaactttaactgatgatgagtagttcaagatgaagaggccgaccgcatgattggcatttggcaacatggtaaagataaaaaaaaaaagtagaggaaatcaagtactgaactcattttataagccataatcagagagaaatcagacaacatgtatgcagatccttactacctagatagcactctattaacttgaaataacatccaccacagaaattaaacacctagagttattaagaatgttgatctatatcattaatgataacagaagaacaaaaaggaaatctcaatcttcatttcggaaaatgaaagcaccttagaaccagaaggtatgagaccaaccatgccaggcaacggtatcaggctcattctgtgatcctcaattaccttcaagtagggaacaaaaccacaaatcagaatgctttaaaattacggtaatgtaagatagccaatgaaggactgcagtacttcacctgcacttttctagttttgatcatggacttttgtgtcctttcacggcataactttccatagttcaccaaattatcactgtgaggcttcatgtcaaatttatgctcgacttttccttcacatgaaagtttccctacaacacacaaaggtcatttttgggtgatagtcaaaacttagatgctattgaaacttgaaagatccccaaaaatgtaagtagtaataaaaaatccataagaatcactggtaaccagtaagggtaactttctgactgggaacgcagtaaactgccagtgatagctcacctccagtcaagattcttgaaggcttactagttactaattaaatcaatccggacaccattgactttggcaaacaacatgatagtatttttcctatatattggagtaacttggacaaaagatgcacacacacgaaggattatgtgaaggccccttagcacaagtgctaaatagatggctactaaaccacaaacaagtttaggaaatactgatcttacaataaccacctagtcacccatgcttcatagtacaaagcatgcactcaaacttgtaggaagccccagacataggatcaataaatgtccaacaataagcacctagtcacctactcattccagtctgattcatgcttcatagtacaaaagcatgcacttaaacttgtgggaagccccaaacgtagtatgtctaaactcatacaggtaaaatcaagtatgattgtatgaacagacttctgacatacaggaacgagtaaaaactatgtctatcaggatagtaatatgtacagagaaaaagaacgcaagcagtataagttaacaagctgggaattggactcctaccttggttagactcagagaaaacacacattggtacaaaatccttggacatattcaaggagtaactctttggtgtattgccagtgttagtttgagccatctccatcttgaactgccatgccaatagcaccatgttataatgaatgatgtaactataggcaccacaagcaaaaagaaatgagtgatgaaactaacatagaacggggaacaattatcaaacagagcagagcagtatgacgtatcccgctctaattaaacctctgcactcttcaatgcatctgattctgtctagcaattcgcaaatgggaaatcaactgaaatgttacccatccaatcaatcgtattatcacattcggcagtcaaaccctccaccactacatctatgttacggtcggtgcagaattttgtcccatttttcccaagcataatgcatgaaatctacatttgaggttcatacattaccaacccccacggccatagggtcatatcattttgctcgaagagaatgtactaccattcgaatccgcaaggagagggagtgggcgggggaggcttgcctggagggagggctcctcggagcggaggaggtcaagggagaggacgaccttggcgacgacggggttagggttggagccggcggcggaggaggaggacacggcgccctgccaggcgtgcgagacgaccggggggcacttcatcagccacacggagcgctcggcccgcgccgtctcgaggtacttggcctcctcgcccatcccgccgccccacgctggtggctccgcgctcgcagtctgcccggcgattccggtgtcggcggcggcggcggcggcgctagggcacggagcggcgggcgatctggcttaacgacggagcgagcgggcgaaggggaggcacatgcggagggcgtgacgtgcagttagatgaacgaac

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CDS seq

atgggcgaggaggccaagtacctcgagacggcgcgggccgagcgctccgtgtggctgatgaagtgccccccggtcgtctcgcacgcctggcagggcgccgtgtcctcctcctccgccgccggctccaaccctaaccccgtcgtcgccaaggtcgtcctctcccttgacctcctccgctccgaggagccctccctccagttcaagatggagatggctcaaactaacactggcaatacaccaaagagttactccttgaatatgtccaaggattttgtaccaatgtgtgttttctctgagtctaaccaagggaaactttcatgtgaaggaaaagtcgagcataaatttgacatgaagcctcacagtgataatttggtgaactatggaaagttatgccgtgaaaggacacaaaagtccatgatcaaaactagaaaagtgcaggtaattgaggatcacagaatgagcctgataccgttgcctggcatggttggtctcataccttctggttctaaggagaagaagaagcaaacaccaaccaaaccatctgatgcaaaaagaatacgtagggatcgcagggaactggaaaatattatattcaagctttttgaaagacagcccaattgggcactaaaggcgctggtgcaagaaactgaccagccagagcaattcctgaaggagattctgaatgatctgtgtttttacaacaaacgaagaccaaaccagggaacgcatgagctcaagcctgagtacaagaaatctacaggggacactgatgcttcttga

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Protein seq

MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSEEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRRPNQGTHELKPEYKKSTGDTDAS

Function Transcription initiation factor IIF subunit beta [UniProtKB/Swiss-Prot:O94424]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_05g0022910 OsLiXu_05g0022910.01 Chr05 26185987 26188709 - NAM
CDS seq

atgggcgaggaggccaagtacctcgagacggcgcgggccgagcgctccgtgtggctgatgaagtgccccccggtcgtctcgcacgcctggcagggcgccgtgtcctcctcctccgccgccggctccaaccctaaccccgtcgtcgccaaggtcgtcctctcccttgacctcctccgctccgaggagccctccctccagttcaagatggagatggctcaaactaacactggcaatacaccaaagagttactccttgaatatgtccaaggattttgtaccaatgtgtgttttctctgagtctaaccaagggaaactttcatgtgaaggaaaagtcgagcataaatttgacatgaagcctcacagtgataatttggtgaactatggaaagttatgccgtgaaaggacacaaaagtccatgatcaaaactagaaaagtgcaggtaattgaggatcacagaatgagcctgataccgttgcctggcatggttggtctcataccttctggttctaaggagaagaagaagcaaacaccaaccaaaccatctgatgcaaaaagaatacgtagggatcgcagggaactggaaaatattatattcaagctttttgaaagacagcccaattgggcactaaaggcgctggtgcaagaaactgaccagccagagcaattcctgaaggagattctgaatgatctgtgtttttacaacaaacgaagaccaaaccagggaacgcatgagctcaagcctgagtacaagaaatctacaggggacactgatgcttcttga

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Protein seq

MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSEEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRRPNQGTHELKPEYKKSTGDTDAS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 0.520200

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0509900 RBH 0.371271 0.180587 3.710377
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g43450 RBH 0.251073 0.120895 0.954173
Nipponbare | IRGSP 1.0 | RAP-db Os05g0509900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0023100 RBH 0.000000 0.000000 5.276453
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0023050 RBH 0.097841 0.816333 2.181246
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0022990 RBH 0.0 7.618470 8.038158
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0022980 RBH 0.0 0.268360 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0023060 RBH 0.000000 5.251153 15.869485
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0391600 RBH 1.842459 2.6723675 9.0859955
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0022650 RBH 0.082275 0.154924 0.779140
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0401200 RBH 2.571616 2.1752595 13.6504085
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0022820 RBH 0.0 0.124881 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0022720 RBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0022890 RBH 0.0 12.237388 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0034540 RBH 1.376460 0.423298 2.443838
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0022920 RBH 0.0 9.343026 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G022340 RBH 0.0 4.793576 3.805283
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0022750 SBH 0.945786 6.357644 13.547286
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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