Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0022920 | OGI:05068400 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:26067125-26069847 | ||||||||
| Gene Symbol | OsTFIIF2-1, OsRAP30-1 | ||||||||||
| DNA seq | CAGTTAAATGAACTAGCATATTCAAGAAGCATCAGTGTCCCCTGTAGATTTCTTGTACTCAGGCTTGAGCTCATGCGTTCCCTGgtttggtcttcgtttgttgtaaaaacacagatcattcagaatctccttcaggaattgctgcataaaacgaagcacaaacaatcacaaagcaaccattgagagtaatgaataaaatatttgttgttcataggaacaccAcaaataaagtatcttaaccaatgtttttttcacttaaaaatagagacgccaaataaatcaagaatatacctctggctggtcagtttcttgcaccagcgcctttagtgcccaattgggctgtctttcaaaaagcttgaatataatattttccagttccctgcgatccctacgtattcTttttTGCATCAGATGGTTTGGTTGGTGTTTGCTTCTTCTTCTCCTGAAGAGCACAAAATTAAATGTGTTATGAGAAACTTTAACTGATGATGAGTAGTTCAAGATGAAGAGGCCGACCGCATGATTGGCATTTGGCAACATGGTAAAGATAAAAAAAAAAGTAGAGGAAATCAAGTACTGAACTCATTTTATAAGCCATAATCAGAGAGAAATCAGACAACATGTATGCAGATCCTTACTACctagatagcactctattaacttgaaataacatccaccacagaaattaaacacctagagttattaagaatgttgatctatatcattaatgataacagaagaacaaaaaggaaatctcaatcttcatttcggaaaatgaaagcaccttagaaccagaaggtatgagaccaaccatgccaggcaacggtatcaggctcattctgtgatcctcaattaccttcaagtagggaacaaaaccacaaatcagaatgctttaaaattacggtaatgtaagatagccaatgaaggactgcagtacttcacctgcacttttctagttttgatcatggacttttgtgtcctttcacggcatAactttccatagttcaccAaattatcactgtgaggcttcatgtcaaatttatgctcgacttttccttcacatgaaagtttccctacaacacacaaaggtcatttttgggtgatagtcaaaacttagatgctattgaaacttgaaagatCcccaaaaatgtaagtagtaataaaaaatccataagaatcactggtaaccagtaagggtaactttctgactgggaacgcagtaaactgccagtgatagctcacctccagtcaagattcttgaaggcttactagttactaattaaatcaatccggacaccattgactttggcaaacaacatgatagtatttttcctatatattggagtaacttggacaaaagatgcacacacacgaaggattatgtgaaggccccttagcacaagtgctaaatagatggctactaaaccacaaacaagtttaggaaatactgatcttacaataACCacctagtcacccatgcttcatagtacaaagcatgcactcaaacttgtaggaagccccagacataggatcaataaatgtccaacaataagcacctagtcacctactcattccagtctgattcatgcttcatagtacaaaagcatgcacttaaacttgtgggaagccccaaacgtagtatgtctaaactcatacaggtaaaatcaagtatgattgtatgaacagacttctgacatacaggaacgagtaaaaactatgtctatcaggatagtaatatgtacagagaaaaagaacgcaagcagtataagttaacaagctgggaattggactcctaccttggttagactcagagaaaacacacattggtacaaaatccttggacatattcaaggagtaactctttggtgtattgccagtgttagtttgagccatctccatcttgaactgccatgccaatagcaccatgttataatgaatgatgtaactataggcaCcacaagcaaaaagaaatgagtgatgaaactaacatagaacggggaacaattatcaaacagagcagagcagtatgacgtatcccgctctaattaaacctctgcactcttcaatgcatctgattctgtctagcaattcgcaaatgggaaatcaactgaaatgttacccatccaatcaatcgtattatcacattcggcagtcaaaCcctccaccactacatctatgttacggtcggtgcagaattttgtcccatttttcccaagcataatgcatgaaatctacatttgaggttcatacattaccaaCccccacggccatagggtcatatcattttgctcgaagagaatgtactaccattcgaatccgcaaggagagggagtgggcgggggaggcttgcctggagggagggctcctcggagcggaggaggtcaagggagaggacgaccttggcgacgacggggttagggttggagccggcggcggaggaggaggacacggcgccctgccaggcgtgcgagacgaccggggggcacttcatcagccacacggagcgctcggcccgcgccgtctcgaggtacttggcctcctcgcccatcccgccgccccacgctggtggctccgcgctcgcagtctgcccggcgattCcggtgtcggcggcggcggcggcggcgctagggcacggagcggcgggcgatctggcttaacgacggagcgagcgggcgaaggggaggcacatgcggagggcgtgacgtgcagttagatgaacgaac
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| CDS seq | atgggcgaggaggccaagtacctcgagacggcgcgggccgagcgctccgtgtggctgatgaagtgccccccggtcgtctcgcacgcctggcagggcgccgtgtcctcctcctccgccgccggctccaaccctaaccccgtcgtcgccaaggtcgtcctctcccttgacctcctccgctccgaggagccctccctccagttcaagatggagatggctcaaactaacactggcaatacaccaaagagttactccttgaatatgtccaaggattttgtaccaatgtgtgttttctctgagtctaaccaagggaaactttcatgtgaaggaaaagtcgagcataaatttgacatgaagcctcacagtgataattTggtgaactatggaaagtTatgccgtgaaaggacacaaaagtccatgatcaaaactagaaaagtgcaggtaattgaggatcacagaatgagcctgataccgttgcctggcatggttggtctcataccttctggttctaagGAGAAGAAGAAGCAAACACCAACCAAACCATCTGATGCAaaaaAgaatacgtag
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| Protein seq | MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSEEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAKKNT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0022920 | OsLaMu_05g0022920.01 | Chr05 | 26067125 | 26069847 | - | NAM | ||
| CDS seq | atgggcgaggaggccaagtacctcgagacggcgcgggccgagcgctccgtgtggctgatgaagtgccccccggtcgtctcgcacgcctggcagggcgccgtgtcctcctcctccgccgccggctccaaccctaaccccgtcgtcgccaaggtcgtcctctcccttgacctcctccgctccgaggagccctccctccagttcaagatggagatggctcaaactaacactggcaatacaccaaagagttactccttgaatatgtccaaggattttgtaccaatgtgtgttttctctgagtctaaccaagggaaactttcatgtgaaggaaaagtcgagcataaatttgacatgaagcctcacagtgataattTggtgaactatggaaagtTatgccgtgaaaggacacaaaagtccatgatcaaaactagaaaagtgcaggtaattgaggatcacagaatgagcctgataccgttgcctggcatggttggtctcataccttctggttctaagGAGAAGAAGAAGCAAACACCAACCAAACCATCTGATGCAaaaaAgaatacgtag
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| Protein seq | MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSEEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAKKNT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 9.343026 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0509900 | RBH | 0.371271 | 0.180587 | 3.710377 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43450 | RBH | 0.251073 | 0.120895 | 0.954173 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0509900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023100 | RBH | 0.000000 | 0.000000 | 5.276453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023050 | RBH | 0.097841 | 0.816333 | 2.181246 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022990 | RBH | 0.0 | 7.618470 | 8.038158 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022980 | RBH | 0.0 | 0.268360 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023060 | RBH | 0.000000 | 5.251153 | 15.869485 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0391600 | RBH | 1.842459 | 2.6723675 | 9.0859955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022650 | RBH | 0.082275 | 0.154924 | 0.779140 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0401200 | RBH | 2.571616 | 2.1752595 | 13.6504085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022820 | RBH | 0.0 | 0.124881 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022720 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022890 | RBH | 0.0 | 12.237388 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022910 | RBH | 0.000000 | 0.000000 | 0.520200 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034350 | RBH | 0.711075 | 6.020734 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022340 | RBH | 0.0 | 4.793576 | 3.805283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022750 | SBH | 0.945786 | 6.357644 | 13.547286 |
