Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0008490 | OGI:05022410 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:8339448-8343145 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccctgttttgctgccaattgcagctttcaagcatggcaagacgaataagagatccttttccttaattttgtttggtcattccctttcagctttgattttcctggtatgacatgaagcattgttcagattatttgttgtctgaagcccttatcaagatttgattccaggtttgtatttccctatctgatcttcaagttgttttcttctgataatgaggttccccatgctgtggtaccggttttatttgatgttgatagccatagcctttcagaatttcctccataatgagtagtcttagcgcaatgcaatttcaacatcccttacaggattcaccatagtgcaaatgacctaaaagtttcgaaattatgagtttaatacatttaaagttgtaaaagcttgctaaatgttcagtttcaaattcattttagatttcaataaacaaagaataagcacaatcaacctaaactgttcatcaagcggctagcaacttgtcaaggaggcctgagagtagcagaacattttttttcatttctttttgataaatgaagctttcttaatctcagacaattacatccaggtgataaaattatactaagactactcctaatttaagtttttcctttttttaaaaaaaaatagattagattaaacccggcctctgcacctttgtggggtatatacagccaaacaaagtcacgagtacgtaagattttgccattacatgggaaaaaaaactaagtttaacagatccggaaagaagaacaaaagactaagcttcgattcttcttctaaaatcccaaccaaaagtaaagtaaaactccaagactcgttttcttcttcagttttacctgcattgtaatttttttttcattttccagtttttacactttcactcaaattacctatcaaattttgacattctgccctgtgaagtttcagattacctagaaactcaagctttcaataaactaacaacgatggaggacggcatggatttcagccctcataaaaatagcacagaacagaatcgaaccagctttgaagaagatgatcaattcagcattcgatcagcaccctccaaaccatctccagacaagaaatcgaagcccaagaacaagccgaatcatcactccgacaagacggcgaacccaccgccgcagaggcccgagacgacggcggcgccggtgacgacgaccgcagcagcagcaacagcaggaacaaaccgtggcgaggccgtcagcaacggcagcctggacagcatcagcagcggcagcacacggagcaacagcctggagagcagcagcaccggcgccgcggcggcgccaacggtgctgacgacatcggcgtcgacggcgtcggtgtcggcgtcggggcagaacgtgaagcggcacaccggcggggacagccggtgggaggcggtccaggcggcgacggcgcgcgacgcgccggcgccgctgagcctggcgcacttccggctgctgaagcggctggggtacggcgacatcgggagcgtgtacctggtggagctccgcggcacgtcggccttcttcgccatgaaggtgatggacaaggcgtcgatcgcgagccggaacaagatggcgcgcgcggagacggagcgcgagatcctgggcctcctcgaccaccccttcctccccacgctctacacccacttcgagaccgacaagttctactgcctcgtcatggagtactgctctggcggcaacctccattccctccggcagaagcagccctccaagcacttctccgagcccgccgccaggtcaggttccacttcggaattttaacaaattgtttccacggagcttggagcagtttgaggaaattaacctccgtcaagtttgaacaaatttagacagcagtaactttggtaacaggaggcagggttcactccatcggttaaccccttttgatcggaggtcaccgaaagttccaaaatttagttgaatttaaacaaatattactaaaattcatgaaaaaattgaaaagtttaaaattttcagccgaagtaatattgtatcgtaggggaaatttccagccctggcaggaggtgctaaaatttgcagaataattttagaaggaattttagtcattagaaaagtatctcgaggtatttaaatttgacattagaaattttagtaatagtacatgaaggtactaagttttatatttgaaaataaaggagctcccaatatcttttaaggatgataaaattaccctattttttaacattgctagagtaattaattcgatatgcggtttgacaatactaaccttattagttgcttaaaaaatcaacgagtgattttcctacgctcgaggatgtaccaagaagcacaatattttctagtataaattttggtacatttatctatagtcatgtatcacgattgacaacaaaatatatctatcgcctgtacctcatgtatcatcattctattgtagatttgatctgaaaattgaaacttgcgtccgataatttgatctaaaaaaaatatgaaacttacgtgggaaaatttgaactttgatgcgtcgtcaggttttatgtggcagaggtgctactggcgctggagtacctgcacatgctggggatcgtgtacagggacctcaagccggagaacgtcctggtgagggacgacggccacatcatgctctccgacttcgacctctccctccgctgcaccgtctgccccaccctcgtcaagtcctcctccgtccacgccaccggcagcggcggcagcggcagcggcggcggcataggtagcagaggagacgccatcgacggcggcgagagcatgccggcgaaccagggctgcatccagccctcctccttcttcccgcgcatcctgccgcggcgcagccgcaaggcgtccaagagcgacatgggcctgctgctcaacggcgcggcggcggtggagttcaacgcggagccgacggaggcgcggtccatgtcgttcgtgggcacgcacgagtacctggccccggagatcatccgcggcgagggccacggcagcgccgtcgactggtggacgctggggatcttcctctacgagctcatccacggcgccaccccgttcaagggcgccggcaaccgcgccacgctctgcaacgtcatcgagcagccgctccgcttcccctccgacggcggcgccagcgccgtcgcgcgtgacctcatccgcggcctgctcgtcaaggagccccacaagcggatcgccttcaccaggggcgccaccgagatcaagcagcaccccttcttcgacggcgtcaactgggcgctcgtcaggagcctcacgccgccgtcggtgccggagccggtcgacttccggcagtacgccgccgccgcgtccgccaccactcccaaggacaagaagccgccggagaacgccgccgcccccgccgcggcggatggtggcggcgcggccaactcgagcaccggcgagtcctacactgactttgagtatttttaattagtactatatatttcctgacaatattgttgtgcacaccagattgttttgatcgatggttgtgaagtatgagaactcgattcgtgataattaagttgtactaactcattcttggactatggtagattcattgtaaacctaaaattcatatgaaaatgtagcgatttcattttattggtttgttatatgtgaacatctgttacttgttattgt
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| CDS seq | atggaggacggcatggatttcagccctcataaaaatagcacagaacagaatcgaaccagctttgaagaagatgatcaattcagcattcgatcagcaccctccaaaccatctccagacaagaaatcgaagcccaagaacaagccgaatcatcactccgacaagacggcgaacccaccgccgcagaggcccgagacgacggcggcgccggtgacgacgaccgcagcagcagcaacagcaggaacaaaccgtggcgaggccgtcagcaacggcagcctggacagcatcagcagcggcagcacacggagcaacagcctggagagcagcagcaccggcgccgcggcggcgccaacggtgctgacgacatcggcgtcgacggcgtcggtgtcggcgtcggggcagaacgtgaagcggcacaccggcggggacagccggtgggaggcggtccaggcggcgacggcgcgcgacgcgccggcgccgctgagcctggcgcacttccggctgctgaagcggctggggtacggcgacatcgggagcgtgtacctggtggagctccgcggcacgtcggccttcttcgccatgaaggtgatggacaaggcgtcgatcgcgagccggaacaagatggcgcgcgcggagacggagcgcgagatcctgggcctcctcgaccaccccttcctccccacgctctacacccacttcgagaccgacaagttctactgcctcgtcatggagtactgctctggcggcaacctccattccctccggcagaagcagccctccaagcacttctccgagcccgccgccaggttttatgtggcagaggtgctactggcgctggagtacctgcacatgctggggatcgtgtacagggacctcaagccggagaacgtcctggtgagggacgacggccacatcatgctctccgacttcgacctctccctccgctgcaccgtctgccccaccctcgtcaagtcctcctccgtccacgccaccggcagcggcggcagcggcagcggcggcggcataggtagcagaggagacgccatcgacggcggcgagagcatgccggcgaaccagggctgcatccagccctcctccttcttcccgcgcatcctgccgcggcgcagccgcaaggcgtccaagagcgacatgggcctgctgctcaacggcgcggcggcggtggagttcaacgcggagccgacggaggcgcggtccatgtcgttcgtgggcacgcacgagtacctggccccggagatcatccgcggcgagggccacggcagcgccgtcgactggtggacgctggggatcttcctctacgagctcatccacggcgccaccccgttcaagggcgccggcaaccgcgccacgctctgcaacgtcatcgagcagccgctccgcttcccctccgacggcggcgccagcgccgtcgcgcgtgacctcatccgcggcctgctcgtcaaggagccccacaagcggatcgccttcaccaggggcgccaccgagatcaagcagcaccccttcttcgacggcgtcaactgggcgctcgtcaggagcctcacgccgccgtcggtgccggagccggtcgacttccggcagtacgccgccgccgcgtccgccaccactcccaaggacaagaagccgccggagaacgccgccgcccccgccgcggcggatggtggcggcgcggccaactcgagcaccggcgagtcctacactgactttgagtatttttaa
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| Protein seq | MEDGMDFSPHKNSTEQNRTSFEEDDQFSIRSAPSKPSPDKKSKPKNKPNHHSDKTANPPPQRPETTAAPVTTTAAAATAGTNRGEAVSNGSLDSISSGSTRSNSLESSSTGAAAAPTVLTTSASTASVSASGQNVKRHTGGDSRWEAVQAATARDAPAPLSLAHFRLLKRLGYGDIGSVYLVELRGTSAFFAMKVMDKASIASRNKMARAETEREILGLLDHPFLPTLYTHFETDKFYCLVMEYCSGGNLHSLRQKQPSKHFSEPAARFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVCPTLVKSSSVHATGSGGSGSGGGIGSRGDAIDGGESMPANQGCIQPSSFFPRILPRRSRKASKSDMGLLLNGAAAVEFNAEPTEARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIFLYELIHGATPFKGAGNRATLCNVIEQPLRFPSDGGASAVARDLIRGLLVKEPHKRIAFTRGATEIKQHPFFDGVNWALVRSLTPPSVPEPVDFRQYAAAASATTPKDKKPPENAAAPAAADGGGAANSSTGESYTDFEYF |
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| Function | Serine/threonine-protein kinase AGC1-7 [UniProtKB/Swiss-Prot:Q1PFB9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0008490 | OsLiXu_05g0008490.01 | Chr05 | 8339448 | 8343145 | + | NAM | ||
| CDS seq | atggaggacggcatggatttcagccctcataaaaatagcacagaacagaatcgaaccagctttgaagaagatgatcaattcagcattcgatcagcaccctccaaaccatctccagacaagaaatcgaagcccaagaacaagccgaatcatcactccgacaagacggcgaacccaccgccgcagaggcccgagacgacggcggcgccggtgacgacgaccgcagcagcagcaacagcaggaacaaaccgtggcgaggccgtcagcaacggcagcctggacagcatcagcagcggcagcacacggagcaacagcctggagagcagcagcaccggcgccgcggcggcgccaacggtgctgacgacatcggcgtcgacggcgtcggtgtcggcgtcggggcagaacgtgaagcggcacaccggcggggacagccggtgggaggcggtccaggcggcgacggcgcgcgacgcgccggcgccgctgagcctggcgcacttccggctgctgaagcggctggggtacggcgacatcgggagcgtgtacctggtggagctccgcggcacgtcggccttcttcgccatgaaggtgatggacaaggcgtcgatcgcgagccggaacaagatggcgcgcgcggagacggagcgcgagatcctgggcctcctcgaccaccccttcctccccacgctctacacccacttcgagaccgacaagttctactgcctcgtcatggagtactgctctggcggcaacctccattccctccggcagaagcagccctccaagcacttctccgagcccgccgccaggttttatgtggcagaggtgctactggcgctggagtacctgcacatgctggggatcgtgtacagggacctcaagccggagaacgtcctggtgagggacgacggccacatcatgctctccgacttcgacctctccctccgctgcaccgtctgccccaccctcgtcaagtcctcctccgtccacgccaccggcagcggcggcagcggcagcggcggcggcataggtagcagaggagacgccatcgacggcggcgagagcatgccggcgaaccagggctgcatccagccctcctccttcttcccgcgcatcctgccgcggcgcagccgcaaggcgtccaagagcgacatgggcctgctgctcaacggcgcggcggcggtggagttcaacgcggagccgacggaggcgcggtccatgtcgttcgtgggcacgcacgagtacctggccccggagatcatccgcggcgagggccacggcagcgccgtcgactggtggacgctggggatcttcctctacgagctcatccacggcgccaccccgttcaagggcgccggcaaccgcgccacgctctgcaacgtcatcgagcagccgctccgcttcccctccgacggcggcgccagcgccgtcgcgcgtgacctcatccgcggcctgctcgtcaaggagccccacaagcggatcgccttcaccaggggcgccaccgagatcaagcagcaccccttcttcgacggcgtcaactgggcgctcgtcaggagcctcacgccgccgtcggtgccggagccggtcgacttccggcagtacgccgccgccgcgtccgccaccactcccaaggacaagaagccgccggagaacgccgccgcccccgccgcggcggatggtggcggcgcggccaactcgagcaccggcgagtcctacactgactttgagtatttttaa
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| Protein seq | MEDGMDFSPHKNSTEQNRTSFEEDDQFSIRSAPSKPSPDKKSKPKNKPNHHSDKTANPPPQRPETTAAPVTTTAAAATAGTNRGEAVSNGSLDSISSGSTRSNSLESSSTGAAAAPTVLTTSASTASVSASGQNVKRHTGGDSRWEAVQAATARDAPAPLSLAHFRLLKRLGYGDIGSVYLVELRGTSAFFAMKVMDKASIASRNKMARAETEREILGLLDHPFLPTLYTHFETDKFYCLVMEYCSGGNLHSLRQKQPSKHFSEPAARFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVCPTLVKSSSVHATGSGGSGSGGGIGSRGDAIDGGESMPANQGCIQPSSFFPRILPRRSRKASKSDMGLLLNGAAAVEFNAEPTEARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIFLYELIHGATPFKGAGNRATLCNVIEQPLRFPSDGGASAVARDLIRGLLVKEPHKRIAFTRGATEIKQHPFFDGVNWALVRSLTPPSVPEPVDFRQYAAAASATTPKDKKPPENAAAPAAADGGGAANSSTGESYTDFEYF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.341590 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0237400 | RBH | 0.0 | 0.0 | 0.738145 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g14750 | RBH | 0.0 | 0.0 | 0.322101 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0237400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0008420 | RBH | 0.0 | 0.0 | 1.914095 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008470 | RBH | 0.0 | 0.0 | 2.141462 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008350 | RBH | 0.0 | 0.0 | 2.878816 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0008430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008500 | RBH | 0.0 | 1.592620 | 2.284526 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0125800 | RBH | 0.0367965 | 0.032132 | 0.049864 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008340 | RBH | 0.0 | 0.0 | 1.420100 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0125600 | RBH | 0.0209595 | 0.017256 | 0.0260795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0008380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0008420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009250 | RBH | 0.0 | 0.0 | 0.234072 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008240 | RBH | 0.000000 | 1.360807 | 2.965966 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0008520 | RBH | 0.000000 | 2.805933 | 6.891221 |
