Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0027760 | OGI:04094500 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:34376491-34377743 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtccagcgcaagccaaagcttctcgaatgccgcgcaggggccgccgtcgtcgccgccgtgcaggggccgccgtcgccgccgccaccgccgccgcgcaggggccaccgtcgccgtcgtgccttcagcgtggccgtcgccgccgtgccttcagcgtggccgccgccgccgcgccgtccagatcgggtgaaagggtagggttttgctagtcaggaaggatatgctagtctggaaggatatgccgcacttccccaaaccatccaccgatccaaacttcattccaaacgcgaaactacgattctacccttccacccttgctcaatcgcgcaggccacaccacgaccaagtcggtaccccgaggtaccaactaatcctgaccattcgatctgtcatcatcaacggttgggatttcagtacctcgcggtactagtaccttgcggtacaaaaagaaggaccagagcaattctcgtgtctcgaaggtgcttttggagaaggcggcgtgcaaattcgcggaggagaacgacatcagcctcatcaccgtgctcccggtgttcaccttgggcgcggcgccgacgccgttgaccacaacaagcatcccaactacgctctccttgctgtctggtgagagcctgagaaacatacgtcaaatttaagaagctactcttttatttgttcagattcaagatatatcacattttatatttgatttgtttattttagaattaagagagtatgtacttccattatgtgttacgattgacgttgtttctttttcaggtgatgaggcgcagctaaaaaccctgaaaggcctggcggccaccggctccattccggtggttcacgtggacgacgtctgccgcgccgagatattcctcgcggagaaggagtcggcgtcggggaggtacatctgcagcagcctcagcaccaccgtgatggcgctcgcacgtttcgcggcagcaaaataccctcagtacaacgtccaaaccgactggtacatatacacgaactggcactttcagtttcaactttcaagtgactgatcgatcgacacatgcatttcttgagagaacctgatgagccagcgataatctttgtttgctcgtagtttcgaagggttccctgagaagccgagagtgtgctattcgtcggagaagctgacgagggaagggttcgagttcaagtggacggatctggacgagatattcggcgacctcgtcgagtacggcaaggccctggggattctaccgcactga
More
|
||||||||||
| CDS seq | atggtccagcgcaagccaaagcttctcgaatgccgcgcaggggccgccgtcgtcgccgccgtgcaggggccgccgtcgccgccgccaccgccgccgcgcaggggccaccgtcgccgtcgtgccttcagcgtggccgtcgccgccgtgccttcagcgtggccgccgccgccgcgccgtccagatcggctaaaaaccctgaaaggcctggcggccaccggctccattccggtggttcacgtggacgacgtctgccgcgccgagatattcctcgcggagaaggagtcggcgtcggggaggtacatctgcagcagcctcagcaccaccgtgatggcgctcgcacgtttcgcggcagcaaaataccctcagtacaacgtccaaaccgactgtttcgaagggttccctgagaagccgagagtgtgctattcgtcggagaagctgacgagggaagggttcgagttcaagtggacggatctggacgagatattcggcgacctcgtcgagtacggcaaggccctggggattctaccgcactga
More
|
||||||||||
| Protein seq | MVQRKPKLLECRAGAAVVAAVQGPPSPPPPPPRRGHRRRRAFSVAVAAVPSAWPPPPRRPDRLKTLKGLAATGSIPVVHVDDVCRAEIFLAEKESASGRYICSSLSTTVMALARFAAAKYPQYNVQTDCFEGFPEKPRVCYSSEKLTREGFEFKWTDLDEIFGDLVEYGKALGILPH |
||||||||||
| Function | Anthocyanidin reductase ((2S)-flavan-3-ol-forming) [UniProtKB/Swiss-Prot:D7U6G6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0027760 | OsLiXu_04g0027760.01 | Chr04 | 34376491 | 34377743 | + | NAM | ||
| CDS seq | atggtccagcgcaagccaaagcttctcgaatgccgcgcaggggccgccgtcgtcgccgccgtgcaggggccgccgtcgccgccgccaccgccgccgcgcaggggccaccgtcgccgtcgtgccttcagcgtggccgtcgccgccgtgccttcagcgtggccgccgccgccgcgccgtccagatcggctaaaaaccctgaaaggcctggcggccaccggctccattccggtggttcacgtggacgacgtctgccgcgccgagatattcctcgcggagaaggagtcggcgtcggggaggtacatctgcagcagcctcagcaccaccgtgatggcgctcgcacgtttcgcggcagcaaaataccctcagtacaacgtccaaaccgactgtttcgaagggttccctgagaagccgagagtgtgctattcgtcggagaagctgacgagggaagggttcgagttcaagtggacggatctggacgagatattcggcgacctcgtcgagtacggcaaggccctggggattctaccgcactga
More
|
|||||||
| Protein seq | MVQRKPKLLECRAGAAVVAAVQGPPSPPPPPPRRGHRRRRAFSVAVAAVPSAWPPPPRRPDRLKTLKGLAATGSIPVVHVDDVCRAEIFLAEKESASGRYICSSLSTTVMALARFAAAKYPQYNVQTDCFEGFPEKPRVCYSSEKLTREGFEFKWTDLDEIFGDLVEYGKALGILPH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0631000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53920 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0631000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027720 | SBH | 0.156616 | 17.306736 | 4.177543 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028500 | SBH | 0.000000 | 0.760544 | 4.581150 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028190 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027980 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028230 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0506200 | SBH | 11.1147975 | 40.342945 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026930 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0510100 | SBH | 0.01568 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027320 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027200 | SBH | 0.0 | 27.686531 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027780 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027830 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027120 | SBH | 0.0 | 0.0 | 0.700998 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027070 | SBH | 0.0 | 0.000000 | 8.159698 |
