Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0020950 | OGI:04079900 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:28541744-28544359 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gactacgattcgcaggatcgtcgaaatctgaattgtttaatgcacgccccttgtggcctcatctgtaaccaatttgagtagaactactaccatatgccctgtgttagttgcaactccctctcgagcacgatatttctaaggccggtgcagtctgtctgtctgtgtagtgtagcgaggagtgtgaacgatgtgatgccactgccagtatgccacacacaaccagtaaacctgggataatggttggtgtccggtgttcatgcattgactcgaatagcgagtcttctgttcagacatttgatgctatgactcgaatagcggtgactacacatcatatgccctgtgctaattgcaactcccaaacggaagcaaatctcccgatgggtaatcaccgcttgctgctgctcctcctcctcctgctcgcggtcgttggctctgatcatgggggcgtgctcgccgccgacgagttcacctacaacggcttcggcggtgccaacctcacgctcgacggcatggccgccgtggcgcccaacggcctcctcgtgctcagcaacggcacgaaccagatggccgggcacgcgttccacccgacgccgatccgcctgcggggcggcgcggcgggcggcgccgtccagtccttctcggccgcgttcgtcttcgccatcgtgtccaacttcaccgtgctgagcgacaacggcatggcgttcgtggtcgcgcccagcacgcggctctccaccttcaacgccggccagtacctcggcatcctcaacgtcaccgacaacggcaacgccgataacaacatcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaaccacatcggcgtcgacatcaacagcatgaagtccgtgcagaaccacagcgccggctactacgacgaagccacgggggccttcaacaatctgagcttgatcagccgccagccgatgcaggtgtgggtggactacgacggcgccaccacggtgctcaacgtgacgatggcgccgctcgacgttcccaagcccagtaagcccctcatctccgcgcccgtcaacctctcgtccgtcgtgaccgacacggcgtacgtcgggttctcggcggccacgggcgtcatctacacgcggcactacgttctcggctggagcttctcccagaacggcgccgctccttctctccacacctcaagcctcccggcgctgccgcggttcgggccgaagccccgttccaaggtgctggagatcgtgctcccgatcgccaccgcggcgttcgtcctcgcgctggtcatcgccgccttcctgttcgtccggaggcgggtgaggtacgccgaggtgcgggaggactgggaggtggagttcggaccgcaccgcttctcctacaaggagctctaccaggcgacaaaggggttcaagaacaagcagctgctcggcaccggcggattcggcagggtgtacaagggcgtgctcgcgaaatccaacctcgagatcgccgtgaagagggtgtcgcacgactcgaagcaagggatgaaggagttcatcgcggaggtcgtcagcatcggccacctccggcaccgcaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtgtacgactacatgtccaacggcagcctcgacaagtacttgtacgacaagaccaagcctgttcttgattgggggcagaggtttcagatcatcaagggcgtcgcctccggcctgctctacctccacgaggactgggagcaggtcgtcatccaccgggacatcaaggcgagcaacgtgctcctcgacggcgagatgaacggcaggctgggcgacttcggcctcgcgaggctgtacgaccacggcgttgacccgcagacgacgcacgtcgtcggcaccatgggttacctcgccccggagctggtgcgcacgggcaaggcgacgccggtcaccgacgtgttcgcgttcggcgtgttcgtgctggaggtcacctgcgggcggcggccgctcggctgcatcgcgcccgacgaccagaacgtgctgctggactgggtgcaggagcacgagcgccggcacgcggccctcgacacggtggacgcgaggctgtgcggcaagtacgacgccgacgaggcgaggctggcgctcaagctggggctcatgtgcgcgcacccgttgcccgacgcgcgccccaccatgcgccaggtcacgcagtacctggacggcgacgcacccatgccggaggtggcgccgacgatggtgagctacaccatgctggcgctgatgcagaacgacgggttcgactcgttcgccatgtccttcccttccaccgtcacgtcgaccgccagccccatgtccgccgacgtctcggccgtgtccggcctctccggtggaaggtgaacaaacaaacaaaaaggccgccgcaaaataatggtcacaacaacccgttctcctggtgacttgtcatctatcgtgtaacatagtgtagagcactagtgactacgtagtagtgaggtcactgttcactgctgattaccacagtatatccccatattagtttaccaatcaagcagtaatacgtatattacagtgagtgtgc
More
|
||||||||||
| CDS seq | atgccacacacaaccagtaaacctgggataatggttggtgtccggtgttcatgcattgactcgaatagcgagtcttctgttcagacatttgatgctatgactcgaatagcggtgactacacatcatatgccctgtgctaattgcaactcccaaacggaagcaaatctcccgatgggtaatcaccgcttgctgctgctcctcctcctcctgctcgcggtcgttggctctgatcatgggggcgtgctcgccgccgacgagttcacctacaacggcttcggcggtgccaacctcacgctcgacggcatggccgccgtggcgcccaacggcctcctcgtgctcagcaacggcacgaaccagatggccgggcacgcgttccacccgacgccgatccgcctgcggggcggcgcggcgggcggcgccgtccagtccttctcggccgcgttcgtcttcgccatcgtgtccaacttcaccgtgctgagcgacaacggcatggcgttcgtggtcgcgcccagcacgcggctctccaccttcaacgccggccagtacctcggcatcctcaacgtcaccgacaacggcaacgccgataacaacatcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaaccacatcggcgtcgacatcaacagcatgaagtccgtgcagaaccacagcgccggctactacgacgaagccacgggggccttcaacaatctgagcttgatcagccgccagccgatgcaggtgtgggtggactacgacggcgccaccacggtgctcaacgtgacgatggcgccgctcgacgttcccaagcccagtaagcccctcatctccgcgcccgtcaacctctcgtccgtcgtgaccgacacggcgtacgtcgggttctcggcggccacgggcgtcatctacacgcggcactacgttctcggctggagcttctcccagaacggcgccgctccttctctccacacctcaagcctcccggcgctgccgcggttcgggccgaagccccgttccaaggtgctggagatcgtgctcccgatcgccaccgcggcgttcgtcctcgcgctggtcatcgccgccttcctgttcgtccggaggcgggtgaggtacgccgaggtgcgggaggactgggaggtggagttcggaccgcaccgcttctcctacaaggagctctaccaggcgacaaaggggttcaagaacaagcagctgctcggcaccggcggattcggcagggtgtacaagggcgtgctcgcgaaatccaacctcgagatcgccgtgaagagggtgtcgcacgactcgaagcaagggatgaaggagttcatcgcggaggtcgtcagcatcggccacctccggcaccgcaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtcacctgcgggcggcggccgctcggctgcatcgcgcccgacgaccagaacgtgctgctggactgggtgcaggagcacgagcgccggcacgcggccctcgacacggtggacgcgaggctgtgcggcaagtacgacgccgacgaggcgaggctggcgctcaagctggggctcatgtgcgcgcacccgttgcccgacgcgcgccccaccatgcgccaggtcacgcagtacctggacggcgacgcacccatgccggaggtggcgccgacgatggtgagctacaccatgctggcgctgatgcagaacgacgggttcgactcgttcgccatgtccttcccttccaccgtcacgtcgaccgccagccccatgtccgccgacgtctcggccgtgtccggcctctccggtggaaggtga
More
|
||||||||||
| Protein seq | MPHTTSKPGIMVGVRCSCIDSNSESSVQTFDAMTRIAVTTHHMPCANCNSQTEANLPMGNHRLLLLLLLLLAVVGSDHGGVLAADEFTYNGFGGANLTLDGMAAVAPNGLLVLSNGTNQMAGHAFHPTPIRLRGGAAGGAVQSFSAAFVFAIVSNFTVLSDNGMAFVVAPSTRLSTFNAGQYLGILNVTDNGNADNNIFAVELDTMLNPEFQDMNSNHIGVDINSMKSVQNHSAGYYDEATGAFNNLSLISRQPMQVWVDYDGATTVLNVTMAPLDVPKPSKPLISAPVNLSSVVTDTAYVGFSAATGVIYTRHYVLGWSFSQNGAAPSLHTSSLPALPRFGPKPRSKVLEIVLPIATAAFVLALVIAAFLFVRRRVRYAEVREDWEVEFGPHRFSYKELYQATKGFKNKQLLGTGGFGRVYKGVLAKSNLEIAVKRVSHDSKQGMKEFIAEVVSIGHLRHRNLVQLLGYCRRKGELLLVTCGRRPLGCIAPDDQNVLLDWVQEHERRHAALDTVDARLCGKYDADEARLALKLGLMCAHPLPDARPTMRQVTQYLDGDAPMPEVAPTMVSYTMLALMQNDGFDSFAMSFPSTVTSTASPMSADVSAVSGLSGGR |
||||||||||
| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0020950 | OsLiXu_04g0020950.01 | Chr04 | 28541744 | 28544160 | + | NAM | ||
| CDS seq | atgccacacacaaccagtaaacctgggataatggttggtgtccggtgttcatgcattgactcgaatagcgagtcttctgttcagacatttgatgctatgactcgaatagcggtgactacacatcatatgccctgtgctaattgcaactcccaaacggaagcaaatctcccgatgggtaatcaccgcttgctgctgctcctcctcctcctgctcgcggtcgttggctctgatcatgggggcgtgctcgccgccgacgagttcacctacaacggcttcggcggtgccaacctcacgctcgacggcatggccgccgtggcgcccaacggcctcctcgtgctcagcaacggcacgaaccagatggccgggcacgcgttccacccgacgccgatccgcctgcggggcggcgcggcgggcggcgccgtccagtccttctcggccgcgttcgtcttcgccatcgtgtccaacttcaccgtgctgagcgacaacggcatggcgttcgtggtcgcgcccagcacgcggctctccaccttcaacgccggccagtacctcggcatcctcaacgtcaccgacaacggcaacgccgataacaacatcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaaccacatcggcgtcgacatcaacagcatgaagtccgtgcagaaccacagcgccggctactacgacgaagccacgggggccttcaacaatctgagcttgatcagccgccagccgatgcaggtgtgggtggactacgacggcgccaccacggtgctcaacgtgacgatggcgccgctcgacgttcccaagcccagtaagcccctcatctccgcgcccgtcaacctctcgtccgtcgtgaccgacacggcgtacgtcgggttctcggcggccacgggcgtcatctacacgcggcactacgttctcggctggagcttctcccagaacggcgccgctccttctctccacacctcaagcctcccggcgctgccgcggttcgggccgaagccccgttccaaggtgctggagatcgtgctcccgatcgccaccgcggcgttcgtcctcgcgctggtcatcgccgccttcctgttcgtccggaggcgggtgaggtacgccgaggtgcgggaggactgggaggtggagttcggaccgcaccgcttctcctacaaggagctctaccaggcgacaaaggggttcaagaacaagcagctgctcggcaccggcggattcggcagggtgtacaagggcgtgctcgcgaaatccaacctcgagatcgccgtgaagagggtgtcgcacgactcgaagcaagggatgaaggagttcatcgcggaggtcgtcagcatcggccacctccggcaccgcaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtcacctgcgggcggcggccgctcggctgcatcgcgcccgacgaccagaacgtgctgctggactgggtgcaggagcacgagcgccggcacgcggccctcgacacggtggacgcgaggctgtgcggcaagtacgacgccgacgaggcgaggctggcgctcaagctggggctcatgtgcgcgcacccgttgcccgacgcgcgccccaccatgcgccaggtcacgcagtacctggacggcgacgcacccatgccggaggtggcgccgacgatggtgagctacaccatgctggcgctgatgcagaacgacgggttcgactcgttcgccatgtccttcccttccaccgtcacgtcgaccgccagccccatgtccgccgacgtctcggccgtgtccggcctctccggtggaaggtga
More
|
|||||||
| Protein seq | MPHTTSKPGIMVGVRCSCIDSNSESSVQTFDAMTRIAVTTHHMPCANCNSQTEANLPMGNHRLLLLLLLLLAVVGSDHGGVLAADEFTYNGFGGANLTLDGMAAVAPNGLLVLSNGTNQMAGHAFHPTPIRLRGGAAGGAVQSFSAAFVFAIVSNFTVLSDNGMAFVVAPSTRLSTFNAGQYLGILNVTDNGNADNNIFAVELDTMLNPEFQDMNSNHIGVDINSMKSVQNHSAGYYDEATGAFNNLSLISRQPMQVWVDYDGATTVLNVTMAPLDVPKPSKPLISAPVNLSSVVTDTAYVGFSAATGVIYTRHYVLGWSFSQNGAAPSLHTSSLPALPRFGPKPRSKVLEIVLPIATAAFVLALVIAAFLFVRRRVRYAEVREDWEVEFGPHRFSYKELYQATKGFKNKQLLGTGGFGRVYKGVLAKSNLEIAVKRVSHDSKQGMKEFIAEVVSIGHLRHRNLVQLLGYCRRKGELLLVTCGRRPLGCIAPDDQNVLLDWVQEHERRHAALDTVDARLCGKYDADEARLALKLGLMCAHPLPDARPTMRQVTQYLDGDAPMPEVAPTMVSYTMLALMQNDGFDSFAMSFPSTVTSTASPMSADVSAVSGLSGGR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0020950 | OsLiXu_04g0020950.02 | Chr04 | 28542086 | 28544359 | + | IsoSeq | ||
| CDS seq | ctaattgcaactcccaaacggaagcaaatctcccgatgggtaatcaccgcttgctgctgctcctcctcctcctgctcgcggtcgttggctctgatcatgggggcgtgctcgccgccgacgagttcacctacaacggcttcggcggtgccaacctcacgctcgacggcatggccgccgtggcgcccaacggcctcctcgtgctcagcaacggcacgaaccagatggccgggcacgcgttccacccgacgccgatccgcctgcggggcggcgcggcgggcggcgccgtccagtccttctcggccgcgttcgtcttcgccatcgtgtccaacttcaccg
More
|
|||||||
| Protein seq | LIATPKRKQISRWVITACCCSSSSCSRSLALIMGACSPPTSSPTTASAVPTSRSTAWPPWRPTASSCSATARTRWPGTRSTRRRSACGAARRAAPSSPSRPRSSSPSCPTSP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.795003 | 2.274477 | 0.303707 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0531500 | RBH | 5.997754 | 4.817526 | 1.337930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44910 | RBH | 3.722449 | 2.971283 | 0.341306 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0531500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020910 | RBH | 0.567446 | 24.027630 | 1.886490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021660 | RBH | 0.144073 | 11.597372 | 0.947428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021390 | RBH | 0.708469 | 16.166603 | 2.720187 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021130 | RBH | 0.152188 | 0.396554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021320 | RBH | 1.369691 | 25.612370 | 4.012975 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0417300 | RBH | 4.5502275 | 92.878513 | 2.1329885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020110 | RBH | 0.307208 | 1.008627 | 0.138219 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0417900 | RBH | 5.4319575 | 74.2992895 | 0.9643105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020620 | RBH | 0.154849 | 0.371062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020450 | RBH | 0.090416 | 18.526466 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020560 | RBH | 0.0 | 80.370331 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026330 | SBH | 0.0 | 0.281021 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021120 | RBH | 0.087982 | 11.521097 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020390 | RBH | 0.351470 | 3.472494 | 0.663258 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020330 | RBH | 0.533187 | 44.560345 | 0.876718 |
