Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKYG_04g0020450		OGI:04079900 \| 16/16			KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)			Chr04:27778923-27781549		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		GACTACGATTCGCAGGATCGTCGAAATCTGAATTGTTTAATGCACGCCCCTTGTGGCCTCATCTGTAACCAATTTGAGTAGAACTACTACCATATGCCCTGTGTTAGTTGCAACTCCCTCTCGAGCACGATATTTCTAAGGCCGGTGCAGTCTGTCTGTCTGTGTAGTGTAGCGAGGAGTGTGAACGATGTGATGCCACTGCCAGTATGCCACACACAACCAGTAAACCTGGGATAATGGTTGGTGTCCGGTGTTCATGCATTGACTCGAATAGCGAGTCTTCTGTTCAGACATTTGATGCTATGACTCGAATAGCGGTGACTACACATCATATGCCCTGTGCTAATTGCAACTCCCAAACGGAAGCAAATCTCCCGATGGGTAATCACCGCTTGCTGCTGCTCCTCCTCCTCCTGCTCGCGGTCGTTGGCTCTGATCATGGGGGCGTGCTCGCCGCCGACGAGTTCACCTACAACGGCTTCGGCGGTGCCAACCTCACGCTCGACGGCATGGCCGCCGTGGCGCCCAACGGCCTCCTCGTGCTCAGCAACGGCACGAACCAGATGGCCGGGCACGCGTTCCACCCGACGCCGATCCGCCTGCGGGGCGGCGCGGCGGGCGGCGCCGTCCAGTCCTTCTCGGCCGCGTTCGTCTTCGCCATCGTGTCCAACTTCACCGTGCTGAGCGACAACGGCATGGCGTTCGTGGTCGCGCCCAGCACGCGGCTCTCCACCTTCAACGCCGGCCAGTACCTCGGCATCCTCAACGTCACCGACAACGGCAACGCCGATAACAACATCTTCGCCGTCGAGCTCGACACCATGCTCAACCCGGAGTTCCAGGACATGAACAGCAACCACATCGGCGTCGACATCAACAGCATGAAGTCCGTGCAGAACCACAGCGCCGGCTACTACGACGAAGCCACGGGGGCCTTCAACAATCTGAGCTTGATCAGCCGCCAGCCGATGCAGGTGTGGGTGGACTACGACGGCGCCACCACGGTGCTCAACGTGACGATGGCGCCGCTCGACGTTCCCAAGCCCAGTAAGCCCCTCATCTCCGCGCCCGTCAACCTCTCGTCCGTCGTGACCGACACGGCGTACGTCGGGTTCTCGGCGGCCACGGGCGTCATCTACACGCGGCACTACGTTCTCGGCTGGAGCTTCTCCCAGAACGGCGCCGCTCCTTCTCTCCACACCTCAAGCCTCCCGGCGCTGCCGCGGTTCGGGCCGAAGCCCCGTTCCAAGGTGCTGGAGATCGTGCTCCCGATCGCCACCGCGGCGTTCGTCCTCGCGCTGGTCATCGCCGCCTTCCTGTTCGTCCGGAGGCGGGTGAGGTACGCCGAGGTGCGGGAGGACTGGGAGGTGGAGTTCGGACCGCACCGCTTCTCCTACAAGGAGCTCTACCAGGCGACAAAGGGGTTCAAGAACAAGCAGCTGCTCGGCACCGGCGGATTCGGCAGGGTGTACAAGGGCGTGCTCGCGAAATCCAACCTCGAGATCGCCGTGAAGAGGGTGTCGCACGACTCGAAGCAAGGGATGAAGGAGTTCATCGCGGAGGTCGTCAGCATCGGCCACCTCCGGCACCGCAACCTCGTGCAGCTGCTCGGCTACTGCCGGCGCAAGGGCGAGCTCCTGCTGGTGTACGACTACATGTCCAACGGCAGCCTCGACAAGTACTTGTACGACAAGACCAAGCCTGTTCTTGATTGGGGGCAGAGGTTTCAGATCATCAAGGGCGTCGCCTCCGGCCTGCTCTACCTCCACGAGGACTGGGAGCAGGTCGTCATCCACCGGGACATCAAGGCGAGCAACGTGCTCCTCGACGGCGAGATGAACGGCAGGCTGGGCGACTTCGGCCTCGCGAGGCTGTACGACCACGGCGTTGACCCGCAGACGACGCACGTCGTCGGCACCATGGGTTACCTCGCCCCGGAGCTGGTGCGCACGGGCAAGGCGACGCCGGTCACCGACGTGTTCGCGTTCGGCGTGTTCGTGCTGGAGGTCACCTGCGGGCGGCGGCCGCTCGGCTGCATCGCGCCCGACGACCAGAACGTGCTGCTGGACTGGGTGCAGGAGCACGAGCGCCGGCACGCGGCCCTCGACACGGTGGACGCGAGGCTGTGCGGCAAGTACGACGCCGACGAGGCGAGGCTGGCGCTCAAGCTGGGGCTCATGTGCGCGCACCCGTTGCCCGACGCGCGCCCCACCATGCGCCAGGTCACGCAGTACCTGGACGGCGACGCACCCATGCCGGAGGTGGCGCCGACGATGGTGAGCTACACCATGCTGGCGCTGATGCAGAACGACGGGTTCGACTCGTTCGCCATGTCCTTCCCTTCCACCGTCACGTCGACCGCCAGCCCCATGTCCGCCGACGTCTCGGCCGTGTCCGGCCTCTCCGGTGGAAGGTGAACAAACAAACAAAAAGGCCGCCGCAAAATAATGGTCACAACAACCCGTTCTCCTGGTGACTTGTCATCTATCGTGTAACATAGTGTAGAGCACTAGTGACTACGTAGTAGTGAGGTCACTGTTCACTGCTGATTACCACAGTATATCCCCATATTAGTTTACCAATCAAGCAGTAATACGTATATTACAGTGAGTGTGCAAAGCTTCGAG More
CDS seq		ATGCCACACACAACCAGTAAACCTGGGATAATGGTTGGTGTCCGGTGTTCATGCATTGACTCGAATAGCGAGTCTTCTGTTCAGACATTTGATGCTATGACTCGAATAGCGGTGACTACACATCATATGCCCTGTGCTAATTGCAACTCCCAAACGGAAGCAAATCTCCCGATGGGTAATCACCGCTTGCTGCTGCTCCTCCTCCTCCTGCTCGCGGTCGTTGGCTCTGATCATGGGGGCGTGCTCGCCGCCGACGAGTTCACCTACAACGGCTTCGGCGGTGCCAACCTCACGCTCGACGGCATGGCCGCCGTGGCGCCCAACGGCCTCCTCGTGCTCAGCAACGGCACGAACCAGATGGCCGGGCACGCGTTCCACCCGACGCCGATCCGCCTGCGGGGCGGCGCGGCGGGCGGCGCCGTCCAGTCCTTCTCGGCCGCGTTCGTCTTCGCCATCGTGTCCAACTTCACCGTGCTGAGCGACAACGGCATGGCGTTCGTGGTCGCGCCCAGCACGCGGCTCTCCACCTTCAACGCCGGCCAGTACCTCGGCATCCTCAACGTCACCGACAACGGCAACGCCGATAACAACATCTTCGCCGTCGAGCTCGACACCATGCTCAACCCGGAGTTCCAGGACATGAACAGCAACCACATCGGCGTCGACATCAACAGCATGAAGTCCGTGCAGAACCACAGCGCCGGCTACTACGACGAAGCCACGGGGGCCTTCAACAATCTGAGCTTGATCAGCCGCCAGCCGATGCAGGTGTGGGTGGACTACGACGGCGCCACCACGGTGCTCAACGTGACGATGGCGCCGCTCGACGTTCCCAAGCCCAGTAAGCCCCTCATCTCCGCGCCCGTCAACCTCTCGTCCGTCGTGACCGACACGGCGTACGTCGGGTTCTCGGCGGCCACGGGCGTCATCTACACGCGGCACTACGTTCTCGGCTGGAGCTTCTCCCAGAACGGCGCCGCTCCTTCTCTCCACACCTCAAGCCTCCCGGCGCTGCCGCGGTTCGGGCCGAAGCCCCGTTCCAAGGTGCTGGAGATCGTGCTCCCGATCGCCACCGCGGCGTTCGTCCTCGCGCTGGTCATCGCCGCCTTCCTGTTCGTCCGGAGGCGGGTGAGGTACGCCGAGGTGCGGGAGGACTGGGAGGTGGAGTTCGGACCGCACCGCTTCTCCTACAAGGAGCTCTACCAGGCGACAAAGGGGTTCAAGAACAAGCAGCTGCTCGGCACCGGCGGATTCGGCAGGGTGTACAAGGGCGTGCTCGCGAAATCCAACCTCGAGATCGCCGTGAAGAGGGTGTCGCACGACTCGAAGCAAGGGATGAAGGAGTTCATCGCGGAGGTCGTCAGCATCGGCCACCTCCGGCACCGCAACCTCGTGCAGCTGCTCGGCTACTGCCGGCGCAAGGGCGAGCTCCTGCTGGTCACCTGCGGGCGGCGGCCGCTCGGCTGCATCGCGCCCGACGACCAGAACGTGCTGCTGGACTGGGTGCAGGAGCACGAGCGCCGGCACGCGGCCCTCGACACGGTGGACGCGAGGCTGTGCGGCAAGTACGACGCCGACGAGGCGAGGCTGGCGCTCAAGCTGGGGCTCATGTGCGCGCACCCGTTGCCCGACGCGCGCCCCACCATGCGCCAGGTCACGCAGTACCTGGACGGCGACGCACCCATGCCGGAGGTGGCGCCGACGATGGTGAGCTACACCATGCTGGCGCTGATGCAGAACGACGGGTTCGACTCGTTCGCCATGTCCTTCCCTTCCACCGTCACGTCGACCGCCAGCCCCATGTCCGCCGACGTCTCGGCCGTGTCCGGCCTCTCCGGTGGAAGGTGA More
Protein seq		MPHTTSKPGIMVGVRCSCIDSNSESSVQTFDAMTRIAVTTHHMPCANCNSQTEANLPMGNHRLLLLLLLLLAVVGSDHGGVLAADEFTYNGFGGANLTLDGMAAVAPNGLLVLSNGTNQMAGHAFHPTPIRLRGGAAGGAVQSFSAAFVFAIVSNFTVLSDNGMAFVVAPSTRLSTFNAGQYLGILNVTDNGNADNNIFAVELDTMLNPEFQDMNSNHIGVDINSMKSVQNHSAGYYDEATGAFNNLSLISRQPMQVWVDYDGATTVLNVTMAPLDVPKPSKPLISAPVNLSSVVTDTAYVGFSAATGVIYTRHYVLGWSFSQNGAAPSLHTSSLPALPRFGPKPRSKVLEIVLPIATAAFVLALVIAAFLFVRRRVRYAEVREDWEVEFGPHRFSYKELYQATKGFKNKQLLGTGGFGRVYKGVLAKSNLEIAVKRVSHDSKQGMKEFIAEVVSIGHLRHRNLVQLLGYCRRKGELLLVTCGRRPLGCIAPDDQNVLLDWVQEHERRHAALDTVDARLCGKYDADEARLALKLGLMCAHPLPDARPTMRQVTQYLDGDAPMPEVAPTMVSYTMLALMQNDGFDSFAMSFPSTVTSTASPMSADVSAVSGLSGGR
Function		L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_04g0020450	OsKYG_04g0020450.01	Chr04	27778923	27781339	+	NAM
CDS seq	ATGCCACACACAACCAGTAAACCTGGGATAATGGTTGGTGTCCGGTGTTCATGCATTGACTCGAATAGCGAGTCTTCTGTTCAGACATTTGATGCTATGACTCGAATAGCGGTGACTACACATCATATGCCCTGTGCTAATTGCAACTCCCAAACGGAAGCAAATCTCCCGATGGGTAATCACCGCTTGCTGCTGCTCCTCCTCCTCCTGCTCGCGGTCGTTGGCTCTGATCATGGGGGCGTGCTCGCCGCCGACGAGTTCACCTACAACGGCTTCGGCGGTGCCAACCTCACGCTCGACGGCATGGCCGCCGTGGCGCCCAACGGCCTCCTCGTGCTCAGCAACGGCACGAACCAGATGGCCGGGCACGCGTTCCACCCGACGCCGATCCGCCTGCGGGGCGGCGCGGCGGGCGGCGCCGTCCAGTCCTTCTCGGCCGCGTTCGTCTTCGCCATCGTGTCCAACTTCACCGTGCTGAGCGACAACGGCATGGCGTTCGTGGTCGCGCCCAGCACGCGGCTCTCCACCTTCAACGCCGGCCAGTACCTCGGCATCCTCAACGTCACCGACAACGGCAACGCCGATAACAACATCTTCGCCGTCGAGCTCGACACCATGCTCAACCCGGAGTTCCAGGACATGAACAGCAACCACATCGGCGTCGACATCAACAGCATGAAGTCCGTGCAGAACCACAGCGCCGGCTACTACGACGAAGCCACGGGGGCCTTCAACAATCTGAGCTTGATCAGCCGCCAGCCGATGCAGGTGTGGGTGGACTACGACGGCGCCACCACGGTGCTCAACGTGACGATGGCGCCGCTCGACGTTCCCAAGCCCAGTAAGCCCCTCATCTCCGCGCCCGTCAACCTCTCGTCCGTCGTGACCGACACGGCGTACGTCGGGTTCTCGGCGGCCACGGGCGTCATCTACACGCGGCACTACGTTCTCGGCTGGAGCTTCTCCCAGAACGGCGCCGCTCCTTCTCTCCACACCTCAAGCCTCCCGGCGCTGCCGCGGTTCGGGCCGAAGCCCCGTTCCAAGGTGCTGGAGATCGTGCTCCCGATCGCCACCGCGGCGTTCGTCCTCGCGCTGGTCATCGCCGCCTTCCTGTTCGTCCGGAGGCGGGTGAGGTACGCCGAGGTGCGGGAGGACTGGGAGGTGGAGTTCGGACCGCACCGCTTCTCCTACAAGGAGCTCTACCAGGCGACAAAGGGGTTCAAGAACAAGCAGCTGCTCGGCACCGGCGGATTCGGCAGGGTGTACAAGGGCGTGCTCGCGAAATCCAACCTCGAGATCGCCGTGAAGAGGGTGTCGCACGACTCGAAGCAAGGGATGAAGGAGTTCATCGCGGAGGTCGTCAGCATCGGCCACCTCCGGCACCGCAACCTCGTGCAGCTGCTCGGCTACTGCCGGCGCAAGGGCGAGCTCCTGCTGGTCACCTGCGGGCGGCGGCCGCTCGGCTGCATCGCGCCCGACGACCAGAACGTGCTGCTGGACTGGGTGCAGGAGCACGAGCGCCGGCACGCGGCCCTCGACACGGTGGACGCGAGGCTGTGCGGCAAGTACGACGCCGACGAGGCGAGGCTGGCGCTCAAGCTGGGGCTCATGTGCGCGCACCCGTTGCCCGACGCGCGCCCCACCATGCGCCAGGTCACGCAGTACCTGGACGGCGACGCACCCATGCCGGAGGTGGCGCCGACGATGGTGAGCTACACCATGCTGGCGCTGATGCAGAACGACGGGTTCGACTCGTTCGCCATGTCCTTCCCTTCCACCGTCACGTCGACCGCCAGCCCCATGTCCGCCGACGTCTCGGCCGTGTCCGGCCTCTCCGGTGGAAGGTGA More
Protein seq	MPHTTSKPGIMVGVRCSCIDSNSESSVQTFDAMTRIAVTTHHMPCANCNSQTEANLPMGNHRLLLLLLLLLAVVGSDHGGVLAADEFTYNGFGGANLTLDGMAAVAPNGLLVLSNGTNQMAGHAFHPTPIRLRGGAAGGAVQSFSAAFVFAIVSNFTVLSDNGMAFVVAPSTRLSTFNAGQYLGILNVTDNGNADNNIFAVELDTMLNPEFQDMNSNHIGVDINSMKSVQNHSAGYYDEATGAFNNLSLISRQPMQVWVDYDGATTVLNVTMAPLDVPKPSKPLISAPVNLSSVVTDTAYVGFSAATGVIYTRHYVLGWSFSQNGAAPSLHTSSLPALPRFGPKPRSKVLEIVLPIATAAFVLALVIAAFLFVRRRVRYAEVREDWEVEFGPHRFSYKELYQATKGFKNKQLLGTGGFGRVYKGVLAKSNLEIAVKRVSHDSKQGMKEFIAEVVSIGHLRHRNLVQLLGYCRRKGELLLVTCGRRPLGCIAPDDQNVLLDWVQEHERRHAALDTVDARLCGKYDADEARLALKLGLMCAHPLPDARPTMRQVTQYLDGDAPMPEVAPTMVSYTMLALMQNDGFDSFAMSFPSTVTSTASPMSADVSAVSGLSGGR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_04g0020450	OsKYG_04g0020450.02	Chr04	27780381	27781549	+	IsoSeq
CDS seq	TCGGCAGGGTGTACAAGGGCGTGCTCGCGAAATCCAACCTCGAGATCG
Protein seq	SAGCTRACSRNPTSRS

No AS event found.

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.090416	18.526466	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_04g0531500	RBH	5.997754	4.817526	1.337930
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g44910	RBH	3.722449	2.971283	0.341306
Nipponbare \| IRGSP 1.0 \| RAP-db	Os04g0531500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0020910	RBH	0.567446	24.027630	1.886490
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_04g0021660	RBH	0.144073	11.597372	0.947428
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0021390	RBH	0.708469	16.166603	2.720187
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0021130	RBH	0.152188	0.396554	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0021320	RBH	1.369691	25.612370	4.012975
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0417300	RBH	4.5502275	92.878513	2.1329885
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0020110	RBH	0.307208	1.008627	0.138219
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0417900	RBH	5.4319575	74.2992895	0.9643105
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_04g0020620	RBH	0.154849	0.371062	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0026140	SBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_04g0020560	RBH	0.0	80.370331	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0020950	RBH	0.795003	2.274477	0.303707
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_04g0021120	RBH	0.087982	11.521097	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G020390	RBH	0.351470	3.472494	0.663258
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0020330	RBH	0.533187	44.560345	0.876718

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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